data_DM5
#

_chem_comp.id                                   DM5
_chem_comp.name                                 IDARUBICIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C26 H27 N O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        4-DEMETHOXY-DAUNORUBICIN
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       497.494
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DM5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1D67
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DM5  C1      C1    C  0  1  Y  N  N  -12.748  18.560   4.966  -0.481  -0.601  -6.318  C1      DM5   1  
DM5  C2      C2    C  0  1  Y  N  N  -11.592  19.243   4.982  -1.668  -0.492  -7.021  C2      DM5   2  
DM5  C3      C3    C  0  1  Y  N  N  -10.447  18.619   4.913  -2.804   0.000  -6.406  C3      DM5   3  
DM5  C4      C4    C  0  1  Y  N  N  -10.278  17.295   4.828  -2.771   0.390  -5.079  C4      DM5   4  
DM5  C5      C5    C  0  1  Y  N  N  -11.456  16.522   4.865  -1.586   0.286  -4.357  C5      DM5   5  
DM5  C6      C6    C  0  1  N  N  N  -11.392  14.986   4.813  -1.531   0.695  -2.936  C6      DM5   6  
DM5  O6      O6    O  0  1  N  N  N  -10.354  14.385   4.723  -2.431   1.353  -2.450  O6      DM5   7  
DM5  C7      C7    C  0  1  Y  N  N  -12.717  14.290   4.834  -0.372   0.296  -2.117  C7      DM5   8  
DM5  C8      C8    C  0  1  Y  N  N  -12.674  12.891   4.781  -0.404   0.408  -0.730  C8      DM5   9  
DM5  O8      O8    O  0  1  N  N  N  -11.516  12.167   4.781  -1.514   0.893  -0.120  O8      DM5  10  
DM5  C9      C9    C  0  1  Y  N  N  -13.889  12.147   4.770   0.702   0.024   0.039  C9      DM5  11  
DM5  C10     C10   C  0  1  N  N  S  -13.827  10.650   4.886   0.592   0.182   1.534  C10     DM5  12  
DM5  O10     O10   O  0  1  N  N  N  -13.215  10.419   6.121  -0.703  -0.244   1.959  O10     DM5  13  
DM5  C11     C11   C  0  1  N  N  N  -15.183  10.033   4.649   1.655  -0.653   2.243  C11     DM5  14  
DM5  C12     C12   C  0  1  N  N  S  -16.316  10.721   5.467   3.018  -0.330   1.619  C12     DM5  15  
DM5  O12     O12   O  0  1  N  N  N  -16.133  10.740   6.876   4.058  -0.924   2.398  O12     DM5  16  
DM5  C13     C13   C  0  1  N  N  N  -17.613  10.044   5.040   3.211   1.163   1.567  C13     DM5  17  
DM5  O13     O13   O  0  1  N  N  N  -18.301  10.292   3.995   2.941   1.772   0.560  O13     DM5  18  
DM5  C14     C14   C  0  1  N  N  N  -18.036   8.857   5.747   3.743   1.896   2.772  C14     DM5  19  
DM5  C15     C15   C  0  1  N  N  N  -16.412  12.122   4.897   3.045  -0.902   0.203  C15     DM5  20  
DM5  C16     C16   C  0  1  Y  N  N  -15.099  12.829   4.818   1.827  -0.466  -0.570  C16     DM5  21  
DM5  C17     C17   C  0  1  Y  N  N  -15.082  14.273   4.886   1.877  -0.582  -1.967  C17     DM5  22  
DM5  O17     O17   O  0  1  N  N  N  -16.297  14.980   4.781   2.995  -1.066  -2.563  O17     DM5  23  
DM5  C18     C18   C  0  1  Y  N  N  -13.881  14.966   4.876   0.787  -0.205  -2.745  C18     DM5  24  
DM5  C19     C19   C  0  1  N  N  N  -13.917  16.392   4.923   0.829  -0.324  -4.214  C19     DM5  25  
DM5  O19     O19   O  0  1  N  N  N  -14.991  17.075   4.934   1.885  -0.510  -4.787  O19     DM5  26  
DM5  C20     C20   C  0  1  Y  N  N  -12.708  17.148   4.918  -0.430  -0.214  -4.983  C20     DM5  27  
DM5  "C1'"   C1*   C  0  1  N  N  R  -12.336   9.280   6.459  -1.224   0.789   2.797  "C1'"   DM5  28  
DM5  "C2'"   C2*   C  0  1  N  N  N  -11.149   9.678   7.377  -2.724   0.565   3.005  "C2'"   DM5  29  
DM5  "C3'"   C3*   C  0  1  N  N  S  -11.674   9.810   8.844  -2.939  -0.811   3.644  "C3'"   DM5  30  
DM5  "N3'"   N3*   N  0  1  N  N  N  -10.659  10.591   9.583  -4.358  -0.977   3.989  "N3'"   DM5  31  
DM5  "C4'"   C4*   C  0  1  N  N  S  -12.533   8.626   9.282  -2.084  -0.900   4.913  "C4'"   DM5  32  
DM5  "O4'"   O4*   O  0  1  N  N  N  -11.476   7.547   9.134  -2.570   0.028   5.883  "O4'"   DM5  33  
DM5  "C5'"   C5*   C  0  1  N  N  S  -13.627   8.511   8.348  -0.633  -0.567   4.560  "C5'"   DM5  34  
DM5  "O5'"   O5*   O  0  1  N  N  N  -13.193   8.268   7.018  -0.553   0.764   4.055  "O5'"   DM5  35  
DM5  "C6'"   C6*   C  0  1  N  N  N  -14.462   7.490   8.876   0.235  -0.688   5.813  "C6'"   DM5  36  
DM5  H1      H1    H  0  1  N  N  N  -13.689  19.133   4.991   0.403  -0.986  -6.804  H1      DM5  37  
DM5  H2      H2    H  0  1  N  N  N  -11.582  20.343   5.053  -1.707  -0.793  -8.058  H2      DM5  38  
DM5  H3      H3    H  0  1  N  N  N   -9.550  19.261   4.927  -3.724   0.082  -6.966  H3      DM5  39  
DM5  H4      H4    H  0  1  N  N  N   -9.260  16.878   4.735  -3.662   0.775  -4.605  H4      DM5  40  
DM5  HO8     HO8   H  0  1  N  N  N  -11.486  11.218   4.745  -2.120   0.148  -0.010  HO8     DM5  41  
DM5  H10     H10   H  0  1  N  N  N  -13.220  10.140   4.101   0.728   1.232   1.795  H10     DM5  42  
DM5  H111    1H11  H  0  0  N  N  N  -15.429  10.019   3.561   1.670  -0.406   3.305  H111    DM5  43  
DM5  H112    2H11  H  0  0  N  N  N  -15.160   8.935   4.845   1.435  -1.713   2.115  H112    DM5  44  
DM5  HO12    2HO1  H  0  0  N  N  N  -16.824  11.159   7.374   4.894  -0.695   1.970  HO12    DM5  45  
DM5  H141    1H14  H  0  0  N  N  N  -18.984   8.361   5.434   3.814   2.960   2.547  H141    DM5  46  
DM5  H142    2H14  H  0  0  N  N  N  -17.210   8.107   5.722   3.068   1.747   3.615  H142    DM5  47  
DM5  H143    3H14  H  0  0  N  N  N  -18.087   9.083   6.837   4.731   1.511   3.025  H143    DM5  48  
DM5  H151    1H15  H  0  0  N  N  N  -16.911  12.107   3.900   3.941  -0.551  -0.308  H151    DM5  49  
DM5  H152    2H15  H  0  0  N  N  N  -17.152  12.729   5.468   3.066  -1.991   0.257  H152    DM5  50  
DM5  HO17    7HO1  H  0  0  N  N  N  -16.285  15.928   4.825   2.885  -2.024  -2.626  HO17    DM5  51  
DM5  "H1'"   H1*   H  0  1  N  N  N  -11.821   8.888   5.550  -1.065   1.756   2.320  "H1'"   DM5  52  
DM5  "H2'1"  1H2*  H  0  0  N  N  N  -10.289   8.973   7.293  -3.120   1.339   3.662  "H2'1"  DM5  53  
DM5  "H2'2"  2H2*  H  0  0  N  N  N  -10.627  10.598   7.025  -3.235   0.605   2.043  "H2'2"  DM5  54  
DM5  "H3'"   H3*   H  0  1  N  N  N  -12.547  10.440   9.132  -2.639  -1.590   2.943  "H3'"   DM5  55  
DM5  "HN'1"  1HN*  H  0  0  N  N  N  -11.001  10.677  10.539  -4.877  -0.897   3.127  "HN'1"  DM5  56  
DM5  "HN'2"  2HN*  H  0  0  N  N  N  -10.444  11.488   9.148  -4.469  -1.928   4.307  "HN'2"  DM5  57  
DM5  "H4'"   H4*   H  0  1  N  N  N  -13.020   8.640  10.284  -2.137  -1.911   5.317  "H4'"   DM5  58  
DM5  "HO4'"  *HO4  H  0  0  N  N  N  -12.010   6.810   9.406  -2.005  -0.060   6.663  "HO4'"  DM5  59  
DM5  "H5'"   H5*   H  0  1  N  N  N  -14.189   9.468   8.250  -0.275  -1.264   3.802  "H5'"   DM5  60  
DM5  "H6'1"  1H6*  H  0  0  N  N  N  -15.307   7.401   8.154   1.270  -0.453   5.563  "H6'1"  DM5  61  
DM5  "H6'2"  2H6*  H  0  0  N  N  N  -13.931   6.528   9.068  -0.121   0.008   6.572  "H6'2"  DM5  62  
DM5  "H6'3"  3H6*  H  0  0  N  N  N  -14.785   7.671   9.927   0.177  -1.706   6.199  "H6'3"  DM5  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DM5  C1     C2      DOUB  Y  N   1  
DM5  C1     C20     SING  Y  N   2  
DM5  C1     H1      SING  N  N   3  
DM5  C2     C3      SING  Y  N   4  
DM5  C2     H2      SING  N  N   5  
DM5  C3     C4      DOUB  Y  N   6  
DM5  C3     H3      SING  N  N   7  
DM5  C4     C5      SING  Y  N   8  
DM5  C4     H4      SING  N  N   9  
DM5  C5     C6      SING  N  N  10  
DM5  C5     C20     DOUB  Y  N  11  
DM5  C6     O6      DOUB  N  N  12  
DM5  C6     C7      SING  N  N  13  
DM5  C7     C8      DOUB  Y  N  14  
DM5  C7     C18     SING  Y  N  15  
DM5  C8     O8      SING  N  N  16  
DM5  C8     C9      SING  Y  N  17  
DM5  O8     HO8     SING  N  N  18  
DM5  C9     C10     SING  N  N  19  
DM5  C9     C16     DOUB  Y  N  20  
DM5  C10    O10     SING  N  N  21  
DM5  C10    C11     SING  N  N  22  
DM5  C10    H10     SING  N  N  23  
DM5  O10    "C1'"   SING  N  N  24  
DM5  C11    C12     SING  N  N  25  
DM5  C11    H111    SING  N  N  26  
DM5  C11    H112    SING  N  N  27  
DM5  C12    O12     SING  N  N  28  
DM5  C12    C13     SING  N  N  29  
DM5  C12    C15     SING  N  N  30  
DM5  O12    HO12    SING  N  N  31  
DM5  C13    O13     DOUB  N  N  32  
DM5  C13    C14     SING  N  N  33  
DM5  C14    H141    SING  N  N  34  
DM5  C14    H142    SING  N  N  35  
DM5  C14    H143    SING  N  N  36  
DM5  C15    C16     SING  N  N  37  
DM5  C15    H151    SING  N  N  38  
DM5  C15    H152    SING  N  N  39  
DM5  C16    C17     SING  Y  N  40  
DM5  C17    O17     SING  N  N  41  
DM5  C17    C18     DOUB  Y  N  42  
DM5  O17    HO17    SING  N  N  43  
DM5  C18    C19     SING  N  N  44  
DM5  C19    O19     DOUB  N  N  45  
DM5  C19    C20     SING  N  N  46  
DM5  "C1'"  "C2'"   SING  N  N  47  
DM5  "C1'"  "O5'"   SING  N  N  48  
DM5  "C1'"  "H1'"   SING  N  N  49  
DM5  "C2'"  "C3'"   SING  N  N  50  
DM5  "C2'"  "H2'1"  SING  N  N  51  
DM5  "C2'"  "H2'2"  SING  N  N  52  
DM5  "C3'"  "N3'"   SING  N  N  53  
DM5  "C3'"  "C4'"   SING  N  N  54  
DM5  "C3'"  "H3'"   SING  N  N  55  
DM5  "N3'"  "HN'1"  SING  N  N  56  
DM5  "N3'"  "HN'2"  SING  N  N  57  
DM5  "C4'"  "O4'"   SING  N  N  58  
DM5  "C4'"  "C5'"   SING  N  N  59  
DM5  "C4'"  "H4'"   SING  N  N  60  
DM5  "O4'"  "HO4'"  SING  N  N  61  
DM5  "C5'"  "O5'"   SING  N  N  62  
DM5  "C5'"  "C6'"   SING  N  N  63  
DM5  "C5'"  "H5'"   SING  N  N  64  
DM5  "C6'"  "H6'1"  SING  N  N  65  
DM5  "C6'"  "H6'2"  SING  N  N  66  
DM5  "C6'"  "H6'3"  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DM5  SMILES            ACDLabs               10.04  "O=C2c1c(O)c5c(c(O)c1C(=O)c3ccccc23)CC(O)(C(=O)C)CC5OC4OC(C(O)C(N)C4)C"  
DM5  SMILES_CANONICAL  CACTVS                3.341  "C[C@@H]1O[C@H](C[C@H](N)[C@@H]1O)O[C@H]2C[C@@](O)(Cc3c(O)c4C(=O)c5ccccc5C(=O)c4c(O)c23)C(C)=O"  
DM5  SMILES            CACTVS                3.341  "C[CH]1O[CH](C[CH](N)[CH]1O)O[CH]2C[C](O)(Cc3c(O)c4C(=O)c5ccccc5C(=O)c4c(O)c23)C(C)=O"  
DM5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5ccccc5C4=O)O)(C(=O)C)O)N)O"  
DM5  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5ccccc5C4=O)O)(C(=O)C)O)N)O"  
DM5  InChI             InChI                 1.03   "InChI=1S/C26H27NO9/c1-10-21(29)15(27)7-17(35-10)36-16-9-26(34,11(2)28)8-14-18(16)25(33)20-19(24(14)32)22(30)12-5-3-4-6-13(12)23(20)31/h3-6,10,15-17,21,29,32-34H,7-9,27H2,1-2H3/t10-,15-,16-,17-,21+,26-/m0/s1"  
DM5  InChIKey          InChI                 1.03   XDXDZDZNSLXDNA-TZNDIEGXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DM5  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,3S)-3-acetyl-3,5,12-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside"  
DM5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(7S,9S)-7-[(2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyl-oxan-2-yl]oxy-9-ethanoyl-6,9,11-trihydroxy-8,10-dihydro-7H-tetracene-5,12-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DM5  "Create component"   1999-07-08  RCSB  
DM5  "Modify descriptor"  2011-06-04  RCSB  
DM5  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DM5
_pdbx_chem_comp_synonyms.name        4-DEMETHOXY-DAUNORUBICIN
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
