data_YN4
# 
_chem_comp.id                                    YN4 
_chem_comp.name                                  "ETHYL 4-[(2-CYANOETHYL)SULFANYL]-6-{[6-(PIPERAZIN-1-YL)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H27 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-06 
_chem_comp.pdbx_modified_date                    2017-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        477.579 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YN4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5G21 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YN4 N    N    N 0 1 N N N 2.385  50.641 62.119 -4.856  -4.219 2.558  N    YN4 1  
YN4 C7   C7   C 0 1 N N N 2.704  51.653 61.725 -4.797  -3.501 1.679  C7   YN4 2  
YN4 C6   C6   C 0 1 N N N 3.146  52.911 61.219 -4.722  -2.572 0.540  C6   YN4 3  
YN4 C5   C5   C 0 1 N N N 4.552  52.422 60.899 -3.264  -2.426 0.097  C5   YN4 4  
YN4 S    S    S 0 1 N N N 5.519  52.752 62.359 -3.171  -1.284 -1.304 S    YN4 5  
YN4 C4   C4   C 0 1 Y N N 5.028  51.800 63.739 -3.408  0.248  -0.465 C4   YN4 6  
YN4 C8   C8   C 0 1 Y N N 5.361  50.384 63.649 -2.307  0.983  0.042  C8   YN4 7  
YN4 C23  C23  C 0 1 Y N N 4.865  49.575 64.766 -2.547  2.207  0.708  C23  YN4 8  
YN4 N4   N4   N 0 1 Y N N 4.150  50.086 65.786 -3.801  2.663  0.854  N4   YN4 9  
YN4 C24  C24  C 0 1 Y N N 3.835  51.391 65.888 -4.835  2.007  0.396  C24  YN4 10 
YN4 C3   C3   C 0 1 Y N N 4.272  52.255 64.908 -4.692  0.785  -0.283 C3   YN4 11 
YN4 C    C    C 0 1 N N N 3.847  53.656 65.160 -5.874  0.075  -0.791 C    YN4 12 
YN4 O1   O1   O 0 1 N N N 4.735  54.659 64.817 -7.104  0.597  -0.612 O1   YN4 13 
YN4 C1   C1   C 0 1 N N N 4.330  56.022 65.163 -8.225  -0.159 -1.141 C1   YN4 14 
YN4 C2   C2   C 0 1 N N N 4.505  56.200 66.658 -9.528  0.586  -0.843 C2   YN4 15 
YN4 O    O    O 0 1 N N N 2.814  53.920 65.736 -5.743  -0.985 -1.374 O    YN4 16 
YN4 C22  C22  C 0 1 Y N N 5.098  48.213 64.723 -1.458  2.937  1.212  C22  YN4 17 
YN4 C21  C21  C 0 1 Y N N 5.808  47.711 63.691 -0.191  2.465  1.058  C21  YN4 18 
YN4 C10  C10  C 0 1 Y N N 6.286  48.449 62.630 0.050   1.256  0.401  C10  YN4 19 
YN4 C9   C9   C 0 1 Y N N 6.072  49.829 62.592 -0.995  0.515  -0.104 C9   YN4 20 
YN4 O2   O2   O 0 1 N N N 6.981  47.799 61.622 1.326   0.808  0.261  O2   YN4 21 
YN4 C11  C11  C 0 1 N N N 6.945  48.362 60.257 2.364   1.623  0.808  C11  YN4 22 
YN4 C12  C12  C 0 1 Y N N 5.755  47.717 59.584 3.700   0.970  0.558  C12  YN4 23 
YN4 C20  C20  C 0 1 Y N N 4.514  48.389 59.458 4.407   1.249  -0.594 C20  YN4 24 
YN4 N3   N3   N 0 1 Y N N 3.483  47.785 58.853 5.577   0.684  -0.823 N3   YN4 25 
YN4 C15  C15  C 0 1 Y N N 3.553  46.481 58.415 6.117   -0.167 0.036  C15  YN4 26 
YN4 C14  C14  C 0 1 Y N N 4.754  45.799 58.511 5.459   -0.494 1.217  C14  YN4 27 
YN4 C13  C13  C 0 1 Y N N 5.850  46.438 59.087 4.233   0.087  1.487  C13  YN4 28 
YN4 N1   N1   N 0 1 N N N 2.432  45.840 57.944 7.352   -0.740 -0.246 N1   YN4 29 
YN4 C19  C19  C 0 1 N N N 2.571  44.418 57.639 7.871   -0.264 -1.536 C19  YN4 30 
YN4 C18  C18  C 0 1 N N N 1.360  43.811 56.895 9.190   -0.976 -1.846 C18  YN4 31 
YN4 N2   N2   N 0 1 N N N 0.092  44.386 57.356 10.151  -0.714 -0.765 N2   YN4 32 
YN4 C17  C17  C 0 1 N N N -0.026 45.832 57.413 9.632   -1.189 0.525  C17  YN4 33 
YN4 C16  C16  C 0 1 N N N 1.126  46.453 58.180 8.313   -0.478 0.834  C16  YN4 34 
YN4 H61C H61C H 0 0 N N N 2.590  53.237 60.328 -5.315  -2.962 -0.287 H61C YN4 35 
YN4 H62C H62C H 0 0 N N N 3.129  53.710 61.975 -5.110  -1.599 0.839  H62C YN4 36 
YN4 H51C H51C H 0 0 N N N 4.543  51.344 60.680 -2.671  -2.036 0.924  H51C YN4 37 
YN4 H52C H52C H 0 0 N N N 4.961  52.968 60.036 -2.876  -3.400 -0.202 H52C YN4 38 
YN4 H9   H9   H 0 1 N N N 6.442  50.436 61.779 -0.804  -0.420 -0.611 H9   YN4 39 
YN4 H22  H22  H 0 1 N N N 4.720  47.564 65.499 -1.627  3.874  1.722  H22  YN4 40 
YN4 H24  H24  H 0 1 N N N 3.251  51.753 66.721 -5.824  2.417  0.539  H24  YN4 41 
YN4 H11C H11C H 0 0 N N N 4.960  56.746 64.625 -8.110  -0.274 -2.218 H11C YN4 42 
YN4 H12C H12C H 0 0 N N N 3.276  56.179 64.890 -8.254  -1.142 -0.671 H12C YN4 43 
YN4 H21C H21C H 0 0 N N N 4.206  57.219 66.944 -9.643  0.701  0.234  H21C YN4 44 
YN4 H22C H22C H 0 0 N N N 3.876  55.471 67.190 -9.500  1.569  -1.313 H22C YN4 45 
YN4 H23C H23C H 0 0 N N N 5.560  56.038 66.925 -10.370 0.018  -1.240 H23C YN4 46 
YN4 H21  H21  H 0 1 N N N 6.017  46.651 63.697 0.640   3.033  1.448  H21  YN4 47 
YN4 H111 H111 H 0 0 N N N 6.820  49.454 60.295 2.345   2.604  0.332  H111 YN4 48 
YN4 H112 H112 H 0 0 N N N 7.871  48.118 59.716 2.210   1.736  1.881  H112 YN4 49 
YN4 H20  H20  H 0 1 N N N 4.399  49.389 59.850 3.998   1.939  -1.318 H20  YN4 50 
YN4 H13  H13  H 0 1 N N N 6.795  45.918 59.144 3.701   -0.144 2.398  H13  YN4 51 
YN4 H14  H14  H 0 1 N N N 4.840  44.787 58.145 5.901   -1.189 1.916  H14  YN4 52 
YN4 H191 H191 H 0 0 N N N 3.464  44.285 57.011 7.148   -0.481 -2.322 H191 YN4 53 
YN4 H192 H192 H 0 0 N N N 2.704  43.873 58.585 8.042   0.811  -1.485 H192 YN4 54 
YN4 H161 H161 H 0 0 N N N 0.902  46.374 59.254 8.488   0.595  0.912  H161 YN4 55 
YN4 H162 H162 H 0 0 N N N 1.191  47.514 57.896 7.911   -0.850 1.777  H162 YN4 56 
YN4 H181 H181 H 0 0 N N N 1.469  44.007 55.818 9.015   -2.049 -1.924 H181 YN4 57 
YN4 H182 H182 H 0 0 N N N 1.343  42.725 57.070 9.592   -0.604 -2.788 H182 YN4 58 
YN4 H2   H2   H 0 1 N N N -0.624 44.054 56.742 11.047  -1.129 -0.970 H2   YN4 59 
YN4 H171 H171 H 0 0 N N N -0.030 46.231 56.388 9.461   -2.265 0.474  H171 YN4 60 
YN4 H172 H172 H 0 0 N N N -0.971 46.094 57.912 10.355  -0.973 1.310  H172 YN4 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YN4 N   C7   TRIP N N 1  
YN4 C7  C6   SING N N 2  
YN4 C6  C5   SING N N 3  
YN4 C5  S    SING N N 4  
YN4 S   C4   SING N N 5  
YN4 C4  C8   SING Y N 6  
YN4 C4  C3   DOUB Y N 7  
YN4 C8  C23  DOUB Y N 8  
YN4 C8  C9   SING Y N 9  
YN4 C23 N4   SING Y N 10 
YN4 C23 C22  SING Y N 11 
YN4 N4  C24  DOUB Y N 12 
YN4 C24 C3   SING Y N 13 
YN4 C3  C    SING N N 14 
YN4 C   O1   SING N N 15 
YN4 C   O    DOUB N N 16 
YN4 O1  C1   SING N N 17 
YN4 C1  C2   SING N N 18 
YN4 C22 C21  DOUB Y N 19 
YN4 C21 C10  SING Y N 20 
YN4 C10 C9   DOUB Y N 21 
YN4 C10 O2   SING N N 22 
YN4 O2  C11  SING N N 23 
YN4 C11 C12  SING N N 24 
YN4 C12 C20  SING Y N 25 
YN4 C12 C13  DOUB Y N 26 
YN4 C20 N3   DOUB Y N 27 
YN4 N3  C15  SING Y N 28 
YN4 C15 C14  DOUB Y N 29 
YN4 C15 N1   SING N N 30 
YN4 C14 C13  SING Y N 31 
YN4 N1  C19  SING N N 32 
YN4 N1  C16  SING N N 33 
YN4 C19 C18  SING N N 34 
YN4 C18 N2   SING N N 35 
YN4 N2  C17  SING N N 36 
YN4 C17 C16  SING N N 37 
YN4 C6  H61C SING N N 38 
YN4 C6  H62C SING N N 39 
YN4 C5  H51C SING N N 40 
YN4 C5  H52C SING N N 41 
YN4 C9  H9   SING N N 42 
YN4 C22 H22  SING N N 43 
YN4 C24 H24  SING N N 44 
YN4 C1  H11C SING N N 45 
YN4 C1  H12C SING N N 46 
YN4 C2  H21C SING N N 47 
YN4 C2  H22C SING N N 48 
YN4 C2  H23C SING N N 49 
YN4 C21 H21  SING N N 50 
YN4 C11 H111 SING N N 51 
YN4 C11 H112 SING N N 52 
YN4 C20 H20  SING N N 53 
YN4 C13 H13  SING N N 54 
YN4 C14 H14  SING N N 55 
YN4 C19 H191 SING N N 56 
YN4 C19 H192 SING N N 57 
YN4 C16 H161 SING N N 58 
YN4 C16 H162 SING N N 59 
YN4 C18 H181 SING N N 60 
YN4 C18 H182 SING N N 61 
YN4 N2  H2   SING N N 62 
YN4 C17 H171 SING N N 63 
YN4 C17 H172 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YN4 InChI            InChI                1.03  "InChI=1S/C25H27N5O3S/c1-2-32-25(31)21-16-28-22-6-5-19(14-20(22)24(21)34-13-3-8-26)33-17-18-4-7-23(29-15-18)30-11-9-27-10-12-30/h4-7,14-16,27H,2-3,9-13,17H2,1H3" 
YN4 InChIKey         InChI                1.03  BOXNSEIJTUHQDY-UHFFFAOYSA-N                                                                                                                                       
YN4 SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)c1cnc2ccc(OCc3ccc(nc3)N4CCNCC4)cc2c1SCCC#N"                                                                                                              
YN4 SMILES           CACTVS               3.385 "CCOC(=O)c1cnc2ccc(OCc3ccc(nc3)N4CCNCC4)cc2c1SCCC#N"                                                                                                              
YN4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCOC(=O)c1cnc2ccc(cc2c1SCCC#N)OCc3ccc(nc3)N4CCNCC4"                                                                                                              
YN4 SMILES           "OpenEye OEToolkits" 1.7.6 "CCOC(=O)c1cnc2ccc(cc2c1SCCC#N)OCc3ccc(nc3)N4CCNCC4"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YN4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "ethyl 4-(2-cyanoethylsulfanyl)-6-[(6-piperazin-1-ylpyridin-3-yl)methoxy]quinoline-3-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YN4 "Create component" 2016-04-06 EBI  
YN4 "Initial release"  2017-02-15 RCSB 
# 
