data_FF4
# 
_chem_comp.id                                    FF4 
_chem_comp.name                                  "2'-deoxy-5'-O-[(R)-{[(R)-[(S)-fluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H17 F N3 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-03-27 
_chem_comp.pdbx_modified_date                    2018-06-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        483.175 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FF4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CTR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FF4 C4    C1  C 0 1 N N N 9.325  7.550  10.995 -6.792 -2.615 0.416  C4    FF4 1  
FF4 N4    N1  N 0 1 N N N 10.781 7.567  11.249 -7.584 -3.595 0.969  N4    FF4 2  
FF4 C5    C2  C 0 1 N N N 8.464  7.156  12.016 -6.600 -2.562 -0.980 C5    FF4 3  
FF4 C6    C3  C 0 1 N N N 7.091  7.133  11.732 -5.815 -1.588 -1.497 C6    FF4 4  
FF4 N3    N2  N 0 1 N N N 8.846  7.907  9.800  -6.208 -1.712 1.193  N3    FF4 5  
FF4 C2    C4  C 0 1 N N N 7.534  7.862  9.579  -5.439 -0.760 0.669  C2    FF4 6  
FF4 O2    O1  O 0 1 N N N 7.108  8.178  8.488  -4.912 0.059  1.404  O2    FF4 7  
FF4 N1    N3  N 0 1 N N N 6.676  7.489  10.523 -5.232 -0.686 -0.659 N1    FF4 8  
FF4 "C1'" C5  C 0 1 N N R 5.218  7.427  10.207 -4.380 0.373  -1.206 "C1'" FF4 9  
FF4 "C2'" C6  C 0 1 N N N 4.937  6.237  9.794  -4.980 1.761  -0.893 "C2'" FF4 10 
FF4 "C3'" C7  C 0 1 N N S 4.412  5.485  11.041 -3.747 2.647  -0.606 "C3'" FF4 11 
FF4 "O3'" O2  O 0 1 N N N 3.623  4.397  10.750 -3.671 3.720  -1.547 "O3'" FF4 12 
FF4 "O4'" O3  O 0 1 N N N 4.429  7.634  11.566 -3.092 0.371  -0.552 "O4'" FF4 13 
FF4 "C4'" C8  C 0 1 N N R 3.648  6.608  11.711 -2.548 1.689  -0.780 "C4'" FF4 14 
FF4 "C5'" C9  C 0 1 N N N 3.425  6.333  13.268 -1.462 2.002  0.251  "C5'" FF4 15 
FF4 "O5'" O4  O 0 1 N N N 4.688  6.221  13.879 -0.316 1.185  0.000  "O5'" FF4 16 
FF4 PA    P1  P 0 1 N N N 4.948  4.962  14.898 1.020  1.250  0.895  PA    FF4 17 
FF4 O1A   O5  O 0 1 N N N 3.872  4.932  15.962 0.689  0.755  2.391  O1A   FF4 18 
FF4 O2A   O6  O 0 1 N N N 6.352  5.046  15.430 1.520  2.642  0.935  O2A   FF4 19 
FF4 O3A   O7  O 0 1 N N N 4.887  3.621  13.919 2.145  0.294  0.251  O3A   FF4 20 
FF4 PB    P2  P 0 1 N N N 3.771  2.446  13.858 3.734  0.142  0.455  PB    FF4 21 
FF4 O1B   O8  O 0 1 N N N 2.440  2.881  14.412 4.458  1.532  0.089  O1B   FF4 22 
FF4 O2B   O9  O 0 1 N N N 3.707  2.106  12.398 4.019  -0.206 1.865  O2B   FF4 23 
FF4 C3B   C10 C 0 1 N N S 4.469  0.925  14.747 4.364  -1.177 -0.635 C3B   FF4 24 
FF4 F4B   F1  F 0 1 N N N 5.795  1.138  14.839 4.094  -0.848 -1.968 F4B   FF4 25 
FF4 PG    P3  P 0 1 N N N 3.787  0.806  16.450 6.163  -1.349 -0.403 PG    FF4 26 
FF4 O1G   O10 O 0 1 N N N 4.788  0.111  17.311 6.720  -2.514 -1.366 O1G   FF4 27 
FF4 O2G   O11 O 0 1 N N N 3.537  2.218  16.947 6.887  0.041  -0.770 O2G   FF4 28 
FF4 O3G   O12 O 0 1 N N N 2.509  0.050  16.449 6.448  -1.697 1.007  O3G   FF4 29 
FF4 H1    H1  H 0 1 N N N 11.412 7.846  10.525 -8.013 -4.251 0.398  H1    FF4 30 
FF4 H2    H2  H 0 1 N N N 11.135 7.299  12.145 -7.714 -3.628 1.929  H2    FF4 31 
FF4 H3    H3  H 0 1 N N N 8.840  6.879  12.990 -7.071 -3.288 -1.626 H3    FF4 32 
FF4 H4    H4  H 0 1 N N N 6.381  6.830  12.487 -5.652 -1.527 -2.563 H4    FF4 33 
FF4 H5    H5  H 0 1 N N N 4.941  8.223  9.500  -4.259 0.244  -2.282 H5    FF4 34 
FF4 H6    H6  H 0 1 N N N 4.164  6.273  9.012  -5.532 2.142  -1.752 H6    FF4 35 
FF4 H7    H7  H 0 1 N N N 5.837  5.744  9.398  -5.625 1.709  -0.016 H7    FF4 36 
FF4 H8    H8  H 0 1 N N N 5.268  5.201  11.671 -3.783 3.033  0.413  H8    FF4 37 
FF4 H9    H9  H 0 1 N N N 3.770  3.717  11.397 -4.430 4.319  -1.522 H9    FF4 38 
FF4 H10   H10 H 0 1 N N N 2.667  6.734  11.229 -2.146 1.764  -1.790 H10   FF4 39 
FF4 H11   H11 H 0 1 N N N 2.866  7.167  13.717 -1.182 3.053  0.176  H11   FF4 40 
FF4 H12   H12 H 0 1 N N N 2.861  5.398  13.404 -1.841 1.798  1.253  H12   FF4 41 
FF4 H13   H13 H 0 1 N N N 4.275  4.973  16.821 0.356  -0.151 2.441  H13   FF4 42 
FF4 H14   H14 H 0 1 N N N 1.787  2.861  13.722 4.314  1.822  -0.822 H14   FF4 43 
FF4 H15   H15 H 0 1 N N N 4.164  0.031  14.183 3.874  -2.118 -0.387 H15   FF4 44 
FF4 H16   H16 H 0 1 N N N 4.399  -0.673 17.681 7.673  -2.661 -1.295 H16   FF4 45 
FF4 H17   H17 H 0 1 N N N 2.616  2.323  17.153 6.744  0.331  -1.681 H17   FF4 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FF4 O2    C2    DOUB N N 1  
FF4 C2    N3    SING N N 2  
FF4 C2    N1    SING N N 3  
FF4 "C2'" "C1'" SING N N 4  
FF4 "C2'" "C3'" SING N N 5  
FF4 N3    C4    DOUB N N 6  
FF4 "C1'" N1    SING N N 7  
FF4 "C1'" "O4'" SING N N 8  
FF4 N1    C6    SING N N 9  
FF4 "O3'" "C3'" SING N N 10 
FF4 C4    N4    SING N N 11 
FF4 C4    C5    SING N N 12 
FF4 "C3'" "C4'" SING N N 13 
FF4 "O4'" "C4'" SING N N 14 
FF4 "C4'" "C5'" SING N N 15 
FF4 C6    C5    DOUB N N 16 
FF4 O2B   PB    DOUB N N 17 
FF4 "C5'" "O5'" SING N N 18 
FF4 PB    O3A   SING N N 19 
FF4 PB    O1B   SING N N 20 
FF4 PB    C3B   SING N N 21 
FF4 "O5'" PA    SING N N 22 
FF4 O3A   PA    SING N N 23 
FF4 C3B   F4B   SING N N 24 
FF4 C3B   PG    SING N N 25 
FF4 PA    O2A   DOUB N N 26 
FF4 PA    O1A   SING N N 27 
FF4 O3G   PG    DOUB N N 28 
FF4 PG    O2G   SING N N 29 
FF4 PG    O1G   SING N N 30 
FF4 N4    H1    SING N N 31 
FF4 N4    H2    SING N N 32 
FF4 C5    H3    SING N N 33 
FF4 C6    H4    SING N N 34 
FF4 "C1'" H5    SING N N 35 
FF4 "C2'" H6    SING N N 36 
FF4 "C2'" H7    SING N N 37 
FF4 "C3'" H8    SING N N 38 
FF4 "O3'" H9    SING N N 39 
FF4 "C4'" H10   SING N N 40 
FF4 "C5'" H11   SING N N 41 
FF4 "C5'" H12   SING N N 42 
FF4 O1A   H13   SING N N 43 
FF4 O1B   H14   SING N N 44 
FF4 C3B   H15   SING N N 45 
FF4 O1G   H16   SING N N 46 
FF4 O2G   H17   SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FF4 SMILES           ACDLabs              12.01 "C=1(N)C=CN(C(N=1)=O)C2OC(C(C2)O)COP(=O)(O)OP(O)(C(F)P(O)(O)=O)=O"                                                                                                                                   
FF4 InChI            InChI                1.03  "InChI=1S/C10H17FN3O12P3/c11-9(27(17,18)19)28(20,21)26-29(22,23)24-4-6-5(15)3-8(25-6)14-2-1-7(12)13-10(14)16/h1-2,5-6,8-9,15H,3-4H2,(H,20,21)(H,22,23)(H2,12,13,16)(H2,17,18,19)/t5-,6+,8+,9-/m0/s1" 
FF4 InChIKey         InChI                1.03  CDDSHZIEMFLZDN-LWIVVEGESA-N                                                                                                                                                                          
FF4 SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@@H](F)[P](O)(O)=O)O2"                                                                                                              
FF4 SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[CH](F)[P](O)(O)=O)O2"                                                                                                                    
FF4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)([C@@H](F)P(=O)(O)O)O)O"                                                                                                                      
FF4 SMILES           "OpenEye OEToolkits" 2.0.6 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(C(F)P(=O)(O)O)O)O"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FF4 "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(R)-{[(R)-[(S)-fluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine"                                                                              
FF4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(~{S})-[[[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]-fluoranyl-methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FF4 "Create component" 2018-03-27 RCSB 
FF4 "Initial release"  2018-06-20 RCSB 
# 
