data_ML4
#

_chem_comp.id                                   ML4
_chem_comp.name                                 "4-(5-{[(2'-methylbiphenyl-2-yl)methyl]amino}pyrazin-2-yl)-L-phenylalanine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H26 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(S)-2-Amino-3-(4-{5-[(2'-methyl-biphenyl-2-ylmethyl)-amino]-pyrazin-2-yl}-phenyl)-propionic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-05-31
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       438.521
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ML4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3HFB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ML4  O3    O3    O  0  1  N  N  N  16.063   5.986  19.223   -9.499  -0.003  -1.587  O3    ML4   1  
ML4  C2    C2    C  0  1  N  N  N  15.459   5.298  18.371   -9.031   0.221  -0.348  C2    ML4   2  
ML4  O1    O1    O  0  1  N  N  N  15.640   5.449  17.148   -9.787   0.206   0.595  O1    ML4   3  
ML4  C4    C4    C  0  1  N  N  S  14.483   4.254  18.836   -7.564   0.490  -0.134  C4    ML4   4  
ML4  N5    N5    N  0  1  N  N  N  14.673   3.993  20.256   -7.373   1.158   1.160  N5    ML4   5  
ML4  C6    C6    C  0  1  N  N  N  13.067   4.747  18.561   -6.796  -0.832  -0.144  C6    ML4   6  
ML4  C7    C7    C  0  1  Y  N  N  12.022   3.687  18.830   -5.317  -0.555  -0.053  C7    ML4   7  
ML4  C12   C12   C  0  1  Y  N  N  11.842   2.629  17.943   -4.577  -0.376  -1.208  C12   ML4   8  
ML4  C11   C11   C  0  1  Y  N  N  10.871   1.660  18.203   -3.223  -0.122  -1.131  C11   ML4   9  
ML4  C10   C10   C  0  1  Y  N  N  10.071   1.751  19.347   -2.601  -0.045   0.114  C10   ML4  10  
ML4  C9    C9    C  0  1  Y  N  N  10.262   2.806  20.239   -3.352  -0.226   1.275  C9    ML4  11  
ML4  C8    C8    C  0  1  Y  N  N  11.233   3.770  19.981   -4.706  -0.475   1.185  C8    ML4  12  
ML4  C13   C13   C  0  1  Y  N  N   9.041   0.713  19.626   -1.146   0.227   0.204  C13   ML4  13  
ML4  N18   N18   N  0  1  Y  N  N   8.831  -0.313  18.763   -0.433   0.405  -0.905  N18   ML4  14  
ML4  C17   C17   C  0  1  Y  N  N   7.910  -1.253  19.005    0.860   0.647  -0.825  C17   ML4  15  
ML4  C16   C16   C  0  1  Y  N  N   7.154  -1.184  20.167    1.481   0.718   0.421  C16   ML4  16  
ML4  N15   N15   N  0  1  Y  N  N   7.364  -0.165  21.031    0.770   0.541   1.528  N15   ML4  17  
ML4  C14   C14   C  0  1  Y  N  N   8.284   0.778  20.789   -0.526   0.303   1.449  C14   ML4  18  
ML4  N19   N19   N  0  1  N  N  N   6.221  -2.126  20.442    2.844   0.974   0.505  N19   ML4  19  
ML4  C20   C20   C  0  1  N  N  N   5.865  -2.420  21.826    3.629   1.168  -0.717  C20   ML4  20  
ML4  C21   C21   C  0  1  Y  N  N   5.165  -3.761  21.939    5.068   1.428  -0.353  C21   ML4  21  
ML4  C26   C26   C  0  1  Y  N  N   3.738  -3.855  22.381    5.883   0.377   0.065  C26   ML4  22  
ML4  C25   C25   C  0  1  Y  N  N   3.137  -5.111  22.474    7.212   0.624   0.400  C25   ML4  23  
ML4  C24   C24   C  0  1  Y  N  N   3.869  -6.255  22.160    7.716   1.906   0.316  C24   ML4  24  
ML4  C23   C23   C  0  1  Y  N  N   5.199  -6.171  21.743    6.903   2.945  -0.100  C23   ML4  25  
ML4  C22   C22   C  0  1  Y  N  N   5.845  -4.940  21.636    5.584   2.705  -0.439  C22   ML4  26  
ML4  C27   C27   C  0  1  Y  N  N   2.957  -2.634  22.724    5.336  -1.000   0.154  C27   ML4  27  
ML4  C32   C32   C  0  1  Y  N  N   2.309  -1.923  21.717    5.147  -1.598   1.397  C32   ML4  28  
ML4  C31   C31   C  0  1  Y  N  N   1.576  -0.778  22.030    4.638  -2.879   1.474  C31   ML4  29  
ML4  C30   C30   C  0  1  Y  N  N   1.479  -0.329  23.347    4.315  -3.568   0.319  C30   ML4  30  
ML4  C29   C29   C  0  1  Y  N  N   2.111  -1.007  24.392    4.500  -2.978  -0.919  C29   ML4  31  
ML4  C28   C28   C  0  1  Y  N  N   2.856  -2.156  24.135    5.003  -1.696  -1.007  C28   ML4  32  
ML4  C33   C33   C  0  1  N  N  N   3.538  -2.886  25.273    5.199  -1.053  -2.356  C33   ML4  33  
ML4  HO3   HO3   H  0  1  N  N  N  16.642   6.598  18.784  -10.447  -0.171  -1.674  HO3   ML4  34  
ML4  H4    H4    H  0  1  N  N  N  14.650   3.313  18.292   -7.193   1.133  -0.933  H4    ML4  35  
ML4  HN5   HN5   H  0  1  N  N  N  14.717   3.006  20.411   -7.710   0.582   1.917  HN5   ML4  36  
ML4  HN5A  HN5A  H  0  0  N  N  N  15.526   4.416  20.561   -6.405   1.408   1.299  HN5A  ML4  37  
ML4  H6    H6    H  0  1  N  N  N  12.865   5.609  19.214   -7.105  -1.439   0.707  H6    ML4  38  
ML4  H6A   H6A   H  0  1  N  N  N  13.006   5.016  17.496   -7.008  -1.369  -1.069  H6A   ML4  39  
ML4  H12   H12   H  0  1  N  N  N  12.453   2.558  17.055   -5.060  -0.435  -2.172  H12   ML4  40  
ML4  H11   H11   H  0  1  N  N  N  10.737   0.836  17.518   -2.646   0.018  -2.033  H11   ML4  41  
ML4  H9    H9    H  0  1  N  N  N   9.656   2.875  21.130   -2.875  -0.168   2.242  H9    ML4  42  
ML4  H8    H8    H  0  1  N  N  N  11.377   4.586  20.674   -5.289  -0.612   2.084  H8    ML4  43  
ML4  H17   H17   H  0  1  N  N  N   7.756  -2.058  18.302    1.440   0.791  -1.725  H17   ML4  44  
ML4  H14   H14   H  0  1  N  N  N   8.436   1.583  21.493   -1.106   0.164   2.350  H14   ML4  45  
ML4  HN19  HN19  H  0  0  N  N  N   5.379  -1.820  19.998    3.276   1.023   1.372  HN19  ML4  46  
ML4  H20   H20   H  0  1  N  N  N   6.782  -2.445  22.432    3.566   0.273  -1.336  H20   ML4  47  
ML4  H20A  H20A  H  0  0  N  N  N   5.180  -1.637  22.184    3.235   2.021  -1.270  H20A  ML4  48  
ML4  H25   H25   H  0  1  N  N  N   2.107  -5.197  22.788    7.848  -0.187   0.725  H25   ML4  49  
ML4  H24   H24   H  0  1  N  N  N   3.399  -7.224  22.241    8.747   2.099   0.575  H24   ML4  50  
ML4  H23   H23   H  0  1  N  N  N   5.737  -7.075  21.499    7.301   3.947  -0.163  H23   ML4  51  
ML4  H22   H22   H  0  1  N  N  N   6.876  -4.900  21.317    4.955   3.519  -0.767  H22   ML4  52  
ML4  H32   H32   H  0  1  N  N  N   2.374  -2.258  20.692    5.400  -1.062   2.300  H32   ML4  53  
ML4  H31   H31   H  0  1  N  N  N   1.077  -0.232  21.243    4.491  -3.344   2.438  H31   ML4  54  
ML4  H30   H30   H  0  1  N  N  N   0.904   0.560  23.563    3.917  -4.570   0.383  H30   ML4  55  
ML4  H29   H29   H  0  1  N  N  N   2.022  -0.639  25.403    4.246  -3.520  -1.818  H29   ML4  56  
ML4  H33   H33   H  0  1  N  N  N   3.703  -3.936  24.989    6.161  -1.358  -2.768  H33   ML4  57  
ML4  H33A  H33A  H  0  0  N  N  N   4.505  -2.408  25.488    4.400  -1.367  -3.027  H33A  ML4  58  
ML4  H33B  H33B  H  0  0  N  N  N   2.901  -2.845  26.169    5.177   0.032  -2.247  H33B  ML4  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ML4  C2   O3    SING  N  N   1  
ML4  O3   HO3   SING  N  N   2  
ML4  O1   C2    DOUB  N  N   3  
ML4  C2   C4    SING  N  N   4  
ML4  C6   C4    SING  N  N   5  
ML4  C4   N5    SING  N  N   6  
ML4  C4   H4    SING  N  N   7  
ML4  N5   HN5   SING  N  N   8  
ML4  N5   HN5A  SING  N  N   9  
ML4  C6   C7    SING  N  N  10  
ML4  C6   H6    SING  N  N  11  
ML4  C6   H6A   SING  N  N  12  
ML4  C12  C7    DOUB  Y  N  13  
ML4  C7   C8    SING  Y  N  14  
ML4  C12  C11   SING  Y  N  15  
ML4  C12  H12   SING  N  N  16  
ML4  C11  C10   DOUB  Y  N  17  
ML4  C11  H11   SING  N  N  18  
ML4  C10  C13   SING  Y  N  19  
ML4  C10  C9    SING  Y  N  20  
ML4  C8   C9    DOUB  Y  N  21  
ML4  C9   H9    SING  N  N  22  
ML4  C8   H8    SING  N  N  23  
ML4  N18  C13   DOUB  Y  N  24  
ML4  C13  C14   SING  Y  N  25  
ML4  N18  C17   SING  Y  N  26  
ML4  C17  C16   DOUB  Y  N  27  
ML4  C17  H17   SING  N  N  28  
ML4  C16  N19   SING  N  N  29  
ML4  C16  N15   SING  Y  N  30  
ML4  C14  N15   DOUB  Y  N  31  
ML4  C14  H14   SING  N  N  32  
ML4  N19  C20   SING  N  N  33  
ML4  N19  HN19  SING  N  N  34  
ML4  C20  C21   SING  N  N  35  
ML4  C20  H20   SING  N  N  36  
ML4  C20  H20A  SING  N  N  37  
ML4  C22  C21   DOUB  Y  N  38  
ML4  C21  C26   SING  Y  N  39  
ML4  C26  C25   DOUB  Y  N  40  
ML4  C26  C27   SING  Y  N  41  
ML4  C24  C25   SING  Y  N  42  
ML4  C25  H25   SING  N  N  43  
ML4  C23  C24   DOUB  Y  N  44  
ML4  C24  H24   SING  N  N  45  
ML4  C22  C23   SING  Y  N  46  
ML4  C23  H23   SING  N  N  47  
ML4  C22  H22   SING  N  N  48  
ML4  C32  C27   DOUB  Y  N  49  
ML4  C27  C28   SING  Y  N  50  
ML4  C32  C31   SING  Y  N  51  
ML4  C32  H32   SING  N  N  52  
ML4  C31  C30   DOUB  Y  N  53  
ML4  C31  H31   SING  N  N  54  
ML4  C30  C29   SING  Y  N  55  
ML4  C30  H30   SING  N  N  56  
ML4  C28  C29   DOUB  Y  N  57  
ML4  C29  H29   SING  N  N  58  
ML4  C28  C33   SING  N  N  59  
ML4  C33  H33   SING  N  N  60  
ML4  C33  H33A  SING  N  N  61  
ML4  C33  H33B  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ML4  SMILES            ACDLabs               10.04  "O=C(O)C(N)Cc4ccc(c1ncc(nc1)NCc2ccccc2c3ccccc3C)cc4"  
ML4  SMILES_CANONICAL  CACTVS                3.341  "Cc1ccccc1c2ccccc2CNc3cnc(cn3)c4ccc(C[C@H](N)C(O)=O)cc4"  
ML4  SMILES            CACTVS                3.341  "Cc1ccccc1c2ccccc2CNc3cnc(cn3)c4ccc(C[CH](N)C(O)=O)cc4"  
ML4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1ccccc1c2ccccc2CNc3cnc(cn3)c4ccc(cc4)C[C@@H](C(=O)O)N"  
ML4  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1ccccc1c2ccccc2CNc3cnc(cn3)c4ccc(cc4)CC(C(=O)O)N"  
ML4  InChI             InChI                 1.03   "InChI=1S/C27H26N4O2/c1-18-6-2-4-8-22(18)23-9-5-3-7-21(23)15-30-26-17-29-25(16-31-26)20-12-10-19(11-13-20)14-24(28)27(32)33/h2-13,16-17,24H,14-15,28H2,1H3,(H,30,31)(H,32,33)/t24-/m0/s1"  
ML4  InChIKey          InChI                 1.03   LQRILFQFPLOLRC-DEOSSOPVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ML4  "SYSTEMATIC NAME"  ACDLabs               10.04  "4-(5-{[(2'-methylbiphenyl-2-yl)methyl]amino}pyrazin-2-yl)-L-phenylalanine"  
ML4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-amino-3-[4-[5-[[2-(2-methylphenyl)phenyl]methylamino]pyrazin-2-yl]phenyl]propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ML4  "Create component"      2009-05-31  RCSB  
ML4  "Modify aromatic_flag"  2011-06-04  RCSB  
ML4  "Modify descriptor"     2011-06-04  RCSB  
ML4  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     ML4
_pdbx_chem_comp_synonyms.name        "(S)-2-Amino-3-(4-{5-[(2'-methyl-biphenyl-2-ylmethyl)-amino]-pyrazin-2-yl}-phenyl)-propionic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
