data_RA4
#

_chem_comp.id                                   RA4
_chem_comp.name                                 "N-(4-NITROBENZOYL)-L-LEUCYL-N-(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)-L-PROLINAMIDE"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H35 N7 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1-GUANIDINO-4-(N-NITRO-BENZOYLAMINO-L-LEUCYL-L-PROLYLAMINO)BUTANE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-02-03
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       489.568
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RA4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1YPM
_chem_comp.pdbx_subcomponent_list               "4NB LEU PRO AG2"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RA4  C26   C26   C   0  1  N  N  N  18.868  -16.772  24.152    4.233   0.957   0.073  C       4NB   1  
RA4  O25   O25   O   0  1  N  N  N  19.550  -17.157  25.096    4.697   2.079   0.123  O2      4NB   2  
RA4  C27   C27   C   0  1  Y  N  N  17.464  -17.318  24.074    5.125  -0.217   0.178  C1      4NB   3  
RA4  C28   C28   C   0  1  Y  N  N  17.002  -18.044  25.179    6.501  -0.041   0.333  C2      4NB   4  
RA4  C29   C29   C   0  1  Y  N  N  15.851  -18.825  25.081    7.327  -1.141   0.430  C3      4NB   5  
RA4  C30   C30   C   0  1  Y  N  N  15.137  -18.896  23.881    6.796  -2.417   0.373  C4      4NB   6  
RA4  C34   C34   C   0  1  Y  N  N  15.602  -18.169  22.783    5.433  -2.599   0.219  C5      4NB   7  
RA4  C35   C35   C   0  1  Y  N  N  16.761  -17.389  22.873    4.594  -1.507   0.126  C6      4NB   8  
RA4  N31   N31   N   1  1  N  N  N  14.024  -19.664  23.814    7.689  -3.593   0.477  N       4NB   9  
RA4  O32   O32   O  -1  1  N  N  N  13.592  -20.376  24.946    8.889  -3.436   0.612  "O1'"   4NB  10  
RA4  O33   O33   O   0  1  N  N  N  13.379  -19.757  22.795    7.223  -4.717   0.426  "O2'"   4NB  11  
RA4  N24   N24   N   0  1  N  N  N  19.295  -15.861  23.269    2.905   0.784  -0.077  N       LEU  12  
RA4  C23   C23   C   0  1  N  N  S  19.263  -14.448  23.538    2.010   1.943  -0.078  CA      LEU  13  
RA4  C18   C18   C   0  1  N  N  N  18.645  -13.608  22.443    0.644   1.524   0.402  C       LEU  14  
RA4  O17   O17   O   0  1  N  N  N  17.598  -13.077  22.829    0.351   0.348   0.444  O       LEU  15  
RA4  C22   C22   C   0  1  N  N  N  20.596  -13.886  24.018    1.902   2.504  -1.497  CB      LEU  16  
RA4  C21   C21   C   0  1  N  N  N  20.781  -13.907  25.532    1.697   1.354  -2.486  CG      LEU  17  
RA4  C19   C19   C   0  1  N  N  N  21.335  -12.570  26.056    2.096   1.811  -3.890  CD1     LEU  18  
RA4  C20   C20   C   0  1  N  N  N  19.491  -14.310  26.258    0.225   0.936  -2.484  CD2     LEU  19  
RA4  N16   N16   N   0  1  N  N  N  19.303  -13.046  21.395   -0.252   2.456   0.783  N       PRO  20  
RA4  C12   C12   C   0  1  N  N  S  18.872  -11.802  20.775   -1.560   2.186   1.396  CA      PRO  21  
RA4  C11   C11   C   0  1  N  N  N  17.436  -11.857  20.319   -2.418   1.392   0.445  C       PRO  22  
RA4  O10   O10   O   0  1  N  N  N  17.064  -12.804  19.632   -2.034   1.183  -0.686  O       PRO  23  
RA4  C13   C13   C   0  1  N  N  N  19.759  -11.719  19.511   -2.220   3.551   1.687  CB      PRO  24  
RA4  C14   C14   C   0  1  N  N  N  20.940  -12.685  19.768   -1.010   4.521   1.733  CG      PRO  25  
RA4  C15   C15   C   0  1  N  N  N  20.379  -13.761  20.735   -0.084   3.915   0.650  CD      PRO  26  
RA4  N9    N9    N   0  1  N  N  N  16.793  -10.758  20.415   -3.611   0.914   0.852  N       AG2  27  
RA4  C8    C8    C   0  1  N  N  N  15.432  -10.908  19.933   -4.444   0.142  -0.073  CA      AG2  28  
RA4  C7    C7    C   0  1  N  N  N  14.556   -9.949  20.768   -5.735  -0.278   0.633  CB      AG2  29  
RA4  C6    C6    C   0  1  N  N  N  13.293  -10.693  21.213   -6.606  -1.084  -0.333  CG      AG2  30  
RA4  C5    C5    C   0  1  N  N  N  12.584   -9.902  22.342   -7.896  -1.504   0.374  CD      AG2  31  
RA4  N4    N4    N   0  1  N  N  N  11.998  -10.916  23.174   -8.730  -2.276  -0.551  NE      AG2  32  
RA4  C2    C2    C   0  1  N  N  N  11.172  -10.577  24.064   -9.947  -2.763  -0.136  CZ      AG2  33  
RA4  N1    N1    N   0  1  N  N  N  10.885   -9.391  24.419  -10.359  -2.538   1.079  NH1     AG2  34  
RA4  N3    N3    N   0  1  N  N  N  10.586  -11.562  24.648  -10.729  -3.488  -1.004  NH2     AG2  35  
RA4  H28   H28   H   0  1  N  N  N  17.541  -17.999  26.114    6.917   0.955   0.378  H2      4NB  36  
RA4  H29   H29   H   0  1  N  N  N  15.507  -19.381  25.941    8.392  -1.006   0.551  H3      4NB  37  
RA4  H34   H34   H   0  1  N  N  N  15.059  -18.209  21.850    5.024  -3.598   0.175  H5      4NB  38  
RA4  H35   H35   H   0  1  N  N  N  17.111  -16.841  22.010    3.530  -1.650   0.011  H6      4NB  39  
RA4  H24   H24   H   0  1  N  N  N  19.650  -16.175  22.388    2.542  -0.109  -0.185  H       LEU  40  
RA4  H23   H23   H   0  1  N  N  N  18.568  -14.366  24.387    2.408   2.710   0.586  HA      LEU  41  
RA4  H221  H221  H   0  0  N  N  N  21.398  -14.493  23.572    1.055   3.188  -1.555  HB2     LEU  42  
RA4  H222  H222  H   0  0  N  N  N  20.660  -12.840  23.685    2.819   3.038  -1.747  HB3     LEU  43  
RA4  H21   H21   H   0  1  N  N  N  21.532  -14.680  25.755    2.315   0.506  -2.190  HG      LEU  44  
RA4  H191  H191  H   0  0  N  N  N  21.454  -12.625  27.148    3.144   2.108  -3.891  HD11    LEU  45  
RA4  H192  H192  H   0  0  N  N  N  22.311  -12.370  25.590    1.949   0.992  -4.594  HD12    LEU  46  
RA4  H193  H193  H   0  0  N  N  N  20.636  -11.759  25.804    1.477   2.659  -4.186  HD13    LEU  47  
RA4  H201  H201  H   0  0  N  N  N  19.666  -14.313  27.344    0.056   0.197  -3.266  HD21    LEU  48  
RA4  H202  H202  H   0  0  N  N  N  18.695  -13.590  26.017   -0.029   0.505  -1.515  HD22    LEU  49  
RA4  H203  H203  H   0  0  N  N  N  19.187  -15.316  25.933   -0.400   1.810  -2.668  HD23    LEU  50  
RA4  H12   H12   H   0  1  N  N  N  18.955  -10.957  21.475   -1.427   1.635   2.327  HA      PRO  51  
RA4  H131  H131  H   0  0  N  N  N  20.121  -10.692  19.355   -2.738   3.535   2.646  HB2     PRO  52  
RA4  H132  H132  H   0  0  N  N  N  19.194  -12.022  18.617   -2.903   3.824   0.883  HB3     PRO  53  
RA4  H141  H141  H   0  0  N  N  N  21.791  -12.155  20.221   -0.531   4.503   2.712  HG2     PRO  54  
RA4  H142  H142  H   0  0  N  N  N  21.286  -13.142  18.829   -1.311   5.534   1.467  HG3     PRO  55  
RA4  H151  H151  H   0  0  N  N  N  21.140  -14.111  21.448    0.953   4.196   0.836  HD2     PRO  56  
RA4  H152  H152  H   0  0  N  N  N  20.015  -14.649  20.197   -0.394   4.243  -0.342  HD3     PRO  57  
RA4  HN9   HN9   H   0  1  N  N  N  17.176   -9.907  20.774   -3.918   1.082   1.757  HN1     AG2  58  
RA4  H81   H81   H   0  1  N  N  N  15.373  -10.650  18.865   -4.688   0.755  -0.941  HA1     AG2  59  
RA4  H82   H82   H   0  1  N  N  N  15.092  -11.946  20.061   -3.902  -0.746  -0.396  HA2     AG2  60  
RA4  H71   H71   H   0  1  N  N  N  15.117   -9.610  21.651   -5.491  -0.891   1.501  HB1     AG2  61  
RA4  H72   H72   H   0  1  N  N  N  14.277   -9.077  20.158   -6.278   0.610   0.956  HB2     AG2  62  
RA4  H61   H61   H   0  1  N  N  N  12.610  -10.796  20.357   -6.849  -0.471  -1.200  HG1     AG2  63  
RA4  H62   H62   H   0  1  N  N  N  13.570  -11.690  21.586   -6.063  -1.972  -0.656  HG2     AG2  64  
RA4  H51   H51   H   0  1  N  N  N  13.300   -9.288  22.908   -7.653  -2.117   1.241  HD1     AG2  65  
RA4  H52   H52   H   0  1  N  N  N  11.816   -9.229  21.934   -8.439  -0.616   0.697  HD2     AG2  66  
RA4  HN4   HN4   H   0  1  N  N  N  12.242  -11.878  23.049   -8.423  -2.444  -1.456  HE1     AG2  67  
RA4  HN1   HN1   H   0  1  N  N  N  10.201   -9.373  25.149  -11.217  -2.882   1.372  HH11    AG2  68  
RA4  HN31  HN31  H   0  0  N  N  N   9.916  -11.388  25.370  -10.422  -3.656  -1.909  HH21    AG2  69  
RA4  HN32  HN32  H   0  0  N  N  N  10.801  -12.501  24.380  -11.588  -3.832  -0.712  HH22    AG2  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RA4  C27  C26   SING  N  N   1  
RA4  C27  C28   DOUB  Y  N   2  
RA4  C27  C35   SING  Y  N   3  
RA4  C26  O25   DOUB  N  N   4  
RA4  C26  N24   SING  N  N   5  
RA4  N24  C23   SING  N  N   6  
RA4  N24  H24   SING  N  N   7  
RA4  C23  C22   SING  N  N   8  
RA4  C23  C18   SING  N  N   9  
RA4  C23  H23   SING  N  N  10  
RA4  C22  C21   SING  N  N  11  
RA4  C22  H221  SING  N  N  12  
RA4  C22  H222  SING  N  N  13  
RA4  C21  C20   SING  N  N  14  
RA4  C21  C19   SING  N  N  15  
RA4  C21  H21   SING  N  N  16  
RA4  C20  H201  SING  N  N  17  
RA4  C20  H202  SING  N  N  18  
RA4  C20  H203  SING  N  N  19  
RA4  C19  H191  SING  N  N  20  
RA4  C19  H192  SING  N  N  21  
RA4  C19  H193  SING  N  N  22  
RA4  C18  O17   DOUB  N  N  23  
RA4  C18  N16   SING  N  N  24  
RA4  N16  C15   SING  N  N  25  
RA4  N16  C12   SING  N  N  26  
RA4  C15  C14   SING  N  N  27  
RA4  C15  H151  SING  N  N  28  
RA4  C15  H152  SING  N  N  29  
RA4  C14  C13   SING  N  N  30  
RA4  C14  H141  SING  N  N  31  
RA4  C14  H142  SING  N  N  32  
RA4  C13  C12   SING  N  N  33  
RA4  C13  H131  SING  N  N  34  
RA4  C13  H132  SING  N  N  35  
RA4  C12  C11   SING  N  N  36  
RA4  C12  H12   SING  N  N  37  
RA4  C11  O10   DOUB  N  N  38  
RA4  C11  N9    SING  N  N  39  
RA4  N9   C8    SING  N  N  40  
RA4  N9   HN9   SING  N  N  41  
RA4  C8   C7    SING  N  N  42  
RA4  C8   H81   SING  N  N  43  
RA4  C8   H82   SING  N  N  44  
RA4  C7   C6    SING  N  N  45  
RA4  C7   H71   SING  N  N  46  
RA4  C7   H72   SING  N  N  47  
RA4  C6   C5    SING  N  N  48  
RA4  C6   H61   SING  N  N  49  
RA4  C6   H62   SING  N  N  50  
RA4  C5   N4    SING  N  N  51  
RA4  C5   H51   SING  N  N  52  
RA4  C5   H52   SING  N  N  53  
RA4  N4   C2    SING  N  N  54  
RA4  N4   HN4   SING  N  N  55  
RA4  C2   N1    DOUB  N  N  56  
RA4  C2   N3    SING  N  N  57  
RA4  N1   HN1   SING  N  N  58  
RA4  N3   HN31  SING  N  N  59  
RA4  N3   HN32  SING  N  N  60  
RA4  C28  C29   SING  Y  N  61  
RA4  C28  H28   SING  N  N  62  
RA4  C29  C30   DOUB  Y  N  63  
RA4  C29  H29   SING  N  N  64  
RA4  C30  N31   SING  N  N  65  
RA4  C30  C34   SING  Y  N  66  
RA4  N31  O32   SING  N  N  67  
RA4  N31  O33   DOUB  N  N  68  
RA4  C34  C35   DOUB  Y  N  69  
RA4  C34  H34   SING  N  N  70  
RA4  C35  H35   SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RA4  SMILES            ACDLabs               12.01  "O=C(NCCCCNC(=[N@H])N)C2N(C(=O)C(NC(=O)c1ccc([N+]([O-])=O)cc1)CC(C)C)CCC2"  
RA4  InChI             InChI                 1.03   "InChI=1S/C23H35N7O5/c1-15(2)14-18(28-20(31)16-7-9-17(10-8-16)30(34)35)22(33)29-13-5-6-19(29)21(32)26-11-3-4-12-27-23(24)25/h7-10,15,18-19H,3-6,11-14H2,1-2H3,(H,26,32)(H,28,31)(H4,24,25,27)/t18-,19-/m0/s1"  
RA4  InChIKey          InChI                 1.03   FIZYZWLGMGGGBJ-OALUTQOASA-N  
RA4  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(=O)N2CCC[C@H]2C(=O)NCCCCNC(N)=N"  
RA4  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(=O)N2CCC[CH]2C(=O)NCCCCNC(N)=N"  
RA4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "[H]/N=C(\N)/NCCCCNC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)c2ccc(cc2)[N+](=O)[O-]"  
RA4  SMILES            "OpenEye OEToolkits"  1.7.5  "CC(C)CC(C(=O)N1CCCC1C(=O)NCCCCNC(=N)N)NC(=O)c2ccc(cc2)[N+](=O)[O-]"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RA4  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(4-nitrobenzoyl)-L-leucyl-N-(4-carbamimidamidobutyl)-L-prolinamide"  
RA4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2S)-N-(4-carbamimidamidobutyl)-1-[(2S)-4-methyl-2-[(4-nitrophenyl)carbonylamino]pentanoyl]pyrrolidine-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RA4  "Create component"          2005-02-03  RCSB  
RA4  "Modify subcomponent list"  2011-02-24  RCSB  
RA4  "Modify descriptor"         2011-06-04  RCSB  
RA4  "Modify descriptor"         2012-01-05  RCSB  
RA4  "Modify synonyms"           2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RA4
_pdbx_chem_comp_synonyms.name        "1-GUANIDINO-4-(N-NITRO-BENZOYLAMINO-L-LEUCYL-L-PROLYLAMINO)BUTANE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
