data_FN5
# 
_chem_comp.id                                    FN5 
_chem_comp.name                                  "CMP-3F(a)-Neu5Ac" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H30 F N4 O14 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-06-15 
_chem_comp.pdbx_modified_date                    2012-08-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.432 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FN5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3S44 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FN5 P      P      P 0 1 N N N 11.462 7.515  -7.550  -0.289 -0.971 1.320  P      FN5 1  
FN5 N1     N1     N 0 1 N N N 15.512 10.414 -5.979  5.797  0.581  -0.666 N1     FN5 2  
FN5 C2     C2     C 0 1 N N N 16.714 11.118 -5.940  5.797  0.877  0.646  C2     FN5 3  
FN5 O2     O2     O 0 1 N N N 17.346 11.330 -4.885  5.099  0.229  1.408  O2     FN5 4  
FN5 N3     N3     N 0 1 N N N 17.256 11.628 -7.075  6.548  1.866  1.128  N3     FN5 5  
FN5 C4     C4     C 0 1 N N N 16.623 11.413 -8.237  7.317  2.587  0.321  C4     FN5 6  
FN5 N4     N4     N 0 1 N N N 17.167 11.921 -9.364  8.089  3.606  0.830  N4     FN5 7  
FN5 C5     C5     C 0 1 N N N 15.432 10.711 -8.315  7.339  2.303  -1.059 C5     FN5 8  
FN5 C6     C6     C 0 1 N N N 14.881 10.177 -7.152  6.574  1.290  -1.533 C6     FN5 9  
FN5 "C1'"  "C1'"  C 0 1 N N R 15.003 9.805  -4.746  4.961  -0.513 -1.166 "C1'"  FN5 10 
FN5 O2P    O2P    O 0 1 N N N 12.065 6.187  -7.985  -1.293 0.223  0.920  O2P    FN5 11 
FN5 "C2'"  "C2'"  C 0 1 N N R 13.622 10.280 -4.351  5.439  -1.872 -0.593 "C2'"  FN5 12 
FN5 "O2'"  "O2'"  O 0 1 N N N 13.713 11.406 -3.466  6.478  -2.428 -1.401 "O2'"  FN5 13 
FN5 O1P    O1P    O 0 1 N N N 9.944  7.498  -7.419  -1.083 -2.371 1.289  O1P    FN5 14 
FN5 "C3'"  "C3'"  C 0 1 N N S 12.970 9.065  -3.737  4.154  -2.730 -0.677 "C3'"  FN5 15 
FN5 "O3'"  "O3'"  O 0 1 N N N 13.251 9.088  -2.348  4.171  -3.542 -1.853 "O3'"  FN5 16 
FN5 O3P    O3P    O 0 1 N N N 11.783 8.566  -8.570  0.241  -0.734 2.681  O3P    FN5 17 
FN5 "C4'"  "C4'"  C 0 1 N N R 13.713 7.879  -4.348  3.013  -1.696 -0.752 "C4'"  FN5 18 
FN5 "O4'"  "O4'"  O 0 1 N N N 14.830 8.413  -5.098  3.612  -0.392 -0.665 "O4'"  FN5 19 
FN5 "C5'"  "C5'"  C 0 1 N N N 12.814 7.068  -5.267  2.043  -1.906 0.412  "C5'"  FN5 20 
FN5 "O5'"  "O5'"  O 0 1 N N N 12.066 7.946  -6.122  0.930  -1.022 0.270  "O5'"  FN5 21 
FN5 HN4    HN4    H 0 1 N N N 18.020 12.441 -9.317  8.072  3.799  1.780  HN4    FN5 22 
FN5 HN4A   HN4A   H 0 0 N N N 16.717 11.777 -10.245 8.649  4.131  0.238  HN4A   FN5 23 
FN5 H5     H5     H 0 1 N N N 14.936 10.579 -9.265  7.959  2.880  -1.729 H5     FN5 24 
FN5 H6     H6     H 0 1 N N N 13.975 9.590  -7.186  6.574  1.052  -2.586 H6     FN5 25 
FN5 "H1'"  "H1'"  H 0 1 N N N 15.691 10.039 -3.920  4.967  -0.533 -2.256 "H1'"  FN5 26 
FN5 C10    C10    C 0 1 N N S 12.802 6.102  -9.207  -2.419 0.593  1.717  C10    FN5 27 
FN5 "H2'"  "H2'"  H 0 1 N N N 13.020 10.650 -5.194  5.768  -1.763 0.441  "H2'"  FN5 28 
FN5 "HO2'" "HO2'" H 0 0 N N N 12.839 11.693 -3.227  6.811  -3.279 -1.083 "HO2'" FN5 29 
FN5 HO1P   HO1P   H 0 0 N N N 9.568  8.145  -8.004  -1.459 -2.592 0.426  HO1P   FN5 30 
FN5 "H3'"  "H3'"  H 0 1 N N N 11.884 9.022  -3.905  4.050  -3.351 0.213  "H3'"  FN5 31 
FN5 "HO3'" "HO3'" H 0 0 N N N 12.853 8.333  -1.931  4.904  -4.172 -1.885 "HO3'" FN5 32 
FN5 "H4'"  "H4'"  H 0 1 N N N 14.052 7.203  -3.549  2.483  -1.798 -1.699 "H4'"  FN5 33 
FN5 "H5'"  "H5'"  H 0 1 N N N 13.433 6.400  -5.884  1.691  -2.937 0.410  "H5'"  FN5 34 
FN5 "H5'A" "H5'A" H 0 0 N N N 12.117 6.471  -4.660  2.554  -1.699 1.352  "H5'A" FN5 35 
FN5 O9     O9     O 0 1 N N N 11.781 4.950  -9.207  -3.563 -0.157 1.304  O9     FN5 36 
FN5 C11    C11    C 0 1 N N R 12.269 3.489  -9.207  -3.915 0.026  -0.070 C11    FN5 37 
FN5 C12    C12    C 0 1 N N R 13.778 3.181  -9.207  -4.255 1.498  -0.317 C12    FN5 38 
FN5 C13    C13    C 0 1 N N R 14.799 4.334  -9.207  -3.056 2.365  0.078  C13    FN5 39 
FN5 C14    C14    C 0 1 N N R 14.311 5.794  -9.207  -2.700 2.088  1.542  C14    FN5 40 
FN5 F1     F1     F 0 1 N N N 14.930 6.332  -10.452 -3.770 2.462  2.362  F1     FN5 41 
FN5 O10    O10    O 0 1 N N N 15.335 4.121  -10.516 -3.391 3.745  -0.080 O10    FN5 42 
FN5 N41    N41    N 0 1 N N N 13.172 2.276  -8.118  -4.559 1.698  -1.736 N41    FN5 43 
FN5 C15    C15    C 0 1 N N N 13.383 1.047  -9.022  -5.346 2.723  -2.118 C15    FN5 44 
FN5 O11    O11    O 0 1 N N N 13.841 0.865  -10.138 -5.804 3.479  -1.288 O11    FN5 45 
FN5 C16    C16    C 0 1 N N N 12.778 0.142  -7.932  -5.658 2.930  -3.578 C16    FN5 46 
FN5 C17    C17    C 0 1 N N R 11.929 3.036  -10.639 -5.129 -0.842 -0.405 C17    FN5 47 
FN5 C18    C18    C 0 1 N N R 10.990 1.954  -10.074 -4.832 -2.298 -0.039 C18    FN5 48 
FN5 C19    C19    C 0 1 N N N 10.418 1.236  -11.311 -6.046 -3.166 -0.375 C19    FN5 49 
FN5 O12    O12    O 0 1 N N N 9.658  0.375  -10.460 -5.814 -4.503 0.073  O12    FN5 50 
FN5 O13    O13    O 0 1 N N N 12.178 1.167  -10.191 -3.700 -2.754 -0.783 O13    FN5 51 
FN5 O14    O14    O 0 1 N N N 10.741 3.823  -10.522 -6.261 -0.386 0.339  O14    FN5 52 
FN5 H14    H14    H 0 1 N N N 12.977 6.885  -9.960  -2.207 0.384  2.766  H14    FN5 53 
FN5 H15    H15    H 0 1 N N N 11.837 3.045  -8.298  -3.075 -0.264 -0.701 H15    FN5 54 
FN5 H16    H16    H 0 1 N N N 14.511 2.808  -9.937  -5.121 1.777  0.285  H16    FN5 55 
FN5 H17    H17    H 0 1 N N N 15.405 4.283  -8.291  -2.204 2.120  -0.557 H17    FN5 56 
FN5 H18    H18    H 0 1 N N N 14.597 6.241  -8.243  -1.813 2.660  1.816  H18    FN5 57 
FN5 H19    H19    H 0 1 N N N 16.007 4.769  -10.693 -2.676 4.352  0.153  H19    FN5 58 
FN5 H20    H20    H 0 1 N N N 12.797 2.425  -7.203  -4.193 1.094  -2.400 H20    FN5 59 
FN5 H21    H21    H 0 1 N N N 12.777 -0.902 -8.280  -6.165 2.048  -3.970 H21    FN5 60 
FN5 H22    H22    H 0 1 N N N 13.379 0.222  -7.014  -6.304 3.800  -3.692 H22    FN5 61 
FN5 H23    H23    H 0 1 N N N 11.746 0.460  -7.723  -4.731 3.090  -4.128 H23    FN5 62 
FN5 H24    H24    H 0 1 N N N 12.656 2.951  -11.460 -5.343 -0.772 -1.472 H24    FN5 63 
FN5 H25    H25    H 0 1 N N N 10.288 2.160  -9.252  -4.618 -2.369 1.027  H25    FN5 64 
FN5 H26    H26    H 0 1 N N N 9.848  1.855  -12.020 -6.929 -2.765 0.123  H26    FN5 65 
FN5 H27    H27    H 0 1 N N N 11.146 0.751  -11.978 -6.206 -3.167 -1.453 H27    FN5 66 
FN5 H28    H28    H 0 1 N N N 9.157  -0.233 -10.990 -6.545 -5.111 -0.107 H28    FN5 67 
FN5 H29    H29    H 0 1 N N N 12.935 1.703  -9.984  -3.820 -2.720 -1.742 H29    FN5 68 
FN5 H30    H30    H 0 1 N N N 10.239 3.761  -11.326 -6.141 -0.421 1.298  H30    FN5 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FN5 P     O1P    SING N N 1  
FN5 P     "O5'"  SING N N 2  
FN5 N1    C2     SING N N 3  
FN5 N1    "C1'"  SING N N 4  
FN5 C2    O2     DOUB N N 5  
FN5 N3    C2     SING N N 6  
FN5 C4    N3     DOUB N N 7  
FN5 N4    C4     SING N N 8  
FN5 N4    HN4    SING N N 9  
FN5 N4    HN4A   SING N N 10 
FN5 C5    C4     SING N N 11 
FN5 C5    C6     DOUB N N 12 
FN5 C5    H5     SING N N 13 
FN5 C6    N1     SING N N 14 
FN5 C6    H6     SING N N 15 
FN5 "C1'" "C2'"  SING N N 16 
FN5 "C1'" "H1'"  SING N N 17 
FN5 O2P   P      SING N N 18 
FN5 O2P   C10    SING N N 19 
FN5 "C2'" "C3'"  SING N N 20 
FN5 "C2'" "O2'"  SING N N 21 
FN5 "C2'" "H2'"  SING N N 22 
FN5 "O2'" "HO2'" SING N N 23 
FN5 O1P   HO1P   SING N N 24 
FN5 "C3'" "O3'"  SING N N 25 
FN5 "C3'" "H3'"  SING N N 26 
FN5 "O3'" "HO3'" SING N N 27 
FN5 O3P   P      DOUB N N 28 
FN5 "C4'" "C3'"  SING N N 29 
FN5 "C4'" "H4'"  SING N N 30 
FN5 "O4'" "C1'"  SING N N 31 
FN5 "O4'" "C4'"  SING N N 32 
FN5 "C5'" "C4'"  SING N N 33 
FN5 "C5'" "H5'"  SING N N 34 
FN5 "C5'" "H5'A" SING N N 35 
FN5 "O5'" "C5'"  SING N N 36 
FN5 C10   O9     SING N N 37 
FN5 C10   C14    SING N N 38 
FN5 O9    C11    SING N N 39 
FN5 C11   C12    SING N N 40 
FN5 C12   C13    SING N N 41 
FN5 C13   C14    SING N N 42 
FN5 C14   F1     SING N N 43 
FN5 C13   O10    SING N N 44 
FN5 C12   N41    SING N N 45 
FN5 N41   C15    SING N N 46 
FN5 C15   O11    DOUB N N 47 
FN5 C15   C16    SING N N 48 
FN5 C11   C17    SING N N 49 
FN5 C17   C18    SING N N 50 
FN5 C18   C19    SING N N 51 
FN5 C19   O12    SING N N 52 
FN5 C18   O13    SING N N 53 
FN5 C17   O14    SING N N 54 
FN5 C10   H14    SING N N 55 
FN5 C11   H15    SING N N 56 
FN5 C12   H16    SING N N 57 
FN5 C13   H17    SING N N 58 
FN5 C14   H18    SING N N 59 
FN5 O10   H19    SING N N 60 
FN5 N41   H20    SING N N 61 
FN5 C16   H21    SING N N 62 
FN5 C16   H22    SING N N 63 
FN5 C16   H23    SING N N 64 
FN5 C17   H24    SING N N 65 
FN5 C18   H25    SING N N 66 
FN5 C19   H26    SING N N 67 
FN5 C19   H27    SING N N 68 
FN5 O12   H28    SING N N 69 
FN5 O13   H29    SING N N 70 
FN5 O14   H30    SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FN5 SMILES           ACDLabs              12.01 "O=C1N=C(N)C=CN1C2OC(C(O)C2O)COP(=O)(O)OC3OC(C(NC(=O)C)C(O)C3F)C(O)C(O)CO" 
FN5 InChI            InChI                1.03  
;InChI=1S/C19H30FN4O14P/c1-6(26)22-11-14(30)10(20)18(37-16(11)12(28)7(27)4-25)38-39(33,34)35-5-8-13(29)15(31)17(36-8)24-3-2-9(21)23-19(24)32/h2-3,7-8,10-18,25,27-31H,4-5H2,1H3,(H,22,26)(H,33,34)(H2,21,23,32)/t7-,8-,10-,11-,12-,13-,14+,15-,16-,17-,18+/m1/s1
;
FN5 InChIKey         InChI                1.03  DLSXHRIQCIXYOE-DOSPZCANSA-N 
FN5 SMILES_CANONICAL CACTVS               3.370 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@@H](O[C@H]1[C@H](O)[C@H](O)CO)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=NC3=O)N" 
FN5 SMILES           CACTVS               3.370 "CC(=O)N[CH]1[CH](O)[CH](F)[CH](O[CH]1[CH](O)[CH](O)CO)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=NC3=O)N" 
FN5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC(=O)N[C@@H]1[C@H]([C@H]([C@@H](O[C@H]1[C@@H]([C@@H](CO)O)O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O)F)O" 
FN5 SMILES           "OpenEye OEToolkits" 1.7.2 "CC(=O)NC1C(C(C(OC1C(C(CO)O)O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)O)F)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FN5 "SYSTEMATIC NAME" ACDLabs              12.01 
"(2S,3R,4R,5R,6R)-5-(acetylamino)-3-fluoro-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-phosphate (non-preferred name)" 
FN5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 
"[(2S,3R,4R,5R,6R)-5-acetamido-3-fluoranyl-4-oxidanyl-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxan-2-yl] [(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"                                
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FN5 "Create component" 2011-06-15 RCSB 
# 
