data_PB4
#

_chem_comp.id                                   PB4
_chem_comp.name                                 "N,N'-BIS(4-FLUORO-3-METHYLBENZYL)PYRIMIDINE-4,6-DICARBOXAMIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H20 F2 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PYRIMIDINE-4,6-DICARBOXYLIC ACID BIS-(4-FLUORO-3-METHYL-BENZYLAMIDE)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-10-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       410.417
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PB4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1XUD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PB4  C1    C1    C  0  1  Y  N  N  -11.603  27.335  44.851   0.798   0.007  -1.197  C1    PB4   1  
PB4  C2    C2    C  0  1  Y  N  N  -11.040  27.942  45.966   1.500  -0.146   0.000  C2    PB4   2  
PB4  C3    C3    C  0  1  Y  N  N   -9.658  27.993  46.058   0.799   0.007   1.198  C3    PB4   3  
PB4  C7    C7    C  0  1  N  N  N   -5.802  27.967  53.452  -1.878  -1.970   8.159  C7    PB4   4  
PB4  C8    C8    C  0  1  N  N  N  -18.288  22.176  44.244  -1.876  -1.971  -8.159  C8    PB4   5  
PB4  C9    C9    C  0  1  N  N  N   -9.054  28.610  47.228   1.492  -0.144   2.502  C9    PB4   6  
PB4  C10   C10   C  0  1  N  N  N   -6.923  28.823  48.544   1.489  -0.144   4.939  C10   PB4   7  
PB4  C11   C11   C  0  1  Y  N  N   -7.083  28.004  49.813   0.504   0.071   6.059  C11   PB4   8  
PB4  C12   C12   C  0  1  N  N  N  -13.065  27.263  44.746   1.491  -0.144  -2.501  C12   PB4   9  
PB4  C13   C13   C  0  1  N  N  N  -15.012  26.067  43.631   1.488  -0.143  -4.938  C13   PB4  10  
PB4  C14   C14   C  0  1  Y  N  N  -15.603  24.956  44.508   0.502   0.072  -6.058  C14   PB4  11  
PB4  C15   C15   C  0  1  Y  N  N  -16.631  24.114  43.985  -0.199  -0.999  -6.575  C15   PB4  12  
PB4  C16   C16   C  0  1  Y  N  N  -16.728  22.856  46.166  -1.304   0.467  -8.114  C16   PB4  13  
PB4  C19   C19   C  0  1  Y  N  N   -7.948  26.840  49.844   0.309   1.340   6.572  C19   PB4  14  
PB4  C20   C20   C  0  1  Y  N  N   -8.119  26.059  51.011  -0.593   1.539   7.599  C20   PB4  15  
PB4  C21   C21   C  0  1  Y  N  N   -7.418  26.427  52.188  -1.306   0.467   8.111  C21   PB4  16  
PB4  C22   C22   C  0  1  Y  N  N   -6.382  28.368  51.003  -0.202  -0.999   6.572  C22   PB4  17  
PB4  N1    N1    N  0  1  Y  N  N   -8.830  27.444  45.047  -0.499   0.286   1.152  N1    PB4  18  
PB4  C5    C5    C  0  1  Y  N  N   -9.389  26.832  43.919  -1.121   0.427   0.000  C5    PB4  19  
PB4  N2    N2    N  0  1  Y  N  N  -10.781  26.785  43.839  -0.499   0.291  -1.151  N2    PB4  20  
PB4  N3    N3    N  0  1  N  N  N   -7.715  28.315  47.385   0.805   0.005   3.652  N3    PB4  21  
PB4  N4    N4    N  0  1  N  N  N  -13.562  26.303  43.858   0.804   0.006  -3.651  N4    PB4  22  
PB4  C6    C6    C  0  1  Y  N  N  -17.185  23.073  44.815  -1.107  -0.802  -7.599  C6    PB4  23  
PB4  C17   C17   C  0  1  Y  N  N  -15.701  23.689  46.697  -0.596   1.539  -7.598  C17   PB4  24  
PB4  C18   C18   C  0  1  Y  N  N  -15.149  24.724  45.873   0.306   1.341  -6.571  C18   PB4  25  
PB4  C4    C4    C  0  1  Y  N  N   -6.556  27.575  52.177  -1.106  -0.802   7.599  C4    PB4  26  
PB4  O1    O1    O  0  1  N  N  N  -13.883  27.952  45.382   2.678  -0.403  -2.532  O1    PB4  27  
PB4  O2    O2    O  0  1  N  N  N   -9.610  29.315  48.077   2.678  -0.404   2.533  O2    PB4  28  
PB4  F1    F1    F  0  1  N  N  N   -7.588  25.598  53.442  -2.189   0.661   9.115  F1    PB4  29  
PB4  F2    F2    F  0  1  N  N  N  -17.291  21.819  46.972  -2.187   0.660  -9.118  F2    PB4  30  
PB4  H2    H2    H  0  1  N  N  N  -11.675  28.373  46.759   2.555  -0.376   0.000  H2    PB4  31  
PB4  H71   1H7   H  0  1  N  N  N   -5.216  27.086  53.803  -1.318  -2.415   8.981  H71   PB4  32  
PB4  H72   2H7   H  0  1  N  N  N   -5.132  28.859  53.444  -2.845  -1.625   8.523  H72   PB4  33  
PB4  H73   3H7   H  0  1  N  N  N   -6.540  28.085  54.279  -2.028  -2.714   7.376  H73   PB4  34  
PB4  H81   1H8   H  0  1  N  N  N  -17.925  21.722  43.293  -1.316  -2.415  -8.982  H81   PB4  35  
PB4  H82   2H8   H  0  1  N  N  N  -18.716  21.371  44.886  -2.026  -2.715  -7.378  H82   PB4  36  
PB4  H83   3H8   H  0  1  N  N  N  -19.119  22.821  43.874  -2.844  -1.627  -8.524  H83   PB4  37  
PB4  H101  1H10  H  0  0  N  N  N   -5.846  28.914  48.271   2.290   0.591   5.012  H101  PB4  38  
PB4  H102  2H10  H  0  0  N  N  N   -7.160  29.895  48.739   1.909  -1.147   5.012  H102  PB4  39  
PB4  H131  1H13  H  0  0  N  N  N  -15.588  27.014  43.755   1.908  -1.145  -5.012  H131  PB4  40  
PB4  H132  2H13  H  0  0  N  N  N  -15.213  25.865  42.553   2.288   0.593  -5.012  H132  PB4  41  
PB4  H15   H15   H  0  1  N  N  N  -16.992  24.266  42.954  -0.045  -1.990  -6.174  H15   PB4  42  
PB4  H19   H19   H  0  1  N  N  N   -8.501  26.535  48.939   0.862   2.176   6.171  H19   PB4  43  
PB4  H20   H20   H  0  1  N  N  N   -8.786  25.180  51.003  -0.745   2.530   8.000  H20   PB4  44  
PB4  H22   H22   H  0  1  N  N  N   -5.717  29.248  51.015  -0.049  -1.990   6.171  H22   PB4  45  
PB4  H5    H5    H  0  1  N  N  N   -8.757  26.403  43.124  -2.176   0.658   0.001  H5    PB4  46  
PB4  HN3   HN3   H  0  1  N  N  N   -7.315  27.728  46.653  -0.141   0.213   3.627  HN3   PB4  47  
PB4  HN4   HN4   H  0  1  N  N  N  -12.851  25.763  43.365  -0.143   0.213  -3.626  HN4   PB4  48  
PB4  H17   H17   H  0  1  N  N  N  -15.340  23.535  47.728  -0.749   2.530  -7.998  H17   PB4  49  
PB4  H18   H18   H  0  1  N  N  N  -14.354  25.358  46.300   0.859   2.177  -6.169  H18   PB4  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PB4  C1   C2    SING  Y  N   1  
PB4  C1   C12   SING  N  N   2  
PB4  C1   N2    DOUB  Y  N   3  
PB4  C2   C3    DOUB  Y  N   4  
PB4  C2   H2    SING  N  N   5  
PB4  C3   C9    SING  N  N   6  
PB4  C3   N1    SING  Y  N   7  
PB4  C7   C4    SING  N  N   8  
PB4  C7   H71   SING  N  N   9  
PB4  C7   H72   SING  N  N  10  
PB4  C7   H73   SING  N  N  11  
PB4  C8   C6    SING  N  N  12  
PB4  C8   H81   SING  N  N  13  
PB4  C8   H82   SING  N  N  14  
PB4  C8   H83   SING  N  N  15  
PB4  C9   N3    SING  N  N  16  
PB4  C9   O2    DOUB  N  N  17  
PB4  C10  C11   SING  N  N  18  
PB4  C10  N3    SING  N  N  19  
PB4  C10  H101  SING  N  N  20  
PB4  C10  H102  SING  N  N  21  
PB4  C11  C19   SING  Y  N  22  
PB4  C11  C22   DOUB  Y  N  23  
PB4  C12  N4    SING  N  N  24  
PB4  C12  O1    DOUB  N  N  25  
PB4  C13  C14   SING  N  N  26  
PB4  C13  N4    SING  N  N  27  
PB4  C13  H131  SING  N  N  28  
PB4  C13  H132  SING  N  N  29  
PB4  C14  C15   DOUB  Y  N  30  
PB4  C14  C18   SING  Y  N  31  
PB4  C15  C6    SING  Y  N  32  
PB4  C15  H15   SING  N  N  33  
PB4  C16  C6    DOUB  Y  N  34  
PB4  C16  C17   SING  Y  N  35  
PB4  C16  F2    SING  N  N  36  
PB4  C19  C20   DOUB  Y  N  37  
PB4  C19  H19   SING  N  N  38  
PB4  C20  C21   SING  Y  N  39  
PB4  C20  H20   SING  N  N  40  
PB4  C21  C4    DOUB  Y  N  41  
PB4  C21  F1    SING  N  N  42  
PB4  C22  C4    SING  Y  N  43  
PB4  C22  H22   SING  N  N  44  
PB4  N1   C5    DOUB  Y  N  45  
PB4  C5   N2    SING  Y  N  46  
PB4  C5   H5    SING  N  N  47  
PB4  N3   HN3   SING  N  N  48  
PB4  N4   HN4   SING  N  N  49  
PB4  C17  C18   DOUB  Y  N  50  
PB4  C17  H17   SING  N  N  51  
PB4  C18  H18   SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PB4  SMILES            ACDLabs               10.04  "O=C(c2ncnc(C(=O)NCc1ccc(F)c(c1)C)c2)NCc3ccc(F)c(c3)C"  
PB4  SMILES_CANONICAL  CACTVS                3.341  "Cc1cc(CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(F)c(C)c3)ccc1F"  
PB4  SMILES            CACTVS                3.341  "Cc1cc(CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(F)c(C)c3)ccc1F"  
PB4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1cc(ccc1F)CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(c(c3)C)F"  
PB4  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1cc(ccc1F)CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(c(c3)C)F"  
PB4  InChI             InChI                 1.03   "InChI=1S/C22H20F2N4O2/c1-13-7-15(3-5-17(13)23)10-25-21(29)19-9-20(28-12-27-19)22(30)26-11-16-4-6-18(24)14(2)8-16/h3-9,12H,10-11H2,1-2H3,(H,25,29)(H,26,30)"  
PB4  InChIKey          InChI                 1.03   PYFRREJCFXFNRR-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PB4  "SYSTEMATIC NAME"  ACDLabs               10.04  "N,N'-bis(4-fluoro-3-methylbenzyl)pyrimidine-4,6-dicarboxamide"  
PB4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N,N'-bis[(4-fluoro-3-methyl-phenyl)methyl]pyrimidine-4,6-dicarboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PB4  "Create component"   2004-10-28  RCSB  
PB4  "Modify descriptor"  2011-06-04  RCSB  
PB4  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PB4
_pdbx_chem_comp_synonyms.name        "PYRIMIDINE-4,6-DICARBOXYLIC ACID BIS-(4-FLUORO-3-METHYL-BENZYLAMIDE)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
