data_EB4
#

_chem_comp.id                                   EB4
_chem_comp.name                                 "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H27 N3 O15"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Enterobactin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-04-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       669.546
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EB4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3CMP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EB4  O6    O6    O  0  1  N  N  N  30.100  75.161  64.056   3.664  -4.780   3.535  O6    EB4   1  
EB4  O4    O4    O  0  1  N  N  N  26.728  77.394  62.867  -5.885  -0.658   3.769  O4    EB4   2  
EB4  O5    O5    O  0  1  N  N  N  26.452  75.737  65.629   2.529   5.436   3.577  O5    EB4   3  
EB4  N1    N1    N  0  1  N  N  N  29.185  81.559  64.787  -2.549   1.052  -1.007  N1    EB4   4  
EB4  C5    C5    C  0  1  Y  N  N  25.683  76.442  66.506   2.387   4.234   2.956  C5    EB4   5  
EB4  C4    C4    C  0  1  Y  N  N  26.835  78.712  62.547  -4.794  -0.158   3.129  C4    EB4   6  
EB4  C1    C1    C  0  1  Y  N  N  27.830  79.476  63.131  -4.784  -0.064   1.740  C1    EB4   7  
EB4  C2    C2    C  0  1  Y  N  N  25.885  77.805  66.665   2.407   4.162   1.566  C2    EB4   8  
EB4  C6    C6    C  0  1  Y  N  N  31.022  75.479  65.007   2.659  -4.078   2.945  C6    EB4   9  
EB4  C8    C8    C  0  1  Y  N  N  24.693  75.794  67.240   2.228   3.081   3.707  C8    EB4  10  
EB4  N2    N2    N  0  1  N  N  N  26.488  80.476  68.149   2.140   1.635  -1.142  N2    EB4  11  
EB4  C9    C9    C  0  1  Y  N  N  32.293  74.914  64.964   1.784  -3.337   3.720  C9    EB4  12  
EB4  C10   C10   C  0  1  Y  N  N  26.070  80.636  61.320  -2.580   0.773   3.213  C10   EB4  13  
EB4  O3    O3    O  0  1  N  N  N  29.449  76.918  66.052   3.374  -4.820   0.796  O3    EB4  14  
EB4  N3    N3    N  0  1  N  N  N  31.321  78.969  67.840   0.316  -2.690  -1.079  N3    EB4  15  
EB4  C16   C16   C  0  1  Y  N  N  27.950  80.825  62.822  -3.658   0.451   1.088  C16   EB4  16  
EB4  C7    C7    C  0  1  Y  N  N  25.952  79.287  61.640  -3.695   0.263   3.858  C7    EB4  17  
EB4  C3    C3    C  0  1  Y  N  N  30.697  76.368  66.020   2.515  -4.099   1.561  C3    EB4  18  
EB4  C11   C11   C  0  1  Y  N  N  23.909  76.514  68.134   2.083   1.854   3.082  C11   EB4  19  
EB4  O1    O1    O  0  1  N  N  N  28.680  78.884  64.018  -5.862  -0.471   1.022  O1    EB4  20  
EB4  O2    O2    O  0  1  N  N  N  26.856  78.426  65.940   2.568   5.288   0.827  O2    EB4  21  
EB4  C12   C12   C  0  1  Y  N  N  33.233  75.242  65.938   0.758  -2.620   3.127  C12   EB4  22  
EB4  C15   C15   C  0  1  Y  N  N  32.904  76.135  66.956   0.599  -2.636   1.759  C15   EB4  23  
EB4  C14   C14   C  0  1  Y  N  N  24.112  77.882  68.292   2.096   1.767   1.707  C14   EB4  24  
EB4  C13   C13   C  0  1  Y  N  N  27.071  81.403  61.911  -2.554   0.867   1.839  C13   EB4  25  
EB4  O7    O7    O  0  1  N  N  N  29.732  82.353  62.755  -4.597   0.193  -1.033  O7    EB4  26  
EB4  C19   C19   C  0  1  N  N  N  29.034  81.644  63.462  -3.635   0.555  -0.383  C19   EB4  27  
EB4  C22   C22   C  0  1  N  N  S  30.211  82.269  65.547  -2.527   1.156  -2.469  C22   EB4  28  
EB4  C25   C25   C  0  1  N  N  N  31.293  81.300  65.960  -2.086  -0.159  -3.059  C25   EB4  29  
EB4  O10   O10   O  0  1  N  N  N  31.542  80.337  65.248  -2.070  -0.308  -4.257  O10   EB4  30  
EB4  O15   O15   O  0  1  N  N  N  32.092  81.466  67.178  -1.712  -1.165  -2.252  O15   EB4  31  
EB4  C30   C30   C  0  1  N  N  N  31.683  81.259  68.544  -1.304  -2.404  -2.889  C30   EB4  32  
EB4  C24   C24   C  0  1  N  N  S  30.919  79.960  68.835   0.154  -2.704  -2.535  C24   EB4  33  
EB4  C21   C21   C  0  1  N  N  N  31.243  77.659  68.077   1.315  -3.389  -0.505  C21   EB4  34  
EB4  C18   C18   C  0  1  Y  N  N  31.634  76.699  66.992   1.479  -3.374   0.961  C18   EB4  35  
EB4  O9    O9    O  0  1  N  N  N  30.846  77.208  69.141   2.082  -4.032  -1.196  O9    EB4  36  
EB4  C27   C27   C  0  1  N  N  N  29.415  80.118  68.786   1.046  -1.657  -3.150  C27   EB4  37  
EB4  O12   O12   O  0  1  N  N  N  28.792  79.505  67.935   1.110  -1.548  -4.352  O12   EB4  38  
EB4  C28   C28   C  0  1  N  N  N  29.575  82.856  66.800  -1.550   2.256  -2.887  C28   EB4  39  
EB4  O13   O13   O  0  1  N  N  N  28.248  83.350  66.654  -0.249   1.998  -2.297  O13   EB4  40  
EB4  C26   C26   C  0  1  N  N  N  27.100  82.498  66.940   0.778   1.819  -3.143  C26   EB4  41  
EB4  O11   O11   O  0  1  N  N  N  26.369  82.265  65.991   0.596   1.877  -4.336  O11   EB4  42  
EB4  C23   C23   C  0  1  N  N  S  26.767  81.906  68.302   2.159   1.546  -2.604  C23   EB4  43  
EB4  C29   C29   C  0  1  N  N  N  27.848  82.093  69.394   2.602   0.143  -3.024  C29   EB4  44  
EB4  O14   O14   O  0  1  N  N  N  28.658  80.945  69.728   1.769  -0.845  -2.363  O14   EB4  45  
EB4  C20   C20   C  0  1  N  N  N  25.312  80.005  67.726   2.281   2.831  -0.538  C20   EB4  46  
EB4  O8    O8    O  0  1  N  N  N  24.377  80.738  67.447   2.424   3.837  -1.206  O8    EB4  47  
EB4  C17   C17   C  0  1  Y  N  N  25.106  78.526  67.563   2.261   2.921   0.935  C17   EB4  48  
EB4  HO6   HO6   H  0  1  N  N  N  29.242  75.087  64.458   4.485  -4.280   3.639  HO6   EB4  49  
EB4  HO4   HO4   H  0  1  N  N  N  26.703  76.876  62.071  -5.858  -1.615   3.902  HO4   EB4  50  
EB4  HO5   HO5   H  0  1  N  N  N  25.958  75.573  64.835   1.694   5.896   3.738  HO5   EB4  51  
EB4  HN1   HN1   H  0  1  N  N  N  28.554  80.970  65.292  -1.782   1.341  -0.489  HN1   EB4  52  
EB4  H8    H8    H  0  1  N  N  N  24.534  74.733  67.115   2.217   3.140   4.785  H8    EB4  53  
EB4  HN2   HN2   H  0  1  N  N  N  27.211  79.822  68.372   2.025   0.833  -0.609  HN2   EB4  54  
EB4  H9    H9    H  0  1  N  N  N  32.550  74.222  64.176   1.901  -3.319   4.794  H9    EB4  55  
EB4  H10   H10   H  0  1  N  N  N  25.387  81.087  60.615  -1.728   1.099   3.790  H10   EB4  56  
EB4  HO3   HO3   H  0  1  N  N  N  29.182  77.046  66.955   3.093  -5.732   0.641  HO3   EB4  57  
EB4  HN3   HN3   H  0  1  N  N  N  31.665  79.282  66.955  -0.296  -2.177  -0.528  HN3   EB4  58  
EB4  H7    H7    H  0  1  N  N  N  25.177  78.688  61.185  -3.707   0.193   4.936  H7    EB4  59  
EB4  H11   H11   H  0  1  N  N  N  23.143  76.012  68.706   1.961   0.960   3.675  H11   EB4  60  
EB4  HO1   HO1   H  0  1  N  N  N  29.524  78.746  63.605  -6.516   0.225   0.866  HO1   EB4  61  
EB4  HO2   HO2   H  0  1  N  N  N  26.546  78.571  65.054   3.491   5.502   0.632  HO2   EB4  62  
EB4  H12   H12   H  0  1  N  N  N  34.219  74.803  65.904   0.080  -2.045   3.740  H12   EB4  63  
EB4  H15   H15   H  0  1  N  N  N  33.632  76.388  67.713  -0.203  -2.076   1.302  H15   EB4  64  
EB4  H14   H14   H  0  1  N  N  N  23.498  78.443  68.981   1.983   0.807   1.225  H14   EB4  65  
EB4  H13   H13   H  0  1  N  N  N  27.165  82.450  61.662  -1.682   1.265   1.341  H13   EB4  66  
EB4  H22   H22   H  0  1  N  N  N  30.645  83.067  64.927  -3.526   1.400  -2.831  H22   EB4  67  
EB4  H30   H30   H  0  1  N  N  N  32.595  81.246  69.159  -1.938  -3.218  -2.538  H30   EB4  68  
EB4  H30A  H30A  H  0  0  N  N  N  30.981  82.075  68.771  -1.403  -2.306  -3.970  H30A  EB4  69  
EB4  H24   H24   H  0  1  N  N  N  31.170  79.651  69.860   0.427  -3.687  -2.921  H24   EB4  70  
EB4  H28   H28   H  0  1  N  N  N  29.547  82.059  67.558  -1.461   2.269  -3.973  H28   EB4  71  
EB4  H28A  H28A  H  0  0  N  N  N  30.191  83.726  67.070  -1.921   3.221  -2.542  H28A  EB4  72  
EB4  H23   H23   H  0  1  N  N  N  25.891  82.468  68.656   2.857   2.283  -3.004  H23   EB4  73  
EB4  H29   H29   H  0  1  N  N  N  28.533  82.875  69.036   2.503   0.039  -4.104  H29   EB4  74  
EB4  H29A  H29A  H  0  0  N  N  N  27.290  82.328  70.313   3.643  -0.009  -2.739  H29A  EB4  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EB4  O6   C6    SING  N  N   1  
EB4  O6   HO6   SING  N  N   2  
EB4  O4   HO4   SING  N  N   3  
EB4  O5   C5    SING  N  N   4  
EB4  O5   HO5   SING  N  N   5  
EB4  N1   C22   SING  N  N   6  
EB4  N1   HN1   SING  N  N   7  
EB4  C5   C2    DOUB  Y  N   8  
EB4  C5   C8    SING  Y  N   9  
EB4  C4   O4    SING  N  N  10  
EB4  C4   C1    SING  Y  N  11  
EB4  C1   O1    SING  N  N  12  
EB4  C2   C17   SING  Y  N  13  
EB4  C6   C3    SING  Y  N  14  
EB4  C8   C11   DOUB  Y  N  15  
EB4  C8   H8    SING  N  N  16  
EB4  N2   C23   SING  N  N  17  
EB4  N2   HN2   SING  N  N  18  
EB4  C9   C6    DOUB  Y  N  19  
EB4  C9   C12   SING  Y  N  20  
EB4  C9   H9    SING  N  N  21  
EB4  C10  C7    SING  Y  N  22  
EB4  C10  C13   DOUB  Y  N  23  
EB4  C10  H10   SING  N  N  24  
EB4  O3   HO3   SING  N  N  25  
EB4  N3   C21   SING  N  N  26  
EB4  N3   C24   SING  N  N  27  
EB4  N3   HN3   SING  N  N  28  
EB4  C16  C1    DOUB  Y  N  29  
EB4  C16  C19   SING  N  N  30  
EB4  C7   C4    DOUB  Y  N  31  
EB4  C7   H7    SING  N  N  32  
EB4  C3   O3    SING  N  N  33  
EB4  C3   C18   DOUB  Y  N  34  
EB4  C11  C14   SING  Y  N  35  
EB4  C11  H11   SING  N  N  36  
EB4  O1   HO1   SING  N  N  37  
EB4  O2   C2    SING  N  N  38  
EB4  O2   HO2   SING  N  N  39  
EB4  C12  C15   DOUB  Y  N  40  
EB4  C12  H12   SING  N  N  41  
EB4  C15  C18   SING  Y  N  42  
EB4  C15  H15   SING  N  N  43  
EB4  C14  H14   SING  N  N  44  
EB4  C13  C16   SING  Y  N  45  
EB4  C13  H13   SING  N  N  46  
EB4  O7   C19   DOUB  N  N  47  
EB4  C19  N1    SING  N  N  48  
EB4  C22  C25   SING  N  N  49  
EB4  C22  C28   SING  N  N  50  
EB4  C22  H22   SING  N  N  51  
EB4  C25  O15   SING  N  N  52  
EB4  O10  C25   DOUB  N  N  53  
EB4  O15  C30   SING  N  N  54  
EB4  C30  C24   SING  N  N  55  
EB4  C30  H30   SING  N  N  56  
EB4  C30  H30A  SING  N  N  57  
EB4  C24  H24   SING  N  N  58  
EB4  C21  O9    DOUB  N  N  59  
EB4  C18  C21   SING  N  N  60  
EB4  C27  C24   SING  N  N  61  
EB4  C27  O14   SING  N  N  62  
EB4  O12  C27   DOUB  N  N  63  
EB4  C28  H28   SING  N  N  64  
EB4  C28  H28A  SING  N  N  65  
EB4  O13  C28   SING  N  N  66  
EB4  O13  C26   SING  N  N  67  
EB4  C26  C23   SING  N  N  68  
EB4  O11  C26   DOUB  N  N  69  
EB4  C23  C29   SING  N  N  70  
EB4  C23  H23   SING  N  N  71  
EB4  C29  O14   SING  N  N  72  
EB4  C29  H29   SING  N  N  73  
EB4  C29  H29A  SING  N  N  74  
EB4  C20  N2    SING  N  N  75  
EB4  O8   C20   DOUB  N  N  76  
EB4  C17  C14   DOUB  Y  N  77  
EB4  C17  C20   SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EB4  SMILES            ACDLabs               10.04  "O=C2OCC(C(=O)OCC(C(=O)OCC2NC(=O)c1cccc(O)c1O)NC(=O)c3cccc(O)c3O)NC(=O)c4cccc(O)c4O"  
EB4  SMILES_CANONICAL  CACTVS                3.341  "Oc1cccc(C(=O)N[C@H]2COC(=O)[C@H](COC(=O)[C@H](COC2=O)NC(=O)c3cccc(O)c3O)NC(=O)c4cccc(O)c4O)c1O"  
EB4  SMILES            CACTVS                3.341  "Oc1cccc(C(=O)N[CH]2COC(=O)[CH](COC(=O)[CH](COC2=O)NC(=O)c3cccc(O)c3O)NC(=O)c4cccc(O)c4O)c1O"  
EB4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(c(c(c1)O)O)C(=O)N[C@H]2COC(=O)[C@H](COC(=O)[C@H](COC2=O)NC(=O)c3cccc(c3O)O)NC(=O)c4cccc(c4O)O"  
EB4  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(c(c(c1)O)O)C(=O)NC2COC(=O)C(COC(=O)C(COC2=O)NC(=O)c3cccc(c3O)O)NC(=O)c4cccc(c4O)O"  
EB4  InChI             InChI                 1.03   "InChI=1S/C30H27N3O15/c34-19-7-1-4-13(22(19)37)25(40)31-16-10-46-29(44)18(33-27(42)15-6-3-9-21(36)24(15)39)12-48-30(45)17(11-47-28(16)43)32-26(41)14-5-2-8-20(35)23(14)38/h1-9,16-18,34-39H,10-12H2,(H,31,40)(H,32,41)(H,33,42)/t16-,17-,18-/m0/s1"  
EB4  InChIKey          InChI                 1.03   SERBHKJMVBATSJ-BZSNNMDCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EB4  "SYSTEMATIC NAME"  ACDLabs               10.04  "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)"  
EB4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-[(3S,7S,11S)-7,11-bis[(2,3-dihydroxyphenyl)carbonylamino]-2,6,10-trioxo-1,5,9-trioxacyclododec-3-yl]-2,3-dihydroxy-benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EB4  "Create component"   2008-04-08  RCSB  
EB4  "Modify descriptor"  2011-06-04  RCSB  
EB4  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     EB4
_pdbx_chem_comp_synonyms.name        Enterobactin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
