data_2P4
# 
_chem_comp.id                                    2P4 
_chem_comp.name                                  "(5R)-N-benzyl-5-({(2S)-2-[(1R)-1,2-dihydroxyethyl]pyrrolidin-1-yl}carbonyl)cyclopent-1-ene-1-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H26 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-03-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        358.431 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2P4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4AMZ 
_chem_comp.pdbx_subcomponent_list                "PMQ C54 TPK" 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2P4 C10  C10  C 0 1 N N N N N N 39.402 37.912 83.715 -1.222 0.218  0.135  C    C54 1  
2P4 O11  O11  O 0 1 N N N N N N 39.699 39.082 84.027 -1.147 0.266  -1.074 O    C54 2  
2P4 C12  C12  C 0 1 N N R N N N 39.744 36.774 84.632 -1.564 1.459  0.919  CA   C54 3  
2P4 C13  C13  C 0 1 N N N N N N 38.472 36.411 85.404 -3.093 1.681  0.933  CB   C54 4  
2P4 C14  C14  C 0 1 N N N N N N 38.822 36.405 86.896 -3.187 3.223  0.865  CG   C54 5  
2P4 C15  C15  C 0 1 N N N N N N 40.219 37.000 86.939 -1.899 3.660  0.207  CD   C54 6  
2P4 C16  C16  C 0 1 N N N N N N 40.711 37.148 85.709 -1.001 2.684  0.236  CN   C54 7  
2P4 C1   C1   C 0 1 N N R N N N 36.859 39.033 81.965 -1.914 -2.652 -0.737 C    TPK 8  
2P4 O2   O2   O 0 1 N N N N N N 35.926 37.961 81.894 -3.100 -2.698 0.061  O    TPK 9  
2P4 C3   C3   C 0 1 N N N N N N 36.656 39.675 83.367 -2.096 -1.634 -1.863 C3   TPK 10 
2P4 O4   O4   O 0 1 N N N N N N 37.590 40.730 83.566 -2.999 -2.159 -2.839 O4   TPK 11 
2P4 C5   C5   C 0 1 N N S N N N 38.281 38.522 81.621 -0.728 -2.240 0.137  CA   TPK 12 
2P4 C6   C6   C 0 1 N N N N N N 38.306 37.729 80.311 -0.521 -3.275 1.263  CB   TPK 13 
2P4 C7   C7   C 0 1 N N N N N N 38.249 36.254 80.690 -0.133 -2.392 2.479  CG   TPK 14 
2P4 C8   C8   C 0 1 N N N N N N 38.387 36.164 82.206 -1.004 -1.133 2.240  CD   TPK 15 
2P4 N9   N9   N 0 1 N N N N N N 38.731 37.537 82.603 -1.004 -0.946 0.778  N    TPK 16 
2P4 C17  C17  C 0 1 N N N N N N 42.087 37.575 85.420 0.357  2.781  -0.320 C17  PMQ 17 
2P4 O18  O18  O 0 1 N N N N N N 42.520 37.428 84.294 0.687  3.767  -0.951 O18  PMQ 18 
2P4 N19  N19  N 0 1 N N N N N N 42.816 38.107 86.418 1.236  1.777  -0.130 N19  PMQ 19 
2P4 C20  C20  C 0 1 N N N N N N 44.215 38.519 86.362 2.618  1.915  -0.598 C20  PMQ 20 
2P4 C21  C21  C 0 1 Y N N N N N 44.911 37.407 87.113 3.356  0.620  -0.374 C21  PMQ 21 
2P4 C22  C22  C 0 1 Y N N N N N 45.460 37.650 88.384 3.449  -0.308 -1.394 C22  PMQ 22 
2P4 C23  C23  C 0 1 Y N N N N N 46.071 36.624 89.119 4.126  -1.495 -1.189 C23  PMQ 23 
2P4 C24  C24  C 0 1 Y N N N N N 46.146 35.338 88.589 4.709  -1.755 0.037  C24  PMQ 24 
2P4 C25  C25  C 0 1 Y N N N N N 45.592 35.092 87.326 4.617  -0.827 1.057  C25  PMQ 25 
2P4 C26  C26  C 0 1 Y N N N N N 44.968 36.112 86.592 3.944  0.363  0.850  C26  PMQ 26 
2P4 H12  H12  H 0 1 N N N N N N 40.107 35.907 84.061 -1.182 1.381  1.937  HA   C54 27 
2P4 H13  H13  H 0 1 N N N N N N 37.687 37.156 85.206 -3.563 1.223  0.062  HB2  C54 28 
2P4 H13A H13A H 0 0 N N N N N N 38.118 35.415 85.098 -3.534 1.304  1.856  HB3  C54 29 
2P4 H14  H14  H 0 1 N N N N N N 38.114 37.023 87.468 -4.043 3.525  0.262  HG2  C54 30 
2P4 H14A H14A H 0 0 N N N N N N 38.819 35.380 87.296 -3.261 3.643  1.869  HG3  C54 31 
2P4 H15  H15  H 0 1 N N N N N N 40.743 37.267 87.845 -1.732 4.634  -0.229 HD2  C54 32 
2P4 H1   H1   H 0 1 N N N N N N 36.591 39.792 81.215 -1.726 -3.637 -1.164 H1   TPK 33 
2P4 HO2  HO2  H 0 1 N N N N N N 36.004 37.528 81.052 -3.329 -1.854 0.473  HO   TPK 34 
2P4 H3   H3   H 0 1 N N N N N N 35.634 40.076 83.438 -2.501 -0.708 -1.455 H3   TPK 35 
2P4 H3A  H3A  H 0 1 N N N N N N 36.803 38.909 84.142 -1.132 -1.433 -2.331 H3A  TPK 36 
2P4 HO4  HO4  H 0 1 N N N N N N 38.447 40.364 83.752 -3.162 -1.565 -3.584 HO4  TPK 37 
2P4 H5   H5   H 0 1 N N N N N N 38.979 39.370 81.563 0.174  -2.170 -0.472 HA   TPK 38 
2P4 H6   H6   H 0 1 N N N N N N 37.437 37.995 79.691 -1.444 -3.819 1.461  HB2  TPK 39 
2P4 H6A  H6A  H 0 1 N N N N N N 39.232 37.942 79.756 0.287  -3.962 1.012  HB3  TPK 40 
2P4 H7   H7   H 0 1 N N N N N N 37.288 35.822 80.374 -0.399 -2.879 3.417  HG2  TPK 41 
2P4 H7A  H7A  H 0 1 N N N N N N 39.073 35.710 80.205 0.928  -2.142 2.457  HG3  TPK 42 
2P4 H8   H8   H 0 1 N N N N N N 37.441 35.847 82.669 -2.019 -1.301 2.601  HD2  TPK 43 
2P4 H8A  H8A  H 0 1 N N N N N N 39.186 35.462 82.487 -0.563 -0.267 2.734  HD3  TPK 44 
2P4 HN19 HN19 H 0 0 N N N N N N 42.349 38.234 87.293 0.954  0.963  0.316  HN19 PMQ 45 
2P4 H20  H20  H 0 1 N N N N N N 44.570 38.581 85.323 2.619  2.155  -1.661 H20  PMQ 46 
2P4 H20A H20A H 0 0 N N N N N N 44.364 39.489 86.859 3.111  2.714  -0.045 H20A PMQ 47 
2P4 H22  H22  H 0 1 N N N N N N 45.410 38.645 88.802 2.993  -0.105 -2.352 H22  PMQ 48 
2P4 H23  H23  H 0 1 N N N N N N 46.483 36.831 90.096 4.198  -2.220 -1.986 H23  PMQ 49 
2P4 H24  H24  H 0 1 N N N N N N 46.624 34.543 89.143 5.238  -2.683 0.198  H24  PMQ 50 
2P4 H25  H25  H 0 1 N N N N N N 45.646 34.097 86.909 5.073  -1.030 2.015  H25  PMQ 51 
2P4 H26  H26  H 0 1 N N N N N N 44.533 35.897 85.627 3.875  1.090  1.646  H26  PMQ 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2P4 C1  O2   SING N N 1  
2P4 C1  C3   SING N N 2  
2P4 C1  C5   SING N N 3  
2P4 C3  O4   SING N N 4  
2P4 C5  C6   SING N N 5  
2P4 C5  N9   SING N N 6  
2P4 C6  C7   SING N N 7  
2P4 C7  C8   SING N N 8  
2P4 C8  N9   SING N N 9  
2P4 N9  C10  SING N N 10 
2P4 C10 O11  DOUB N N 11 
2P4 C10 C12  SING N N 12 
2P4 C12 C13  SING N N 13 
2P4 C12 C16  SING N N 14 
2P4 C13 C14  SING N N 15 
2P4 C14 C15  SING N N 16 
2P4 C15 C16  DOUB N N 17 
2P4 C16 C17  SING N N 18 
2P4 C17 O18  DOUB N N 19 
2P4 C17 N19  SING N N 20 
2P4 N19 C20  SING N N 21 
2P4 C20 C21  SING N N 22 
2P4 C21 C22  DOUB Y N 23 
2P4 C21 C26  SING Y N 24 
2P4 C22 C23  SING Y N 25 
2P4 C23 C24  DOUB Y N 26 
2P4 C24 C25  SING Y N 27 
2P4 C25 C26  DOUB Y N 28 
2P4 C1  H1   SING N N 29 
2P4 O2  HO2  SING N N 30 
2P4 C3  H3   SING N N 31 
2P4 C3  H3A  SING N N 32 
2P4 O4  HO4  SING N N 33 
2P4 C5  H5   SING N N 34 
2P4 C6  H6   SING N N 35 
2P4 C6  H6A  SING N N 36 
2P4 C7  H7   SING N N 37 
2P4 C7  H7A  SING N N 38 
2P4 C8  H8   SING N N 39 
2P4 C8  H8A  SING N N 40 
2P4 C12 H12  SING N N 41 
2P4 C13 H13  SING N N 42 
2P4 C13 H13A SING N N 43 
2P4 C14 H14  SING N N 44 
2P4 C14 H14A SING N N 45 
2P4 C15 H15  SING N N 46 
2P4 N19 HN19 SING N N 47 
2P4 C20 H20  SING N N 48 
2P4 C20 H20A SING N N 49 
2P4 C22 H22  SING N N 50 
2P4 C23 H23  SING N N 51 
2P4 C24 H24  SING N N 52 
2P4 C25 H25  SING N N 53 
2P4 C26 H26  SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2P4 InChI            InChI                1.03  "InChI=1S/C20H26N2O4/c23-13-18(24)17-10-5-11-22(17)20(26)16-9-4-8-15(16)19(25)21-12-14-6-2-1-3-7-14/h1-3,6-8,16-18,23-24H,4-5,9-13H2,(H,21,25)/t16-,17+,18+/m1/s1" 
2P4 InChIKey         InChI                1.03  YWYIBAJVRQWUCG-SQNIBIBYSA-N                                                                                                                                        
2P4 SMILES           ACDLabs              12.01 "O=C(N1C(C(O)CO)CCC1)C3C(C(=O)NCc2ccccc2)=CCC3"                                                                                                                    
2P4 SMILES_CANONICAL CACTVS               3.370 "OC[C@H](O)[C@@H]1CCCN1C(=O)[C@@H]2CCC=C2C(=O)NCc3ccccc3"                                                                                                          
2P4 SMILES           CACTVS               3.370 "OC[CH](O)[CH]1CCCN1C(=O)[CH]2CCC=C2C(=O)NCc3ccccc3"                                                                                                               
2P4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)C2=CCC[C@H]2C(=O)N3CCC[C@H]3[C@H](CO)O"                                                                                                          
2P4 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)C2=CCCC2C(=O)N3CCCC3C(CO)O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2P4 "SYSTEMATIC NAME" ACDLabs              12.01 "(5R)-N-benzyl-5-({(2S)-2-[(1R)-1,2-dihydroxyethyl]pyrrolidin-1-yl}carbonyl)cyclopent-1-ene-1-carboxamide"        
2P4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(5R)-5-[(2S)-2-[(1R)-1,2-bis(oxidanyl)ethyl]pyrrolidin-1-yl]carbonyl-N-(phenylmethyl)cyclopentene-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2P4 "Create component" 2012-03-15 EBI  
2P4 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2P4 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
