data_LR4
# 
_chem_comp.id                                    LR4 
_chem_comp.name                                  "(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 N7 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(4S)-2-azanyl-4-[3-[6-[(2S)-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-11 
_chem_comp.pdbx_modified_date                    2023-06-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        449.572 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LR4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AZR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LR4 C4  C1  C 0 1 N N S 18.020 0.054  6.123 -3.338 -1.285 -0.770 C4  LR4 1  
LR4 C5  C2  C 0 1 Y N N 16.138 0.297  4.424 -5.089 0.012  0.495  C5  LR4 2  
LR4 C6  C3  C 0 1 Y N N 17.160 -0.427 4.956 -3.989 -0.006 -0.266 C6  LR4 3  
LR4 C7  C4  C 0 1 Y N N 17.270 -1.713 4.352 -3.492 1.328  -0.554 C7  LR4 4  
LR4 C8  C5  C 0 1 Y N N 16.316 -1.940 3.362 -4.247 2.319  0.008  C8  LR4 5  
LR4 C10 C6  C 0 1 N N N 17.668 -0.756 7.385 -3.696 -1.498 -2.242 C10 LR4 6  
LR4 C17 C7  C 0 1 Y N N 22.831 -1.113 6.090 1.276  -0.664 1.029  C17 LR4 7  
LR4 C20 C8  C 0 1 Y N N 25.255 -2.137 6.839 3.408  -0.191 2.665  C20 LR4 8  
LR4 C21 C9  C 0 1 Y N N 24.106 -2.577 7.470 2.142  -0.231 3.221  C21 LR4 9  
LR4 C22 C10 C 0 1 Y N N 22.878 -2.068 7.098 1.059  -0.472 2.389  C22 LR4 10 
LR4 C26 C11 C 0 1 N N S 26.095 0.393  4.110 4.760  -0.564 -0.725 C26 LR4 11 
LR4 C1  C12 C 0 1 N N N 15.679 1.644  4.901 -5.830 -1.228 0.957  C1  LR4 12 
LR4 C11 C13 C 0 1 Y N N 19.503 -0.111 5.760 -1.841 -1.184 -0.623 C11 LR4 13 
LR4 C14 C14 C 0 1 Y N N 21.532 -0.536 5.685 0.124  -0.923 0.130  C14 LR4 14 
LR4 C19 C15 C 0 1 Y N N 25.128 -1.160 5.816 3.556  -0.381 1.293  C19 LR4 15 
LR4 C2  C16 C 0 1 N N N 16.252 1.915  6.300 -5.387 -2.415 0.097  C2  LR4 16 
LR4 C23 C17 C 0 1 N N N 18.258 -2.697 4.673 -2.327 1.580  -1.348 C23 LR4 17 
LR4 C27 C18 C 0 1 N N N 26.962 0.206  2.848 6.179  -0.593 -1.298 C27 LR4 18 
LR4 C29 C19 C 0 1 N N N 28.372 -1.423 4.028 6.918  0.899  0.459  C29 LR4 19 
LR4 C3  C20 C 0 1 N N N 17.737 1.563  6.354 -3.856 -2.461 0.060  C3  LR4 20 
LR4 C30 C21 C 0 1 N N N 27.598 -1.224 5.339 5.499  0.928  1.032  C30 LR4 21 
LR4 C31 C22 C 0 1 N N N 29.238 -0.274 2.017 8.194  0.718  -1.591 C31 LR4 22 
LR4 C32 C23 C 0 1 N N N 26.353 1.740  4.768 3.967  0.569  -1.380 C32 LR4 23 
LR4 N13 N1  N 0 1 Y N N 21.348 0.178  4.607 0.183  -1.218 -1.143 N13 LR4 24 
LR4 N15 N2  N 0 1 Y N N 20.390 -0.742 6.440 -1.184 -0.902 0.474  N15 LR4 25 
LR4 N16 N3  N 0 1 N N N 16.137 -3.044 2.608 -3.987 3.673  -0.117 N16 LR4 26 
LR4 N18 N4  N 0 1 Y N N 23.926 -0.661 5.454 2.504  -0.614 0.526  N18 LR4 27 
LR4 N24 N5  N 0 1 N N N 19.061 -3.489 4.886 -1.403 1.779  -1.977 N24 LR4 28 
LR4 N25 N6  N 0 1 N N N 26.234 -0.710 5.085 4.824  -0.342 0.726  N25 LR4 29 
LR4 N28 N7  N 0 1 N N N 28.371 -0.162 3.227 6.853  0.677  -0.992 N28 LR4 30 
LR4 O12 O1  O 0 1 Y N N 19.953 0.474  4.646 -0.934 -1.372 -1.588 O12 LR4 31 
LR4 S9  S1  S 0 1 Y N N 15.290 -0.564 3.175 -5.551 1.661  0.882  S9  LR4 32 
LR4 H1  H1  H 0 1 N N N 18.286 -0.411 8.227 -4.779 -1.565 -2.346 H1  LR4 33 
LR4 H2  H2  H 0 1 N N N 16.605 -0.612 7.628 -3.326 -0.659 -2.831 H2  LR4 34 
LR4 H3  H3  H 0 1 N N N 17.861 -1.823 7.201 -3.238 -2.421 -2.597 H3  LR4 35 
LR4 H4  H4  H 0 1 N N N 26.223 -2.526 7.117 4.272  -0.013 3.287  H4  LR4 36 
LR4 H5  H5  H 0 1 N N N 24.169 -3.318 8.253 2.001  -0.087 4.282  H5  LR4 37 
LR4 H6  H6  H 0 1 N N N 21.973 -2.405 7.581 0.057  -0.509 2.793  H6  LR4 38 
LR4 H7  H7  H 0 1 N N N 25.048 0.400  3.772 4.267  -1.516 -0.925 H7  LR4 39 
LR4 H8  H8  H 0 1 N N N 16.031 2.419  4.204 -5.594 -1.426 2.003  H8  LR4 40 
LR4 H9  H9  H 0 1 N N N 14.580 1.662  4.945 -6.903 -1.075 0.844  H9  LR4 41 
LR4 H10 H10 H 0 1 N N N 16.125 2.980  6.542 -5.769 -3.340 0.528  H10 LR4 42 
LR4 H11 H11 H 0 1 N N N 15.709 1.304  7.037 -5.772 -2.296 -0.915 H11 LR4 43 
LR4 H12 H12 H 0 1 N N N 26.975 1.145  2.275 6.735  -1.417 -0.850 H12 LR4 44 
LR4 H13 H13 H 0 1 N N N 26.532 -0.596 2.229 6.132  -0.729 -2.378 H13 LR4 45 
LR4 H14 H14 H 0 1 N N N 27.896 -2.224 3.444 7.410  1.851  0.660  H14 LR4 46 
LR4 H15 H15 H 0 1 N N N 29.410 -1.705 4.259 7.482  0.092  0.927  H15 LR4 47 
LR4 H16 H16 H 0 1 N N N 18.126 1.844  7.344 -3.531 -3.398 -0.393 H16 LR4 48 
LR4 H17 H17 H 0 1 N N N 18.261 2.139  5.577 -3.465 -2.391 1.075  H17 LR4 49 
LR4 H18 H18 H 0 1 N N N 27.526 -2.189 5.862 5.545  1.064  2.112  H18 LR4 50 
LR4 H19 H19 H 0 1 N N N 28.140 -0.504 5.970 4.943  1.752  0.585  H19 LR4 51 
LR4 H20 H20 H 0 1 N N N 30.260 -0.543 2.321 8.111  0.618  -2.673 H20 LR4 52 
LR4 H21 H21 H 0 1 N N N 28.837 -1.051 1.350 8.671  1.668  -1.349 H21 LR4 53 
LR4 H22 H22 H 0 1 N N N 29.255 0.690  1.488 8.794  -0.101 -1.195 H22 LR4 54 
LR4 H23 H23 H 0 1 N N N 25.720 1.839  5.662 4.461  1.520  -1.181 H23 LR4 55 
LR4 H24 H24 H 0 1 N N N 27.412 1.809  5.059 3.920  0.403  -2.457 H24 LR4 56 
LR4 H25 H25 H 0 1 N N N 26.114 2.546  4.059 2.957  0.590  -0.971 H25 LR4 57 
LR4 H26 H26 H 0 1 N N N 15.365 -2.903 1.988 -3.223 3.974  -0.633 H26 LR4 58 
LR4 H27 H27 H 0 1 N N N 16.965 -3.222 2.075 -4.568 4.320  0.312  H27 LR4 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LR4 C31 N28 SING N N 1  
LR4 N16 C8  SING N N 2  
LR4 C27 N28 SING N N 3  
LR4 C27 C26 SING N N 4  
LR4 S9  C8  SING Y N 5  
LR4 S9  C5  SING Y N 6  
LR4 N28 C29 SING N N 7  
LR4 C8  C7  DOUB Y N 8  
LR4 C29 C30 SING N N 9  
LR4 C26 C32 SING N N 10 
LR4 C26 N25 SING N N 11 
LR4 C7  C23 SING N N 12 
LR4 C7  C6  SING Y N 13 
LR4 C5  C1  SING N N 14 
LR4 C5  C6  DOUB Y N 15 
LR4 N13 O12 SING Y N 16 
LR4 N13 C14 DOUB Y N 17 
LR4 O12 C11 SING Y N 18 
LR4 C23 N24 TRIP N N 19 
LR4 C1  C2  SING N N 20 
LR4 C6  C4  SING N N 21 
LR4 N25 C30 SING N N 22 
LR4 N25 C19 SING N N 23 
LR4 N18 C19 DOUB Y N 24 
LR4 N18 C17 SING Y N 25 
LR4 C14 C17 SING N N 26 
LR4 C14 N15 SING Y N 27 
LR4 C11 C4  SING N N 28 
LR4 C11 N15 DOUB Y N 29 
LR4 C19 C20 SING Y N 30 
LR4 C17 C22 DOUB Y N 31 
LR4 C4  C3  SING N N 32 
LR4 C4  C10 SING N N 33 
LR4 C2  C3  SING N N 34 
LR4 C20 C21 DOUB Y N 35 
LR4 C22 C21 SING Y N 36 
LR4 C10 H1  SING N N 37 
LR4 C10 H2  SING N N 38 
LR4 C10 H3  SING N N 39 
LR4 C20 H4  SING N N 40 
LR4 C21 H5  SING N N 41 
LR4 C22 H6  SING N N 42 
LR4 C26 H7  SING N N 43 
LR4 C1  H8  SING N N 44 
LR4 C1  H9  SING N N 45 
LR4 C2  H10 SING N N 46 
LR4 C2  H11 SING N N 47 
LR4 C27 H12 SING N N 48 
LR4 C27 H13 SING N N 49 
LR4 C29 H14 SING N N 50 
LR4 C29 H15 SING N N 51 
LR4 C3  H16 SING N N 52 
LR4 C3  H17 SING N N 53 
LR4 C30 H18 SING N N 54 
LR4 C30 H19 SING N N 55 
LR4 C31 H20 SING N N 56 
LR4 C31 H21 SING N N 57 
LR4 C31 H22 SING N N 58 
LR4 C32 H23 SING N N 59 
LR4 C32 H24 SING N N 60 
LR4 C32 H25 SING N N 61 
LR4 N16 H26 SING N N 62 
LR4 N16 H27 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LR4 InChI            InChI                1.06    "InChI=1S/C23H27N7OS/c1-14-13-29(3)10-11-30(14)18-8-4-6-16(26-18)21-27-22(31-28-21)23(2)9-5-7-17-19(23)15(12-24)20(25)32-17/h4,6,8,14H,5,7,9-11,13,25H2,1-3H3/t14-,23-/m0/s1" 
LR4 InChIKey         InChI                1.06    YZNVUBRDUJUVPB-PSLXWICFSA-N                                                                                                                                                   
LR4 SMILES_CANONICAL CACTVS               3.385   "C[C@H]1CN(C)CCN1c2cccc(n2)c3noc(n3)[C@@]4(C)CCCc5sc(N)c(C#N)c45"                                                                                                             
LR4 SMILES           CACTVS               3.385   "C[CH]1CN(C)CCN1c2cccc(n2)c3noc(n3)[C]4(C)CCCc5sc(N)c(C#N)c45"                                                                                                                
LR4 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1CN(CCN1c2cccc(n2)c3nc(on3)[C@]4(CCCc5c4c(c(s5)N)C#N)C)C"                                                                                                              
LR4 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC1CN(CCN1c2cccc(n2)c3nc(on3)C4(CCCc5c4c(c(s5)N)C#N)C)C"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           LR4 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LR4 
_pdbx_chem_comp_synonyms.name         "(4S)-2-azanyl-4-[3-[6-[(2S)-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LR4 "Create component" 2022-09-12 PDBE 
LR4 "Initial release"  2023-06-07 RCSB 
# 
