data_DB4
# 
_chem_comp.id                                    DB4 
_chem_comp.name                                  "(2R)-3-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H32 O16 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-10-03 
_chem_comp.pdbx_modified_date                    2014-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        554.374 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DB4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4MXP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DB4 O10 O10 O 0 1 N N N -39.370 0.506  -14.751 -7.797  -1.931 0.734  O10 DB4 1  
DB4 C14 C14 C 0 1 N N N -40.180 1.394  -14.775 -7.623  -0.969 0.025  C14 DB4 2  
DB4 C15 C15 C 0 1 N N N -40.877 1.818  -16.036 -8.803  -0.269 -0.598 C15 DB4 3  
DB4 C16 C16 C 0 1 N N N -41.304 0.590  -16.812 -10.095 -0.972 -0.175 C16 DB4 4  
DB4 C17 C17 C 0 1 N N N -42.450 -0.103 -16.128 -11.293 -0.261 -0.807 C17 DB4 5  
DB4 O9  O9  O 0 1 N N N -40.456 2.056  -13.559 -6.379  -0.519 -0.204 O9  DB4 6  
DB4 C9  C9  C 0 1 N N N -39.700 1.764  -12.406 -5.291  -1.239 0.434  C9  DB4 7  
DB4 C8  C8  C 0 1 N N R -39.336 3.074  -11.750 -3.959  -0.585 0.059  C8  DB4 8  
DB4 O7  O7  O 0 1 N N N -40.541 3.811  -11.480 -3.907  0.757  0.610  O7  DB4 9  
DB4 C10 C10 C 0 1 N N N -40.519 5.272  -11.561 -4.377  1.751  -0.160 C10 DB4 10 
DB4 O8  O8  O 0 1 N N N -39.472 5.885  -11.764 -4.818  1.507  -1.258 O8  DB4 11 
DB4 C11 C11 C 0 1 N N N -41.817 6.024  -11.382 -4.355  3.170  0.345  C11 DB4 12 
DB4 C12 C12 C 0 1 N N N -41.614 7.188  -10.415 -4.944  4.099  -0.719 C12 DB4 13 
DB4 C13 C13 C 0 1 N N N -42.915 7.898  -10.089 -4.922  5.540  -0.207 C13 DB4 14 
DB4 C7  C7  C 0 1 N N N -38.635 2.778  -10.447 -2.806  -1.415 0.627  C7  DB4 15 
DB4 O13 O13 O 0 1 N N N -39.475 1.993  -9.609  -1.562  -0.872 0.181  O13 DB4 16 
DB4 P1  P1  P 0 1 N N N -39.641 2.263  -8.050  -0.135  -1.496 0.588  P1  DB4 17 
DB4 O11 O11 O 0 1 N N N -39.930 3.710  -7.741  -0.034  -1.575 2.062  O11 DB4 18 
DB4 O12 O12 O 0 1 N N N -40.480 1.177  -7.470  0.002   -2.973 -0.039 O12 DB4 19 
DB4 O1  O1  O 0 1 N N N -38.122 2.090  -7.502  1.043   -0.559 0.018  O1  DB4 20 
DB4 C1  C1  C 0 1 N N N -37.484 0.812  -7.597  2.425   -0.788 0.301  C1  DB4 21 
DB4 C2  C2  C 0 1 N N R -37.672 -0.027 -6.338  3.008   0.432  1.017  C2  DB4 22 
DB4 O2  O2  O 0 1 N N N -37.196 0.714  -5.202  2.877   1.583  0.181  O2  DB4 23 
DB4 C3  C3  C 0 1 N N S -36.953 -1.367 -6.511  4.487   0.187  1.320  C3  DB4 24 
DB4 O3  O3  O 0 1 N N N -37.170 -2.166 -5.341  5.031   1.326  1.990  O3  DB4 25 
DB4 C4  C4  C 0 1 N N N -35.450 -1.124 -6.755  5.244   -0.045 0.011  C4  DB4 26 
DB4 O4  O4  O 0 1 N N N -34.761 -2.363 -6.855  6.626   -0.274 0.294  O4  DB4 27 
DB4 P4  P4  P 0 1 N N N -33.908 -2.893 -5.553  7.805   0.663  -0.276 P4  DB4 28 
DB4 O43 O43 O 0 1 N N N -32.715 -2.000 -5.431  9.231   0.038  0.131  O43 DB4 29 
DB4 O42 O42 O 0 1 N N N -33.581 -4.318 -5.954  7.703   0.742  -1.751 O42 DB4 30 
DB4 O41 O41 O 0 1 N N N -34.821 -2.793 -4.378  7.667   2.140  0.350  O41 DB4 31 
DB4 C5  C5  C 0 1 N N R -35.231 -0.293 -7.988  4.662   -1.265 -0.706 C5  DB4 32 
DB4 O5  O5  O 0 1 N N N -33.847 0.062  -8.150  5.369   -1.481 -1.929 O5  DB4 33 
DB4 C6  C6  C 0 1 N N R -35.982 1.016  -7.876  3.182   -1.020 -1.009 C6  DB4 34 
DB4 O6  O6  O 0 1 N N N -35.761 1.717  -9.106  2.638   -2.159 -1.679 O6  DB4 35 
DB4 H1  H1  H 0 1 N N N -40.191 2.420  -16.650 -8.828  0.769  -0.264 H1  DB4 36 
DB4 H2  H2  H 0 1 N N N -41.763 2.418  -15.782 -8.712  -0.299 -1.684 H2  DB4 37 
DB4 H3  H3  H 0 1 N N N -40.454 -0.104 -16.884 -10.070 -2.009 -0.509 H3  DB4 38 
DB4 H4  H4  H 0 1 N N N -41.617 0.893  -17.822 -10.186 -0.942 0.911  H4  DB4 39 
DB4 H5  H5  H 0 1 N N N -42.742 -0.990 -16.709 -12.213 -0.762 -0.506 H5  DB4 40 
DB4 H6  H6  H 0 1 N N N -42.142 -0.411 -15.118 -11.318 0.776  -0.473 H6  DB4 41 
DB4 H7  H7  H 0 1 N N N -43.305 0.586  -16.056 -11.202 -0.291 -1.893 H7  DB4 42 
DB4 H8  H8  H 0 1 N N N -40.295 1.151  -11.713 -5.419  -1.208 1.516  H8  DB4 43 
DB4 H9  H9  H 0 1 N N N -38.786 1.219  -12.685 -5.294  -2.276 0.097  H9  DB4 44 
DB4 H10 H10 H 0 1 N N N -38.668 3.647  -12.410 -3.871  -0.536 -1.026 H10 DB4 45 
DB4 H11 H11 H 0 1 N N N -42.151 6.412  -12.356 -4.948  3.241  1.257  H11 DB4 46 
DB4 H12 H12 H 0 1 N N N -42.580 5.343  -10.978 -3.327  3.465  0.555  H12 DB4 47 
DB4 H13 H13 H 0 1 N N N -41.178 6.801  -9.482  -4.351  4.029  -1.631 H13 DB4 48 
DB4 H14 H14 H 0 1 N N N -40.921 7.910  -10.871 -5.972  3.804  -0.930 H14 DB4 49 
DB4 H15 H15 H 0 1 N N N -42.717 8.725  -9.392  -5.515  5.611  0.705  H15 DB4 50 
DB4 H16 H16 H 0 1 N N N -43.357 8.296  -11.014 -3.894  5.835  0.004  H16 DB4 51 
DB4 H17 H17 H 0 1 N N N -43.614 7.187  -9.625  -5.341  6.202  -0.965 H17 DB4 52 
DB4 H18 H18 H 0 1 N N N -37.706 2.226  -10.651 -2.843  -1.391 1.716  H18 DB4 53 
DB4 H19 H19 H 0 1 N N N -38.396 3.724  -9.939  -2.896  -2.446 0.284  H19 DB4 54 
DB4 H20 H20 H 0 1 N N N -41.159 1.557  -6.925  -0.055  -2.997 -1.004 H20 DB4 55 
DB4 H21 H21 H 0 1 N N N -37.911 0.255  -8.444  2.525   -1.666 0.938  H21 DB4 56 
DB4 H22 H22 H 0 1 N N N -38.747 -0.229 -6.217  2.468   0.597  1.950  H22 DB4 57 
DB4 H23 H23 H 0 1 N N N -37.311 0.195  -4.414  3.226   2.395  0.573  H23 DB4 58 
DB4 H24 H24 H 0 1 N N N -37.370 -1.876 -7.393  4.587   -0.692 1.958  H24 DB4 59 
DB4 H25 H25 H 0 1 N N N -38.102 -2.299 -5.216  4.599   1.532  2.829  H25 DB4 60 
DB4 H26 H26 H 0 1 N N N -35.060 -0.563 -5.893  5.144   0.833  -0.627 H26 DB4 61 
DB4 H27 H27 H 0 1 N N N -31.928 -2.493 -5.632  9.989   0.552  -0.180 H27 DB4 62 
DB4 H28 H28 H 0 1 N N N -35.046 -3.665 -4.076  7.724   2.164  1.316  H28 DB4 63 
DB4 H29 H29 H 0 1 N N N -35.590 -0.844 -8.870  4.761   -2.143 -0.068 H29 DB4 64 
DB4 H30 H30 H 0 1 N N N -33.324 -0.727 -8.226  5.052   -2.240 -2.437 H30 DB4 65 
DB4 H31 H31 H 0 1 N N N -35.555 1.592  -7.042  3.082   -0.141 -1.647 H31 DB4 66 
DB4 H32 H32 H 0 1 N N N -36.216 2.550  -9.082  3.070   -2.365 -2.518 H32 DB4 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DB4 C16 C17 SING N N 1  
DB4 C16 C15 SING N N 2  
DB4 C15 C14 SING N N 3  
DB4 C14 O10 DOUB N N 4  
DB4 C14 O9  SING N N 5  
DB4 O9  C9  SING N N 6  
DB4 C9  C8  SING N N 7  
DB4 O8  C10 DOUB N N 8  
DB4 C8  O7  SING N N 9  
DB4 C8  C7  SING N N 10 
DB4 C10 O7  SING N N 11 
DB4 C10 C11 SING N N 12 
DB4 C11 C12 SING N N 13 
DB4 C7  O13 SING N N 14 
DB4 C12 C13 SING N N 15 
DB4 O13 P1  SING N N 16 
DB4 O6  C6  SING N N 17 
DB4 O5  C5  SING N N 18 
DB4 P1  O11 DOUB N N 19 
DB4 P1  O1  SING N N 20 
DB4 P1  O12 SING N N 21 
DB4 C5  C6  SING N N 22 
DB4 C5  C4  SING N N 23 
DB4 C6  C1  SING N N 24 
DB4 C1  O1  SING N N 25 
DB4 C1  C2  SING N N 26 
DB4 O4  C4  SING N N 27 
DB4 O4  P4  SING N N 28 
DB4 C4  C3  SING N N 29 
DB4 C3  C2  SING N N 30 
DB4 C3  O3  SING N N 31 
DB4 C2  O2  SING N N 32 
DB4 O42 P4  DOUB N N 33 
DB4 P4  O43 SING N N 34 
DB4 P4  O41 SING N N 35 
DB4 C15 H1  SING N N 36 
DB4 C15 H2  SING N N 37 
DB4 C16 H3  SING N N 38 
DB4 C16 H4  SING N N 39 
DB4 C17 H5  SING N N 40 
DB4 C17 H6  SING N N 41 
DB4 C17 H7  SING N N 42 
DB4 C9  H8  SING N N 43 
DB4 C9  H9  SING N N 44 
DB4 C8  H10 SING N N 45 
DB4 C11 H11 SING N N 46 
DB4 C11 H12 SING N N 47 
DB4 C12 H13 SING N N 48 
DB4 C12 H14 SING N N 49 
DB4 C13 H15 SING N N 50 
DB4 C13 H16 SING N N 51 
DB4 C13 H17 SING N N 52 
DB4 C7  H18 SING N N 53 
DB4 C7  H19 SING N N 54 
DB4 O12 H20 SING N N 55 
DB4 C1  H21 SING N N 56 
DB4 C2  H22 SING N N 57 
DB4 O2  H23 SING N N 58 
DB4 C3  H24 SING N N 59 
DB4 O3  H25 SING N N 60 
DB4 C4  H26 SING N N 61 
DB4 O43 H27 SING N N 62 
DB4 O41 H28 SING N N 63 
DB4 C5  H29 SING N N 64 
DB4 O5  H30 SING N N 65 
DB4 C6  H31 SING N N 66 
DB4 O6  H32 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DB4 SMILES           ACDLabs              12.01 "O=C(OCC(OC(=O)CCC)COP(=O)(O)OC1C(O)C(O)C(OP(=O)(O)O)C(O)C1O)CCC" 
DB4 InChI            InChI                1.03  
"InChI=1S/C17H32O16P2/c1-3-5-10(18)29-7-9(31-11(19)6-4-2)8-30-35(27,28)33-17-14(22)12(20)16(13(21)15(17)23)32-34(24,25)26/h9,12-17,20-23H,3-8H2,1-2H3,(H,27,28)(H2,24,25,26)/t9-,12-,13+,14-,15-,16+,17+/m1/s1" 
DB4 InChIKey         InChI                1.03  GZEWZLHSHLUSGP-HDIZFQRBSA-N 
DB4 SMILES_CANONICAL CACTVS               3.385 "CCCC(=O)OC[C@H](CO[P](O)(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@H](O)[C@H]1O)OC(=O)CCC" 
DB4 SMILES           CACTVS               3.385 "CCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O)OC(=O)CCC" 
DB4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC(=O)OC[C@H](COP(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1O)O)OP(=O)(O)O)O)O)OC(=O)CCC" 
DB4 SMILES           "OpenEye OEToolkits" 1.7.6 "CCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)O)OP(=O)(O)O)O)O)OC(=O)CCC" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DB4 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-3-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate" 
DB4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-2-butanoyloxy-3-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] butanoate"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DB4 "Create component" 2013-10-03 RCSB 
DB4 "Initial release"  2014-03-19 RCSB 
# 
