data_GD4
#

_chem_comp.id                                   GD4
_chem_comp.name                                 "(5S)-5-[(4-{[(2R)-6-hydroxy-2,5,7,8-tetramethyl-3,4-dihydro-2H-1-benzopyran-2-yl]methoxy}phenyl)methyl]-1,3-thiazolidine-2,4-dione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H27 N O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Troglitazone (isoform)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-05-18
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       441.540
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GD4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DGO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GD4  CAM  C1   C  0  1  N  N  N  16.268  62.248   9.690   2.952   2.205   0.499  CAM  GD4   1  
GD4  CAL  C2   C  0  1  N  N  N  15.054  63.042  10.079   4.385   2.373  -0.011  CAL  GD4   2  
GD4  CBB  C3   C  0  1  Y  N  N  15.174  64.507   9.594   5.105   1.050   0.052  CBB  GD4   3  
GD4  CAZ  C4   C  0  1  Y  N  N  14.013  65.290   9.456   6.489   1.042  -0.001  CAZ  GD4   4  
GD4  CAC  C5   C  0  1  N  N  N  12.650  64.691   9.789   7.243   2.342  -0.115  CAC  GD4   5  
GD4  CBA  C6   C  0  1  Y  N  N  14.109  66.614   9.016   7.183  -0.156   0.049  CBA  GD4   6  
GD4  OAG  O1   O  0  1  N  N  N  12.956  67.395   8.880   8.542  -0.159  -0.003  OAG  GD4   7  
GD4  CAX  C7   C  0  1  Y  N  N  15.369  67.165   8.710   6.489  -1.353   0.154  CAX  GD4   8  
GD4  CAA  C8   C  0  1  N  N  N  15.468  68.612   8.230   7.240  -2.658   0.208  CAA  GD4   9  
GD4  CAY  C9   C  0  1  Y  N  N  16.521  66.389   8.847   5.111  -1.346   0.209  CAY  GD4  10  
GD4  CAB  C10  C  0  1  N  N  N  17.880  66.990   8.510   4.358  -2.646   0.325  CAB  GD4  11  
GD4  CBC  C11  C  0  1  Y  N  N  16.430  65.049   9.292   4.412  -0.143   0.160  CBC  GD4  12  
GD4  OAR  O2   O  0  1  N  N  N  17.644  64.277   9.414   3.055  -0.180   0.224  OAR  GD4  13  
GD4  CBE  C12  C  0  1  N  N  R  17.543  62.998  10.005   2.336   0.982  -0.192  CBE  GD4  14  
GD4  CAD  C13  C  0  1  N  N  N  18.727  62.158   9.548   2.443   1.139  -1.710  CAD  GD4  15  
GD4  CAN  C14  C  0  1  N  N  N  17.623  63.151  11.537   0.865   0.849   0.211  CAN  GD4  16  
GD4  OAQ  O3   O  0  1  N  N  N  17.737  61.878  12.100   0.296  -0.291  -0.435  OAQ  GD4  17  
GD4  CAW  C15  C  0  1  Y  N  N  18.231  61.950  13.401  -1.013  -0.553  -0.182  CAW  GD4  18  
GD4  CAK  C16  C  0  1  Y  N  N  17.359  62.109  14.459  -1.737   0.273   0.665  CAK  GD4  19  
GD4  CAI  C17  C  0  1  Y  N  N  17.854  62.191  15.745  -3.067   0.005   0.920  CAI  GD4  20  
GD4  CAJ  C18  C  0  1  Y  N  N  19.592  61.879  13.616  -1.630  -1.645  -0.776  CAJ  GD4  21  
GD4  CAH  C19  C  0  1  Y  N  N  20.088  61.961  14.901  -2.962  -1.909  -0.518  CAH  GD4  22  
GD4  CAV  C20  C  0  1  Y  N  N  19.218  62.115  15.959  -3.679  -1.087   0.332  CAV  GD4  23  
GD4  CAO  C21  C  0  1  N  N  N  19.769  62.211  17.374  -5.130  -1.378   0.613  CAO  GD4  24  
GD4  CBD  C22  C  0  1  N  N  S  19.460  63.604  17.883  -6.003  -0.658  -0.417  CBD  GD4  25  
GD4  SAS  S1   S  0  1  N  N  N  20.805  64.264  18.579  -5.882   1.151  -0.212  SAS  GD4  26  
GD4  CAT  C23  C  0  1  N  N  N  20.402  64.648  20.110  -7.604   1.358   0.155  CAT  GD4  27  
GD4  OAE  O4   O  0  1  N  N  N  21.089  65.223  20.883  -8.165   2.408   0.399  OAE  GD4  28  
GD4  NAP  N1   N  0  1  N  N  N  18.928  64.122  20.391  -8.175   0.152   0.116  NAP  GD4  29  
GD4  CAU  C24  C  0  1  N  N  N  18.324  63.490  19.055  -7.469  -0.932  -0.161  CAU  GD4  30  
GD4  OAF  O5   O  0  1  N  N  N  17.249  63.014  18.927  -7.952  -2.043  -0.206  OAF  GD4  31  
GD4  H1   H1   H  0  1  N  N  N  16.231  62.044   8.610   2.961   2.052   1.578  H1   GD4  32  
GD4  H2   H2   H  0  1  N  N  N  16.266  61.297  10.243   2.370   3.095   0.259  H2   GD4  33  
GD4  H3   H3   H  0  1  N  N  N  14.953  63.032  11.174   4.365   2.726  -1.041  H3   GD4  34  
GD4  H4   H4   H  0  1  N  N  N  14.163  62.584   9.625   4.909   3.099   0.611  H4   GD4  35  
GD4  H5   H5   H  0  1  N  N  N  12.223  64.227   8.888   7.465   2.721   0.883  H5   GD4  36  
GD4  H6   H6   H  0  1  N  N  N  12.766  63.929  10.573   8.175   2.175  -0.655  H6   GD4  37  
GD4  H7   H7   H  0  1  N  N  N  11.978  65.485  10.146   6.635   3.069  -0.653  H7   GD4  38  
GD4  H8   H8   H  0  1  N  N  N  12.195  66.882   9.123   8.969  -0.103   0.863  H8   GD4  39  
GD4  H9   H9   H  0  1  N  N  N  15.393  68.641   7.133   7.379  -3.039  -0.804  H9   GD4  40  
GD4  H10  H10  H  0  1  N  N  N  14.649  69.201   8.669   8.212  -2.499   0.673  H10  GD4  41  
GD4  H11  H11  H  0  1  N  N  N  16.433  69.037   8.543   6.670  -3.381   0.793  H11  GD4  42  
GD4  H12  H12  H  0  1  N  N  N  18.309  67.455   9.410   4.218  -2.893   1.377  H12  GD4  43  
GD4  H13  H13  H  0  1  N  N  N  18.553  66.197   8.151   3.385  -2.547  -0.158  H13  GD4  44  
GD4  H14  H14  H  0  1  N  N  N  17.760  67.751   7.725   4.926  -3.439  -0.162  H14  GD4  45  
GD4  H15  H15  H  0  1  N  N  N  18.663  61.157  10.000   3.492   1.224  -1.993  H15  GD4  46  
GD4  H16  H16  H  0  1  N  N  N  18.710  62.067   8.452   2.004   0.269  -2.197  H16  GD4  47  
GD4  H17  H17  H  0  1  N  N  N  19.663  62.643   9.861   1.909   2.037  -2.021  H17  GD4  48  
GD4  H18  H18  H  0  1  N  N  N  18.502  63.756  11.805   0.794   0.728   1.292  H18  GD4  49  
GD4  H19  H19  H  0  1  N  N  N  16.712  63.642  11.910   0.324   1.746  -0.091  H19  GD4  50  
GD4  H20  H20  H  0  1  N  N  N  16.295  62.169  14.282  -1.260   1.126   1.125  H20  GD4  51  
GD4  H21  H21  H  0  1  N  N  N  17.180  62.314  16.580  -3.631   0.648   1.580  H21  GD4  52  
GD4  H22  H22  H  0  1  N  N  N  20.267  61.760  12.781  -1.071  -2.287  -1.440  H22  GD4  53  
GD4  H23  H23  H  0  1  N  N  N  21.152  61.905  15.077  -3.442  -2.759  -0.980  H23  GD4  54  
GD4  H24  H24  H  0  1  N  N  N  19.288  61.460  18.017  -5.305  -2.453   0.549  H24  GD4  55  
GD4  H25  H25  H  0  1  N  N  N  20.856  62.045  17.367  -5.384  -1.028   1.613  H25  GD4  56  
GD4  H26  H26  H  0  1  N  N  N  19.101  64.259  17.076  -5.724  -0.951  -1.429  H26  GD4  57  
GD4  H27  H27  H  0  1  N  N  N  18.453  64.178  21.269  -9.124   0.068   0.293  H27  GD4  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GD4  CAA  CAX  SING  N  N   1  
GD4  CAB  CAY  SING  N  N   2  
GD4  CAX  CAY  DOUB  Y  N   3  
GD4  CAX  CBA  SING  Y  N   4  
GD4  CAY  CBC  SING  Y  N   5  
GD4  OAG  CBA  SING  N  N   6  
GD4  CBA  CAZ  DOUB  Y  N   7  
GD4  CBC  OAR  SING  N  N   8  
GD4  CBC  CBB  DOUB  Y  N   9  
GD4  OAR  CBE  SING  N  N  10  
GD4  CAZ  CBB  SING  Y  N  11  
GD4  CAZ  CAC  SING  N  N  12  
GD4  CAD  CBE  SING  N  N  13  
GD4  CBB  CAL  SING  N  N  14  
GD4  CAM  CBE  SING  N  N  15  
GD4  CAM  CAL  SING  N  N  16  
GD4  CBE  CAN  SING  N  N  17  
GD4  CAN  OAQ  SING  N  N  18  
GD4  OAQ  CAW  SING  N  N  19  
GD4  CAW  CAJ  DOUB  Y  N  20  
GD4  CAW  CAK  SING  Y  N  21  
GD4  CAJ  CAH  SING  Y  N  22  
GD4  CAK  CAI  DOUB  Y  N  23  
GD4  CAH  CAV  DOUB  Y  N  24  
GD4  CAI  CAV  SING  Y  N  25  
GD4  CAV  CAO  SING  N  N  26  
GD4  CAO  CBD  SING  N  N  27  
GD4  CBD  SAS  SING  N  N  28  
GD4  CBD  CAU  SING  N  N  29  
GD4  SAS  CAT  SING  N  N  30  
GD4  OAF  CAU  DOUB  N  N  31  
GD4  CAU  NAP  SING  N  N  32  
GD4  CAT  NAP  SING  N  N  33  
GD4  CAT  OAE  DOUB  N  N  34  
GD4  CAM  H1   SING  N  N  35  
GD4  CAM  H2   SING  N  N  36  
GD4  CAL  H3   SING  N  N  37  
GD4  CAL  H4   SING  N  N  38  
GD4  CAC  H5   SING  N  N  39  
GD4  CAC  H6   SING  N  N  40  
GD4  CAC  H7   SING  N  N  41  
GD4  OAG  H8   SING  N  N  42  
GD4  CAA  H9   SING  N  N  43  
GD4  CAA  H10  SING  N  N  44  
GD4  CAA  H11  SING  N  N  45  
GD4  CAB  H12  SING  N  N  46  
GD4  CAB  H13  SING  N  N  47  
GD4  CAB  H14  SING  N  N  48  
GD4  CAD  H15  SING  N  N  49  
GD4  CAD  H16  SING  N  N  50  
GD4  CAD  H17  SING  N  N  51  
GD4  CAN  H18  SING  N  N  52  
GD4  CAN  H19  SING  N  N  53  
GD4  CAK  H20  SING  N  N  54  
GD4  CAI  H21  SING  N  N  55  
GD4  CAJ  H22  SING  N  N  56  
GD4  CAH  H23  SING  N  N  57  
GD4  CAO  H24  SING  N  N  58  
GD4  CAO  H25  SING  N  N  59  
GD4  CBD  H26  SING  N  N  60  
GD4  NAP  H27  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GD4  SMILES            ACDLabs               12.01  "C1C(Oc2c(C1)c(C)c(O)c(c2C)C)(COc3ccc(cc3)CC4SC(NC4=O)=O)C"  
GD4  InChI             InChI                 1.03   "InChI=1S/C24H27NO5S/c1-13-14(2)21-18(15(3)20(13)26)9-10-24(4,30-21)12-29-17-7-5-16(6-8-17)11-19-22(27)25-23(28)31-19/h5-8,19,26H,9-12H2,1-4H3,(H,25,27,28)/t19-,24+/m0/s1"  
GD4  InChIKey          InChI                 1.03   GXPHKUHSUJUWKP-YADARESESA-N  
GD4  SMILES_CANONICAL  CACTVS                3.385  "Cc1c(C)c2O[C@](C)(CCc2c(C)c1O)COc3ccc(C[C@@H]4SC(=O)NC4=O)cc3"  
GD4  SMILES            CACTVS                3.385  "Cc1c(C)c2O[C](C)(CCc2c(C)c1O)COc3ccc(C[CH]4SC(=O)NC4=O)cc3"  
GD4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1c(c2c(c(c1O)C)CC[C@](O2)(C)COc3ccc(cc3)C[C@H]4C(=O)NC(=O)S4)C"  
GD4  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1c(c2c(c(c1O)C)CCC(O2)(C)COc3ccc(cc3)CC4C(=O)NC(=O)S4)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GD4  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5S)-5-[(4-{[(2R)-6-hydroxy-2,5,7,8-tetramethyl-3,4-dihydro-2H-1-benzopyran-2-yl]methoxy}phenyl)methyl]-1,3-thiazolidine-2,4-dione"  
GD4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(5~{S})-5-[[4-[[(2~{R})-2,5,7,8-tetramethyl-6-oxidanyl-3,4-dihydrochromen-2-yl]methoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GD4  "Create component"  2018-05-18  RCSB  
GD4  "Modify name"       2018-05-18  RCSB  
GD4  "Initial release"   2019-05-22  RCSB  
GD4  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GD4
_pdbx_chem_comp_synonyms.name        "Troglitazone (isoform)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
