data_ZP4
# 
_chem_comp.id                                    ZP4 
_chem_comp.name                                  
"[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] [(2S,3S,5R)-3-azido-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H28 N10 O19 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        836.387 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZP4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3E4J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZP4 "O5'"  "O5'"  O 0  1 N N N -28.514 -34.411 55.129 4.224  -1.107 -1.052 O1  ZP4 1  
ZP4 "N3'"  "N3'"  N 0  1 N N N -27.607 -31.452 57.111 5.780  2.637  -3.325 N1  ZP4 2  
ZP4 N3A    N3A    N 1  1 N N N -28.417 -31.178 57.992 6.443  3.207  -4.031 N2  ZP4 3  
ZP4 N3B    N3B    N -1 1 N N N -29.049 -30.913 58.899 7.105  3.778  -4.737 N3  ZP4 4  
ZP4 N1     N1     N 0  1 N N N -29.317 -31.285 52.826 6.962  2.745  1.134  N4  ZP4 5  
ZP4 C6     C6     C 0  1 N N N -29.749 -32.574 52.651 6.850  3.910  1.843  C1  ZP4 6  
ZP4 C2     C2     C 0  1 N N N -30.051 -30.225 52.381 7.731  1.738  1.587  C2  ZP4 7  
ZP4 O2     O2     O 0  1 N N N -29.650 -29.070 52.435 7.811  0.709  0.943  O2  ZP4 8  
ZP4 N3     N3     N 0  1 N N N -31.276 -30.561 51.867 8.412  1.853  2.741  N5  ZP4 9  
ZP4 C4     C4     C 0  1 N N N -31.807 -31.820 51.743 8.333  2.987  3.467  C3  ZP4 10 
ZP4 O4     O4     O 0  1 N N N -32.959 -31.959 51.349 8.950  3.092  4.512  O3  ZP4 11 
ZP4 C5     C5     C 0  1 N N N -30.930 -32.890 52.131 7.523  4.052  3.005  C4  ZP4 12 
ZP4 C5A    C5A    C 0  1 N N N -31.373 -34.301 51.938 7.418  5.330  3.796  C5  ZP4 13 
ZP4 "C2'"  "C2'"  C 0  1 N N N -28.210 -30.501 54.965 7.217  2.465  -1.316 C6  ZP4 14 
ZP4 "C5'"  "C5'"  C 0  1 N N N -27.150 -34.041 55.092 5.320  -0.495 -1.734 C7  ZP4 15 
ZP4 "C4'"  "C4'"  C 0  1 N N S -27.056 -32.547 54.958 5.265  1.021  -1.529 C8  ZP4 16 
ZP4 "O4'"  "O4'"  O 0  1 N N N -27.341 -32.219 53.600 5.516  1.336  -0.149 O4  ZP4 17 
ZP4 "C1'"  "C1'"  C 0  1 N N R -28.062 -31.002 53.533 6.232  2.590  -0.127 C9  ZP4 18 
ZP4 "C3'"  "C3'"  C 0  1 N N S -28.062 -31.770 55.769 6.368  1.702  -2.362 C10 ZP4 19 
ZP4 PA     PA     P 0  1 N N R -28.939 -35.853 55.596 3.968  -2.697 -1.053 P1  ZP4 20 
ZP4 O1A    O1A    O 0  1 N N N -27.720 -36.704 55.727 5.178  -3.435 -0.289 O5  ZP4 21 
ZP4 O2A    O2A    O 0  1 N N N -30.060 -36.365 54.715 3.896  -3.184 -2.449 O6  ZP4 22 
ZP4 O3A    O3A    O 0  1 N N N -29.568 -35.528 57.037 2.582  -3.018 -0.301 O7  ZP4 23 
ZP4 PB     PB     P 0  1 N N R -28.799 -34.962 58.321 1.624  -4.310 -0.224 P2  ZP4 24 
ZP4 O1B    O1B    O 0  1 N N N -29.505 -33.677 58.615 2.229  -5.364 0.832  O8  ZP4 25 
ZP4 O2B    O2B    O 0  1 N N N -27.317 -34.918 58.116 1.541  -4.942 -1.559 O9  ZP4 26 
ZP4 O3B    O3B    O 0  1 N N N -29.143 -35.896 59.596 0.153  -3.860 0.250  O10 ZP4 27 
ZP4 PG     PG     P 0  1 N N S -29.601 -37.414 59.571 -1.293 -4.568 0.233  P3  ZP4 28 
ZP4 O1G    O1G    O 0  1 N N N -28.774 -38.176 58.594 -1.463 -5.313 -1.034 O11 ZP4 29 
ZP4 O2G    O2G    O 0  1 N N N -29.676 -37.963 60.973 -1.406 -5.588 1.474  O12 ZP4 30 
ZP4 O3G    O3G    O 0  1 N N N -31.043 -37.368 58.902 -2.442 -3.447 0.354  O13 ZP4 31 
ZP4 PD     PD     P 0  1 N N R -32.392 -38.048 59.481 -4.031 -3.441 0.097  P4  ZP4 32 
ZP4 O1D    O1D    O 0  1 N N N -32.624 -37.775 60.966 -4.319 -3.435 -1.487 O14 ZP4 33 
ZP4 O2D    O2D    O 0  1 N N N -33.503 -37.719 58.486 -4.633 -4.649 0.704  O15 ZP4 34 
ZP4 O51    O51    O 0  1 N N N -32.014 -39.590 59.270 -4.678 -2.126 0.765  O16 ZP4 35 
ZP4 C51    C51    C 0  1 N N N -32.461 -40.289 58.149 -6.086 -1.884 0.800  C11 ZP4 36 
ZP4 C41    C41    C 0  1 N N R -31.381 -40.163 57.071 -6.356 -0.552 1.503  C12 ZP4 37 
ZP4 O41    O41    O 0  1 N N N -30.376 -41.186 57.101 -5.838 0.531  0.713  O17 ZP4 38 
ZP4 C11    C11    C 0  1 N N R -29.912 -41.525 55.762 -6.728 1.653  0.900  C13 ZP4 39 
ZP4 C21    C21    C 0  1 N N R -30.800 -40.695 54.793 -8.135 1.002  0.899  C14 ZP4 40 
ZP4 O21    O21    O 0  1 N N N -30.150 -39.708 53.948 -9.071 1.810  1.614  O18 ZP4 41 
ZP4 C31    C31    C 0  1 N N S -31.965 -40.156 55.662 -7.875 -0.332 1.641  C15 ZP4 42 
ZP4 O31    O31    O 0  1 N N N -32.211 -38.754 55.362 -8.241 -0.217 3.018  O19 ZP4 43 
ZP4 N9R    N9R    N 0  1 Y N N -30.021 -43.041 55.586 -6.596 2.605  -0.205 N6  ZP4 44 
ZP4 C8R    C8R    C 0  1 Y N N -31.107 -43.813 55.905 -6.141 2.328  -1.459 C16 ZP4 45 
ZP4 N7R    N7R    N 0  1 Y N N -30.889 -45.128 55.656 -6.156 3.407  -2.187 N7  ZP4 46 
ZP4 C5R    C5R    C 0  1 Y N N -29.641 -45.243 55.165 -6.621 4.442  -1.448 C17 ZP4 47 
ZP4 C6R    C6R    C 0  1 Y N N -28.763 -46.362 54.697 -6.852 5.806  -1.694 C18 ZP4 48 
ZP4 N6R    N6R    N 0  1 N N N -29.213 -47.643 54.722 -6.588 6.357  -2.935 N8  ZP4 49 
ZP4 N1R    N1R    N 0  1 Y N N -27.491 -46.051 54.243 -7.331 6.556  -0.706 N9  ZP4 50 
ZP4 C2R    C2R    C 0  1 Y N N -27.008 -44.764 54.210 -7.587 6.039  0.482  C19 ZP4 51 
ZP4 N3R    N3R    N 0  1 Y N N -27.758 -43.701 54.632 -7.386 4.767  0.758  N10 ZP4 52 
ZP4 C4R    C4R    C 0  1 Y N N -29.061 -43.866 55.107 -6.915 3.940  -0.169 C20 ZP4 53 
ZP4 H6     H6     H 0  1 N N N -29.093 -33.377 52.953 6.228  4.712  1.475  H1  ZP4 54 
ZP4 HN3    HN3    H 0  1 N N N -31.846 -29.805 51.547 8.962  1.118  3.053  H2  ZP4 55 
ZP4 H5A    H5A    H 0  1 N N N -31.482 -34.508 50.863 8.032  5.254  4.694  H3  ZP4 56 
ZP4 H5AA   H5AA   H 0  0 N N N -30.624 -34.982 52.368 7.766  6.165  3.188  H4  ZP4 57 
ZP4 H5AB   H5AB   H 0  0 N N N -32.340 -34.453 52.440 6.379  5.497  4.081  H5  ZP4 58 
ZP4 "H2'"  "H2'"  H 0  1 N N N -29.185 -30.020 55.133 7.503  3.448  -1.690 H6  ZP4 59 
ZP4 "H2'A" "H2'A" H 0  0 N N N -27.478 -29.725 55.234 8.097  1.887  -1.034 H7  ZP4 60 
ZP4 "H5'"  "H5'"  H 0  1 N N N -26.654 -34.362 56.020 6.258  -0.882 -1.336 H8  ZP4 61 
ZP4 "H5'A" "H5'A" H 0  0 N N N -26.655 -34.524 54.236 5.256  -0.720 -2.799 H9  ZP4 62 
ZP4 "H4'"  "H4'"  H 0  1 N N N -26.049 -32.278 55.310 4.288  1.400  -1.827 H10 ZP4 63 
ZP4 "H1'"  "H1'"  H 0  1 N N N -27.569 -30.196 52.970 5.550  3.427  -0.280 H11 ZP4 64 
ZP4 "H3'"  "H3'"  H 0  1 N N N -28.989 -32.342 55.923 6.975  0.956  -2.875 H12 ZP4 65 
ZP4 HO1A   HO1A   H 0  0 N N N -27.365 -36.885 54.864 5.284  -3.164 0.633  H13 ZP4 66 
ZP4 HO1B   HO1B   H 0  0 N N N -29.655 -33.604 59.550 2.312  -5.017 1.731  H14 ZP4 67 
ZP4 HO2G   HO2G   H 0  0 N N N -29.692 -38.912 60.941 -1.304 -5.167 2.339  H15 ZP4 68 
ZP4 HO1D   HO1D   H 0  0 N N N -32.672 -38.599 61.436 -3.952 -2.670 -1.950 H16 ZP4 69 
ZP4 H51    H51    H 0  1 N N N -32.623 -41.347 58.402 -6.473 -1.843 -0.218 H17 ZP4 70 
ZP4 H51A   H51A   H 0  0 N N N -33.416 -39.877 57.791 -6.580 -2.689 1.344  H18 ZP4 71 
ZP4 H41    H41    H 0  1 N N N -30.909 -39.199 57.313 -5.888 -0.551 2.487  H19 ZP4 72 
ZP4 H11    H11    H 0  1 N N N -28.858 -41.279 55.564 -6.533 2.143  1.854  H20 ZP4 73 
ZP4 H21    H21    H 0  1 N N N -31.157 -41.354 53.988 -8.478 0.819  -0.119 H21 ZP4 74 
ZP4 HO21   HO21   H 0  0 N N N -30.008 -38.910 54.444 -9.966 1.444  1.642  H22 ZP4 75 
ZP4 H31    H31    H 0  1 N N N -32.886 -40.739 55.512 -8.424 -1.146 1.167  H23 ZP4 76 
ZP4 HO31   HO31   H 0  0 N N N -32.265 -38.261 56.172 -9.176 -0.020 3.162  H24 ZP4 77 
ZP4 H8R    H8R    H 0  1 N N N -32.029 -43.420 56.308 -5.815 1.356  -1.799 H25 ZP4 78 
ZP4 HN6R   HN6R   H 0  0 N N N -29.324 -47.976 53.786 -6.239 5.800  -3.649 H26 ZP4 79 
ZP4 HN6A   HN6A   H 0  0 N N N -28.553 -48.219 55.205 -6.751 7.300  -3.093 H27 ZP4 80 
ZP4 H2R    H2R    H 0  1 N N N -26.009 -44.588 53.841 -7.975 6.683  1.257  H28 ZP4 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZP4 "O5'" PA     SING N N 1  
ZP4 "N3'" N3A    DOUB N N 2  
ZP4 N3A   N3B    DOUB N N 3  
ZP4 N1    "C1'"  SING N N 4  
ZP4 C6    N1     SING N N 5  
ZP4 C6    H6     SING N N 6  
ZP4 C2    N1     SING N N 7  
ZP4 C2    O2     DOUB N N 8  
ZP4 N3    C2     SING N N 9  
ZP4 N3    HN3    SING N N 10 
ZP4 C4    N3     SING N N 11 
ZP4 C4    C5     SING N N 12 
ZP4 O4    C4     DOUB N N 13 
ZP4 C5    C6     DOUB N N 14 
ZP4 C5A   C5     SING N N 15 
ZP4 C5A   H5A    SING N N 16 
ZP4 C5A   H5AA   SING N N 17 
ZP4 C5A   H5AB   SING N N 18 
ZP4 "C2'" "C3'"  SING N N 19 
ZP4 "C2'" "H2'"  SING N N 20 
ZP4 "C2'" "H2'A" SING N N 21 
ZP4 "C5'" "O5'"  SING N N 22 
ZP4 "C5'" "H5'"  SING N N 23 
ZP4 "C5'" "H5'A" SING N N 24 
ZP4 "C4'" "C5'"  SING N N 25 
ZP4 "C4'" "C3'"  SING N N 26 
ZP4 "C4'" "H4'"  SING N N 27 
ZP4 "O4'" "C4'"  SING N N 28 
ZP4 "C1'" "C2'"  SING N N 29 
ZP4 "C1'" "O4'"  SING N N 30 
ZP4 "C1'" "H1'"  SING N N 31 
ZP4 "C3'" "N3'"  SING N N 32 
ZP4 "C3'" "H3'"  SING N N 33 
ZP4 PA    O1A    SING N N 34 
ZP4 PA    O3A    SING N N 35 
ZP4 O1A   HO1A   SING N N 36 
ZP4 O2A   PA     DOUB N N 37 
ZP4 O3A   PB     SING N N 38 
ZP4 PB    O1B    SING N N 39 
ZP4 PB    O3B    SING N N 40 
ZP4 O1B   HO1B   SING N N 41 
ZP4 O2B   PB     DOUB N N 42 
ZP4 PG    O3B    SING N N 43 
ZP4 PG    O2G    SING N N 44 
ZP4 O1G   PG     DOUB N N 45 
ZP4 O2G   HO2G   SING N N 46 
ZP4 O3G   PG     SING N N 47 
ZP4 O3G   PD     SING N N 48 
ZP4 PD    O1D    SING N N 49 
ZP4 O1D   HO1D   SING N N 50 
ZP4 O2D   PD     DOUB N N 51 
ZP4 O51   PD     SING N N 52 
ZP4 C51   O51    SING N N 53 
ZP4 C51   H51    SING N N 54 
ZP4 C51   H51A   SING N N 55 
ZP4 C41   C51    SING N N 56 
ZP4 C41   O41    SING N N 57 
ZP4 C41   H41    SING N N 58 
ZP4 C11   O41    SING N N 59 
ZP4 C11   H11    SING N N 60 
ZP4 C21   C11    SING N N 61 
ZP4 C21   C31    SING N N 62 
ZP4 C21   H21    SING N N 63 
ZP4 O21   C21    SING N N 64 
ZP4 O21   HO21   SING N N 65 
ZP4 C31   C41    SING N N 66 
ZP4 C31   H31    SING N N 67 
ZP4 O31   C31    SING N N 68 
ZP4 O31   HO31   SING N N 69 
ZP4 N9R   C11    SING N N 70 
ZP4 N9R   C8R    SING Y N 71 
ZP4 C8R   H8R    SING N N 72 
ZP4 N7R   C8R    DOUB Y N 73 
ZP4 C5R   N7R    SING Y N 74 
ZP4 C6R   C5R    DOUB Y N 75 
ZP4 C6R   N6R    SING N N 76 
ZP4 N6R   HN6R   SING N N 77 
ZP4 N6R   HN6A   SING N N 78 
ZP4 N1R   C6R    SING Y N 79 
ZP4 C2R   N1R    DOUB Y N 80 
ZP4 C2R   N3R    SING Y N 81 
ZP4 C2R   H2R    SING N N 82 
ZP4 N3R   C4R    DOUB Y N 83 
ZP4 C4R   N9R    SING Y N 84 
ZP4 C4R   C5R    SING Y N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZP4 SMILES_CANONICAL CACTVS               3.341 "CC1=CN([C@H]2C[C@H](N=[N+]=[N-])[C@@H](CO[P@](O)(=O)O[P@](O)(=O)O[P@](O)(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)O2)C(=O)NC1=O" 
ZP4 SMILES           CACTVS               3.341 "CC1=CN([CH]2C[CH](N=[N+]=[N-])[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)O2)C(=O)NC1=O" 
ZP4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)O[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)N=[N+]=[N-]" 
ZP4 SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)N=[N+]=[N-]" 
ZP4 InChI            InChI                1.03  
;InChI=1S/C20H28N10O19P4/c1-8-3-29(20(34)26-18(8)33)12-2-9(27-28-22)10(45-12)4-43-50(35,36)47-52(39,40)49-53(41,42)48-51(37,38)44-5-11-14(31)15(32)19(46-11)30-7-25-13-16(21)23-6-24-17(13)30/h3,6-7,9-12,14-15,19,31-32H,2,4-5H2,1H3,(H,35,36)(H,37,38)(H,39,40)(H,41,42)(H2,21,23,24)(H,26,33,34)/t9-,10+,11+,12+,14+,15+,19+/m0/s1
;
ZP4 InChIKey         InChI                1.03  NHJROJSMKQZWCP-SLFMBYJQSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZP4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 
"[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] [(2S,3S,5R)-3-azido-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZP4 "Create component"  2008-10-15 RCSB 
ZP4 "Modify descriptor" 2011-06-04 RCSB 
# 
