data_WD4
# 
_chem_comp.id                                    WD4 
_chem_comp.name                                  1-cyclopropylimidazolidin-2-one 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H10 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        126.156 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WD4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FP0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WD4 N1  N1  N 0 1 N N N 38.103 13.497 44.146 1.864  0.812  0.119  N1  WD4 1  
WD4 C1  C1  C 0 1 N N N 34.141 11.229 43.974 -2.318 -0.437 0.832  C1  WD4 2  
WD4 C5  C2  C 0 1 N N N 36.801 13.946 44.245 0.532  0.752  -0.009 C5  WD4 3  
WD4 C4  C3  C 0 1 N N N 38.038 12.120 43.699 2.415  -0.551 0.077  C4  WD4 4  
WD4 C3  C4  C 0 1 N N N 36.855 11.625 44.550 1.173  -1.446 -0.100 C3  WD4 5  
WD4 C2  C5  C 0 1 N N N 34.701 12.630 44.083 -1.359 -0.848 -0.288 C2  WD4 6  
WD4 O   O1  O 0 1 N N N 36.437 15.078 44.012 -0.178 1.738  -0.012 O   WD4 7  
WD4 N   N2  N 0 1 N N N 36.001 12.829 44.628 0.054  -0.493 -0.133 N   WD4 8  
WD4 C   C6  C 0 1 N N N 33.536 12.196 44.955 -2.354 0.293  -0.513 C   WD4 9  
WD4 H1  H1  H 0 1 N N N 38.931 14.021 44.345 2.383  1.625  0.220  H1  WD4 10 
WD4 H2  H2  H 0 1 N N N 33.577 10.932 43.078 -3.143 -1.111 1.061  H2  WD4 11 
WD4 H3  H3  H 0 1 N N N 34.728 10.373 44.338 -1.897 0.098  1.683  H3  WD4 12 
WD4 H4  H4  H 0 1 N N N 37.825 12.049 42.622 3.092  -0.664 -0.770 H4  WD4 13 
WD4 H5  H5  H 0 1 N N N 38.964 11.572 43.927 2.926  -0.786 1.010  H5  WD4 14 
WD4 H6  H6  H 0 1 N N N 36.329 10.794 44.057 1.233  -2.004 -1.035 H6  WD4 15 
WD4 H7  H7  H 0 1 N N N 37.188 11.307 45.549 1.067  -2.126 0.745  H7  WD4 16 
WD4 H8  H8  H 0 1 N N N 34.420 13.296 43.254 -1.554 -1.793 -0.795 H8  WD4 17 
WD4 H9  H9  H 0 1 N N N 32.531 12.606 44.774 -3.203 0.098  -1.168 H9  WD4 18 
WD4 H10 H10 H 0 1 N N N 33.683 12.048 46.035 -1.957 1.307  -0.546 H10 WD4 19 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WD4 C4 N1  SING N N 1  
WD4 C4 C3  SING N N 2  
WD4 C1 C2  SING N N 3  
WD4 C1 C   SING N N 4  
WD4 O  C5  DOUB N N 5  
WD4 C2 N   SING N N 6  
WD4 C2 C   SING N N 7  
WD4 N1 C5  SING N N 8  
WD4 C5 N   SING N N 9  
WD4 C3 N   SING N N 10 
WD4 N1 H1  SING N N 11 
WD4 C1 H2  SING N N 12 
WD4 C1 H3  SING N N 13 
WD4 C4 H4  SING N N 14 
WD4 C4 H5  SING N N 15 
WD4 C3 H6  SING N N 16 
WD4 C3 H7  SING N N 17 
WD4 C2 H8  SING N N 18 
WD4 C  H9  SING N N 19 
WD4 C  H10 SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WD4 SMILES           ACDLabs              12.01 O=C1NCCN1C1CC1                                               
WD4 InChI            InChI                1.06  "InChI=1S/C6H10N2O/c9-6-7-3-4-8(6)5-1-2-5/h5H,1-4H2,(H,7,9)" 
WD4 InChIKey         InChI                1.06  GWIBJFQSKXTOLP-UHFFFAOYSA-N                                  
WD4 SMILES_CANONICAL CACTVS               3.385 O=C1NCCN1C2CC2                                               
WD4 SMILES           CACTVS               3.385 O=C1NCCN1C2CC2                                               
WD4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C1CC1N2CCNC2=O                                               
WD4 SMILES           "OpenEye OEToolkits" 2.0.7 C1CC1N2CCNC2=O                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WD4 "SYSTEMATIC NAME" ACDLabs              12.01 1-cyclopropylimidazolidin-2-one 
WD4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-cyclopropylimidazolidin-2-one 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WD4 "Create component" 2022-09-02 RCSB 
WD4 "Initial release"  2022-11-02 RCSB 
# 
