data_CF5
# 
_chem_comp.id                                    CF5 
_chem_comp.name                                  
;COFORMYCIN 5'-PHOSPHATE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H17 N4 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-06-29 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        364.248 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CF5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2A3L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CF5 O1P  O1P  O 0 1 N N N -13.565 -36.906 -17.466 -5.916 -0.173 0.129  O1P  CF5 1  
CF5 P    P    P 0 1 N N N -14.125 -38.101 -16.506 -5.023 0.950  -0.236 P    CF5 2  
CF5 O3P  O3P  O 0 1 N N N -15.391 -39.086 -17.414 -4.749 1.861  1.063  O3P  CF5 3  
CF5 O2P  O2P  O 0 1 N N N -12.610 -38.998 -15.925 -5.723 1.842  -1.379 O2P  CF5 4  
CF5 O5S  O5S  O 0 1 N N N -14.895 -37.457 -15.245 -3.627 0.369  -0.788 O5S  CF5 5  
CF5 C5S  C5S  C 0 1 N N N -16.280 -37.724 -14.991 -3.115 -0.504 0.221  C5S  CF5 6  
CF5 C4S  C4S  C 0 1 N N R -16.849 -36.666 -14.082 -1.782 -1.094 -0.244 C4S  CF5 7  
CF5 C3S  C3S  C 0 1 N N S -17.494 -37.260 -12.826 -1.231 -2.079 0.811  C3S  CF5 8  
CF5 O3S  O3S  O 0 1 N N N -16.768 -36.864 -11.687 -1.542 -3.426 0.449  O3S  CF5 9  
CF5 O4S  O4S  O 0 1 N N N -17.867 -35.834 -14.722 -0.781 -0.058 -0.340 O4S  CF5 10 
CF5 C1S  C1S  C 0 1 N N R -19.165 -35.973 -14.134 0.487  -0.749 -0.290 C1S  CF5 11 
CF5 C2S  C2S  C 0 1 N N R -18.910 -36.729 -12.862 0.298  -1.848 0.778  C2S  CF5 12 
CF5 O2S  O2S  O 0 1 N N N -19.142 -35.874 -11.770 0.978  -3.047 0.398  O2S  CF5 13 
CF5 N3   N3   N 0 1 Y N N -20.087 -36.908 -14.821 1.554  0.173  0.109  N3   CF5 14 
CF5 C2   C2   C 0 1 Y N N -19.871 -37.674 -15.932 1.400  1.338  0.786  C2   CF5 15 
CF5 C10  C10  C 0 1 Y N N -21.347 -37.210 -14.483 2.910  0.016  -0.135 C10  CF5 16 
CF5 N4   N4   N 0 1 N N N -22.143 -36.738 -13.417 3.418  -1.043 -0.805 N4   CF5 17 
CF5 C5   C5   C 0 1 N N N -22.905 -37.415 -12.690 4.627  -1.293 -1.125 C5   CF5 18 
CF5 N6   N6   N 0 1 N N N -23.113 -38.696 -12.803 5.708  -0.546 -0.820 N6   CF5 19 
CF5 C7   C7   C 0 1 N N N -23.265 -39.452 -13.978 5.712  0.902  -0.769 C7   CF5 20 
CF5 C8   C8   C 0 1 N N R -23.180 -38.595 -15.223 4.988  1.414  0.461  C8   CF5 21 
CF5 C9   C9   C 0 1 Y N N -21.892 -38.171 -15.392 3.521  1.090  0.416  C9   CF5 22 
CF5 N1   N1   N 0 1 Y N N -20.939 -38.428 -16.274 2.571  1.876  0.964  N1   CF5 23 
CF5 O8   O8   O 0 1 N N N -23.983 -37.357 -15.033 5.150  2.831  0.541  O8   CF5 24 
CF5 H3P  H3P  H 0 1 N N N -15.717 -39.781 -16.855 -4.165 2.579  0.783  H3P  CF5 25 
CF5 H2P  H2P  H 0 1 N N N -12.936 -39.693 -15.366 -6.553 2.171  -1.008 H2P  CF5 26 
CF5 H5S1 1H5S H 0 0 N N N -16.866 -37.824 -15.934 -3.827 -1.311 0.399  H5S1 CF5 27 
CF5 H5S2 2H5S H 0 0 N N N -16.441 -38.751 -14.589 -2.963 0.056  1.143  H5S2 CF5 28 
CF5 H4S  H4S  H 0 1 N N N -15.963 -36.042 -13.817 -1.904 -1.595 -1.204 H4S  CF5 29 
CF5 H3S  H3S  H 0 1 N N N -17.494 -38.374 -12.788 -1.632 -1.847 1.797  H3S  CF5 30 
CF5 H1   H1   H 0 1 N N N -17.168 -37.232 -10.908 -1.175 -3.993 1.141  H1   CF5 31 
CF5 H1S  H1S  H 0 1 N N N -19.612 -34.951 -14.107 0.714  -1.195 -1.258 H1S  CF5 32 
CF5 H2S  H2S  H 0 1 N N N -19.600 -37.602 -12.808 0.653  -1.501 1.749  H2S  CF5 33 
CF5 H3   H3   H 0 1 N N N -20.031 -35.540 -11.792 0.772  -3.710 1.071  H3   CF5 34 
CF5 H2   H2   H 0 1 N N N -18.924 -37.682 -16.498 0.460  1.751  1.121  H2   CF5 35 
CF5 H5   H5   H 0 1 N N N -23.425 -36.847 -11.900 4.802  -2.192 -1.698 H5   CF5 36 
CF5 HN6  HN6  H 0 1 N N N -23.941 -38.890 -12.241 6.537  -1.009 -0.622 HN6  CF5 37 
CF5 H71  1H7  H 0 1 N N N -22.532 -40.291 -14.015 5.221  1.292  -1.660 H71  CF5 38 
CF5 H72  2H7  H 0 1 N N N -24.210 -40.042 -13.958 6.743  1.255  -0.748 H72  CF5 39 
CF5 H8   H8   H 0 1 N N N -23.542 -39.198 -16.087 5.426  0.956  1.348  H8   CF5 40 
CF5 HO8  HO8  H 0 1 N N N -23.929 -36.819 -15.814 6.101  3.002  0.585  HO8  CF5 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CF5 O1P P    DOUB N N 1  
CF5 P   O3P  SING N N 2  
CF5 P   O2P  SING N N 3  
CF5 P   O5S  SING N N 4  
CF5 O3P H3P  SING N N 5  
CF5 O2P H2P  SING N N 6  
CF5 O5S C5S  SING N N 7  
CF5 C5S C4S  SING N N 8  
CF5 C5S H5S1 SING N N 9  
CF5 C5S H5S2 SING N N 10 
CF5 C4S C3S  SING N N 11 
CF5 C4S O4S  SING N N 12 
CF5 C4S H4S  SING N N 13 
CF5 C3S O3S  SING N N 14 
CF5 C3S C2S  SING N N 15 
CF5 C3S H3S  SING N N 16 
CF5 O3S H1   SING N N 17 
CF5 O4S C1S  SING N N 18 
CF5 C1S C2S  SING N N 19 
CF5 C1S N3   SING N N 20 
CF5 C1S H1S  SING N N 21 
CF5 C2S O2S  SING N N 22 
CF5 C2S H2S  SING N N 23 
CF5 O2S H3   SING N N 24 
CF5 N3  C2   SING Y N 25 
CF5 N3  C10  SING Y N 26 
CF5 C2  N1   DOUB Y N 27 
CF5 C2  H2   SING N N 28 
CF5 C10 N4   SING N N 29 
CF5 C10 C9   DOUB Y N 30 
CF5 N4  C5   DOUB N N 31 
CF5 C5  N6   SING N N 32 
CF5 C5  H5   SING N N 33 
CF5 N6  C7   SING N N 34 
CF5 N6  HN6  SING N N 35 
CF5 C7  C8   SING N N 36 
CF5 C7  H71  SING N N 37 
CF5 C7  H72  SING N N 38 
CF5 C8  C9   SING N N 39 
CF5 C8  O8   SING N N 40 
CF5 C8  H8   SING N N 41 
CF5 C9  N1   SING Y N 42 
CF5 O8  HO8  SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CF5 SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1c2N=CNCC1O)C(O)C3O"                                                                                                                            
CF5 SMILES_CANONICAL CACTVS               3.341 "O[C@@H]1CNC=Nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                                 
CF5 SMILES           CACTVS               3.341 "O[CH]1CNC=Nc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                         
CF5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=CNC[C@H]2O"                                                                                                  
CF5 SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)N=CNCC2O"                                                                                                                        
CF5 InChI            InChI                1.03  "InChI=1S/C11H17N4O8P/c16-5-1-12-3-13-10-7(5)14-4-15(10)11-9(18)8(17)6(23-11)2-22-24(19,20)21/h3-6,8-9,11,16-18H,1-2H2,(H,12,13)(H2,19,20,21)/t5-,6-,8-,9-,11-/m1/s1" 
CF5 InChIKey         InChI                1.03  LWLMFZVGOXTQAI-LODYRLCVSA-N                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CF5 "SYSTEMATIC NAME" ACDLabs              10.04 "(8R)-3-(5-O-phosphono-beta-D-ribofuranosyl)-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol"                                         
CF5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-[(8R)-8-hydroxy-7,8-dihydro-6H-imidazo[5,4-d][1,3]diazepin-3-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CF5 "Create component"  2005-06-29 RCSB 
CF5 "Modify descriptor" 2011-06-04 RCSB 
# 
