data_DN4
#

_chem_comp.id                                   DN4
_chem_comp.name                                 
;[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]
[(2R,3S,4R,5R)-5-(3-carboxypyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H27 N6 O18 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Nicotinic acid adenine dinucleotide phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-05-24
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       744.390
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DN4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4F45
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DN4  PA   PA   P   0  1  N  N  N  -400.918  -938.574   4.577   0.245  -3.153  -0.038  PA   DN4   1  
DN4  O1A  O1A  O   0  1  N  N  N  -399.818  -939.601   4.626   0.173  -4.254  -1.024  O1A  DN4   2  
DN4  O2A  O2A  O   0  1  N  N  N  -401.583  -938.053   5.786   0.777  -3.727   1.369  O2A  DN4   3  
DN4  O5B  O5B  O   0  1  N  N  N  -399.877  -937.299   4.740   1.256  -2.019  -0.572  O5B  DN4   4  
DN4  C5B  C5B  C   0  1  N  N  N  -400.305  -935.902   4.608   2.607  -2.295  -0.946  C5B  DN4   5  
DN4  C4B  C4B  C   0  1  N  N  R  -400.460  -935.068   5.947   3.283  -1.002  -1.405  C4B  DN4   6  
DN4  O4B  O4B  O   0  1  N  N  N  -401.875  -934.629   6.164   3.409  -0.096  -0.296  O4B  DN4   7  
DN4  C3B  C3B  C   0  1  N  N  R  -399.997  -935.717   7.264   4.707  -1.306  -1.911  C3B  DN4   8  
DN4  O3B  O3B  O   0  1  N  N  N  -399.318  -934.735   8.037   4.843  -0.921  -3.281  O3B  DN4   9  
DN4  C2B  C2B  C   0  1  N  N  R  -401.305  -936.110   7.950   5.623  -0.442  -1.011  C2B  DN4  10  
DN4  O2B  O2B  O   0  1  N  N  N  -401.214  -936.068   9.386   6.672   0.155  -1.775  O2B  DN4  11  
DN4  C1B  C1B  C   0  1  N  N  R  -402.318  -935.072   7.473   4.639   0.636  -0.487  C1B  DN4  12  
DN4  N9A  N9A  N   0  1  Y  N  N  -403.617  -935.812   7.472   5.112   1.190   0.784  N9A  DN4  13  
DN4  C8A  C8A  C   0  1  Y  N  N  -403.907  -936.924   6.785   4.811   0.724   2.029  C8A  DN4  14  
DN4  N7A  N7A  N   0  1  Y  N  N  -405.156  -937.310   7.056   5.401   1.453   2.932  N7A  DN4  15  
DN4  C5A  C5A  C   0  1  Y  N  N  -405.663  -936.438   7.926   6.115   2.431   2.325  C5A  DN4  16  
DN4  C6A  C6A  C   0  1  Y  N  N  -406.895  -936.313   8.554   6.929   3.485   2.775  C6A  DN4  17  
DN4  N6A  N6A  N   0  1  N  N  N  -407.859  -937.196   8.319   7.140   3.689   4.127  N6A  DN4  18  
DN4  N1A  N1A  N   0  1  Y  N  N  -407.101  -935.280   9.393   7.491   4.280   1.871  N1A  DN4  19  
DN4  C2A  C2A  C   0  1  Y  N  N  -406.140  -934.388   9.636   7.296   4.093   0.578  C2A  DN4  20  
DN4  N3A  N3A  N   0  1  Y  N  N  -404.949  -934.477   9.057   6.542   3.121   0.112  N3A  DN4  21  
DN4  C4A  C4A  C   0  1  Y  N  N  -404.687  -935.486   8.196   5.943   2.271   0.940  C4A  DN4  22  
DN4  O3   O3   O   0  1  N  N  N  -401.293  -937.973   3.123  -1.220  -2.515   0.162  O3   DN4  23  
DN4  PN   PN   P   0  1  N  N  N  -402.761  -937.283   2.790  -2.692  -3.135   0.363  PN   DN4  24  
DN4  O1N  O1N  O  -1  1  N  N  N  -403.354  -936.766   4.058  -3.209  -3.681  -0.987  O1N  DN4  25  
DN4  O2N  O2N  O   0  1  N  N  N  -403.619  -938.119   1.891  -2.631  -4.284   1.393  O2N  DN4  26  
DN4  O5D  O5D  O   0  1  N  N  N  -402.022  -936.149   1.836  -3.689  -1.989   0.895  O5D  DN4  27  
DN4  C5D  C5D  C   0  1  N  N  N  -402.456  -934.831   1.711  -5.044  -2.248   1.269  C5D  DN4  28  
DN4  C4D  C4D  C   0  1  N  N  R  -403.059  -934.486   0.336  -5.704  -0.946   1.727  C4D  DN4  29  
DN4  O4D  O4D  O   0  1  N  N  N  -403.573  -933.168   0.612  -5.819  -0.040   0.616  O4D  DN4  30  
DN4  C3D  C3D  C   0  1  N  N  S  -402.043  -934.252  -0.796  -7.131  -1.232   2.233  C3D  DN4  31  
DN4  O3D  O3D  O   0  1  N  N  N  -402.656  -934.353  -2.130  -7.263  -0.843   3.602  O3D  DN4  32  
DN4  C2D  C2D  C   0  1  N  N  R  -401.490  -932.835  -0.475  -8.037  -0.358   1.332  C2D  DN4  33  
DN4  O2D  O2D  O   0  1  N  N  N  -401.597  -931.982  -1.615  -9.079   0.252   2.095  O2D  DN4  34  
DN4  C1D  C1D  C   0  1  N  N  R  -402.388  -932.279   0.665  -7.041   0.706   0.806  C1D  DN4  35  
DN4  N1N  N1N  N   1  1  Y  N  N  -401.713  -932.077   2.016  -7.506   1.265  -0.466  N1N  DN4  36  
DN4  C2N  C2N  C   0  1  Y  N  N  -400.419  -931.481   2.121  -8.033   2.471  -0.480  C2N  DN4  37  
DN4  C3N  C3N  C   0  1  Y  N  N  -399.761  -931.272   3.342  -8.487   3.034  -1.674  C3N  DN4  38  
DN4  C7N  C7N  C   0  1  N  N  N  -398.337  -930.648   3.376  -9.078   4.388  -1.690  C7N  DN4  39  
DN4  O7N  O7N  O   0  1  N  N  N  -397.773  -930.552   2.271  -9.173   5.021  -0.658  O7N  DN4  40  
DN4  C4N  C4N  C   0  1  Y  N  N  -400.420  -931.651   4.506  -8.373   2.293  -2.857  C4N  DN4  41  
DN4  C5N  C5N  C   0  1  Y  N  N  -401.702  -932.217   4.423  -7.811   1.030  -2.788  C5N  DN4  42  
DN4  C6N  C6N  C   0  1  Y  N  N  -402.365  -932.426   3.210  -7.381   0.546  -1.566  C6N  DN4  43  
DN4  P2B  P2B  P   0  1  N  N  N  -400.888  -937.413  10.229   8.233  -0.087  -1.461  P2B  DN4  44  
DN4  O1X  O1X  O   0  1  N  N  N  -401.469  -938.646   9.652   8.512   0.265  -0.050  O1X  DN4  45  
DN4  O2X  O2X  O   0  1  N  N  N  -399.268  -937.400  10.279   8.597  -1.635  -1.710  O2X  DN4  46  
DN4  O3X  O3X  O   0  1  N  N  N  -401.415  -937.137  11.732   9.125   0.838  -2.431  O3X  DN4  47  
DN4  O8N  O8N  O   0  1  N  N  N  -397.803  -930.260   4.457  -9.513   4.919  -2.849  O8N  DN4  48  
DN4  H1   H1   H   0  1  N  N  N  -401.208  -938.464   6.556   0.849  -3.058   2.064  H1   DN4  49  
DN4  H2   H2   H   0  1  N  N  N  -399.564  -935.386   3.979   3.145  -2.703  -0.090  H2   DN4  50  
DN4  H3   H3   H   0  1  N  N  N  -401.281  -935.900   4.101   2.618  -3.020  -1.760  H3   DN4  51  
DN4  H4   H4   H   0  1  N  N  N  -399.855  -934.159   5.814   2.697  -0.538  -2.198  H4   DN4  52  
DN4  H5   H5   H   0  1  N  N  N  -399.375  -936.603   7.065   4.938  -2.364  -1.787  H5   DN4  53  
DN4  H6   H6   H   0  1  N  N  N  -399.026  -935.121   8.854   4.250  -1.390  -3.883  H6   DN4  54  
DN4  H7   H7   H   0  1  N  N  N  -401.613  -937.109   7.608   6.029  -1.031  -0.190  H7   DN4  55  
DN4  H8   H8   H   0  1  N  N  N  -402.356  -934.232   8.182   4.506   1.426  -1.225  H8   DN4  56  
DN4  H9   H9   H   0  1  N  N  N  -403.232  -937.432   6.113   4.177  -0.126   2.237  H9   DN4  57  
DN4  H10  H10  H   0  1  N  N  N  -408.674  -936.948   8.844   6.724   3.101   4.777  H10  DN4  58  
DN4  H11  H11  H   0  1  N  N  N  -408.079  -937.198   7.343   7.704   4.419   4.425  H11  DN4  59  
DN4  H12  H12  H   0  1  N  N  N  -406.335  -933.575  10.319   7.772   4.764  -0.122  H12  DN4  60  
DN4  H14  H14  H   0  1  N  N  N  -401.596  -934.168   1.885  -5.586  -2.650   0.414  H14  DN4  61  
DN4  H15  H15  H   0  1  N  N  N  -403.222  -934.647   2.478  -5.063  -2.971   2.085  H15  DN4  62  
DN4  H16  H16  H   0  1  N  N  N  -403.839  -935.204   0.042  -5.112  -0.488   2.519  H16  DN4  63  
DN4  H17  H17  H   0  1  N  N  N  -401.226  -934.982  -0.702  -7.375  -2.287   2.111  H17  DN4  64  
DN4  H18  H18  H   0  1  N  N  N  -402.974  -935.238  -2.267  -8.157  -0.948   3.956  H18  DN4  65  
DN4  H19  H19  H   0  1  N  N  N  -400.450  -932.913  -0.124  -8.450  -0.944   0.511  H19  DN4  66  
DN4  H20  H20  H   0  1  N  N  N  -401.255  -931.122  -1.401  -9.677  -0.379   2.520  H20  DN4  67  
DN4  H21  H21  H   0  1  N  N  N  -402.720  -931.284   0.333  -6.897   1.496   1.543  H21  DN4  68  
DN4  H22  H22  H   0  1  N  N  N  -399.921  -931.175   1.213  -8.116   3.030   0.441  H22  DN4  69  
DN4  H23  H23  H   0  1  N  N  N  -399.949  -931.511   5.468  -8.714   2.697  -3.799  H23  DN4  70  
DN4  H24  H24  H   0  1  N  N  N  -402.199  -932.504   5.338  -7.707   0.430  -3.680  H24  DN4  71  
DN4  H25  H25  H   0  1  N  N  N  -403.359  -932.848   3.191  -6.938  -0.437  -1.510  H25  DN4  72  
DN4  H26  H26  H   0  1  N  N  N  -398.933  -938.213   9.918   8.439  -1.935  -2.616  H26  DN4  73  
DN4  H27  H27  H   0  1  N  N  N  -402.017  -937.826  11.989  10.078   0.743  -2.296  H27  DN4  74  
DN4  H28  H28  H   0  1  N  N  N  -396.942  -929.903   4.275  -9.892   5.808  -2.809  H28  DN4  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DN4  O3D  C3D  SING  N  N   1  
DN4  O2D  C2D  SING  N  N   2  
DN4  C3D  C2D  SING  N  N   3  
DN4  C3D  C4D  SING  N  N   4  
DN4  C2D  C1D  SING  N  N   5  
DN4  C4D  O4D  SING  N  N   6  
DN4  C4D  C5D  SING  N  N   7  
DN4  O4D  C1D  SING  N  N   8  
DN4  C1D  N1N  SING  N  N   9  
DN4  C5D  O5D  SING  N  N  10  
DN4  O5D  PN   SING  N  N  11  
DN4  O2N  PN   DOUB  N  N  12  
DN4  N1N  C2N  DOUB  Y  N  13  
DN4  N1N  C6N  SING  Y  N  14  
DN4  C2N  C3N  SING  Y  N  15  
DN4  O7N  C7N  DOUB  N  N  16  
DN4  PN   O3   SING  N  N  17  
DN4  PN   O1N  SING  N  N  18  
DN4  O3   PA   SING  N  N  19  
DN4  C6N  C5N  DOUB  Y  N  20  
DN4  C3N  C7N  SING  N  N  21  
DN4  C3N  C4N  DOUB  Y  N  22  
DN4  C7N  O8N  SING  N  N  23  
DN4  C5N  C4N  SING  Y  N  24  
DN4  PA   O1A  DOUB  N  N  25  
DN4  PA   O5B  SING  N  N  26  
DN4  PA   O2A  SING  N  N  27  
DN4  C5B  O5B  SING  N  N  28  
DN4  C5B  C4B  SING  N  N  29  
DN4  C4B  O4B  SING  N  N  30  
DN4  C4B  C3B  SING  N  N  31  
DN4  O4B  C1B  SING  N  N  32  
DN4  C8A  N7A  DOUB  Y  N  33  
DN4  C8A  N9A  SING  Y  N  34  
DN4  N7A  C5A  SING  Y  N  35  
DN4  C3B  C2B  SING  N  N  36  
DN4  C3B  O3B  SING  N  N  37  
DN4  N9A  C1B  SING  N  N  38  
DN4  N9A  C4A  SING  Y  N  39  
DN4  C1B  C2B  SING  N  N  40  
DN4  C5A  C4A  DOUB  Y  N  41  
DN4  C5A  C6A  SING  Y  N  42  
DN4  C2B  O2B  SING  N  N  43  
DN4  C4A  N3A  SING  Y  N  44  
DN4  N6A  C6A  SING  N  N  45  
DN4  C6A  N1A  DOUB  Y  N  46  
DN4  N3A  C2A  DOUB  Y  N  47  
DN4  O2B  P2B  SING  N  N  48  
DN4  N1A  C2A  SING  Y  N  49  
DN4  O1X  P2B  DOUB  N  N  50  
DN4  P2B  O2X  SING  N  N  51  
DN4  P2B  O3X  SING  N  N  52  
DN4  O2A  H1   SING  N  N  53  
DN4  C5B  H2   SING  N  N  54  
DN4  C5B  H3   SING  N  N  55  
DN4  C4B  H4   SING  N  N  56  
DN4  C3B  H5   SING  N  N  57  
DN4  O3B  H6   SING  N  N  58  
DN4  C2B  H7   SING  N  N  59  
DN4  C1B  H8   SING  N  N  60  
DN4  C8A  H9   SING  N  N  61  
DN4  N6A  H10  SING  N  N  62  
DN4  N6A  H11  SING  N  N  63  
DN4  C2A  H12  SING  N  N  64  
DN4  C5D  H14  SING  N  N  65  
DN4  C5D  H15  SING  N  N  66  
DN4  C4D  H16  SING  N  N  67  
DN4  C3D  H17  SING  N  N  68  
DN4  O3D  H18  SING  N  N  69  
DN4  C2D  H19  SING  N  N  70  
DN4  O2D  H20  SING  N  N  71  
DN4  C1D  H21  SING  N  N  72  
DN4  C2N  H22  SING  N  N  73  
DN4  C4N  H23  SING  N  N  74  
DN4  C5N  H24  SING  N  N  75  
DN4  C6N  H25  SING  N  N  76  
DN4  O2X  H26  SING  N  N  77  
DN4  O3X  H27  SING  N  N  78  
DN4  O8N  H28  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DN4  InChI             InChI                 1.03   "InChI=1S/C21H27N6O18P3/c22-17-12-18(24-7-23-17)27(8-25-12)20-16(44-46(33,34)35)14(29)11(43-20)6-41-48(38,39)45-47(36,37)40-5-10-13(28)15(30)19(42-10)26-3-1-2-9(4-26)21(31)32/h1-4,7-8,10-11,13-16,19-20,28-30H,5-6H2,(H6-,22,23,24,31,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,19-,20-/m1/s1"  
DN4  InChIKey          InChI                 1.03   QOTXBMGJKFVZRD-HISDBWNOSA-N  
DN4  SMILES_CANONICAL  CACTVS                3.370  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P]([O-])(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)[n+]5cccc(c5)C(O)=O)[C@@H](O)[C@H]3O[P](O)(O)=O"  
DN4  SMILES            CACTVS                3.370  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P]([O-])(=O)OC[CH]4O[CH]([CH](O)[CH]4O)[n+]5cccc(c5)C(O)=O)[CH](O)[CH]3O[P](O)(O)=O"  
DN4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)([O-])OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)O"  
DN4  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          DN4
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(3-carboxypyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DN4  "Create component"  2012-05-24  PDBJ  
DN4  "Initial release"   2013-04-03  RCSB  
DN4  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DN4
_pdbx_chem_comp_synonyms.name        "Nicotinic acid adenine dinucleotide phosphate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
