data_RF5
#

_chem_comp.id                                   RF5
_chem_comp.name                                 2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 F O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;Inhibitor arabinosyl-2-fluoro-2-deoxynicotinamide mononucleotide, bound form;
2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinose; 2-deoxy-2-fluoro-5-O-phosphono-D-arabinose;
2-deoxy-2-fluoro-5-O-phosphono-arabinose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-07-30
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       232.101
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RF5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3DZF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  RF5  "Inhibitor arabinosyl-2-fluoro-2-deoxynicotinamide mononucleotide, bound form"  PDB  ?  
2  RF5  2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinose                                PDB  ?  
3  RF5  2-deoxy-2-fluoro-5-O-phosphono-D-arabinose                                      PDB  ?  
4  RF5  2-deoxy-2-fluoro-5-O-phosphono-arabinose                                        PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RF5  P     P     P  0  1  N  N  N  4.513  -0.706  -5.942  -3.047  -0.010  -0.028  P     RF5   1  
RF5  C1    C1    C  0  1  N  N  S  2.449  -2.567  -1.383   2.695  -1.235  -0.211  C1    RF5   2  
RF5  O1    O1    O  0  1  N  Y  N  1.559  -3.720  -1.061   3.010  -2.037   0.929  O1    RF5   3  
RF5  C2    C2    C  0  1  N  N  S  2.309  -1.177  -0.804   3.275   0.182  -0.031  C2    RF5   4  
RF5  F2    F2    F  0  1  N  N  N  3.173  -1.156   0.245   4.112   0.508  -1.103  F2    RF5   5  
RF5  C3    C3    C  0  1  N  N  R  2.660  -0.241  -1.927   2.030   1.102  -0.015  C3    RF5   6  
RF5  O3    O3    O  0  1  N  N  N  1.893   0.923  -1.700   2.161   2.121   0.978  O3    RF5   7  
RF5  C4    C4    C  0  1  N  N  R  2.074  -1.061  -3.055   0.898   0.110   0.357  C4    RF5   8  
RF5  O4    O4    O  0  1  N  N  N  2.653  -2.338  -2.743   1.270  -1.101  -0.336  O4    RF5   9  
RF5  C5    C5    C  0  1  N  N  N  2.435  -0.587  -4.449  -0.454   0.623  -0.143  C5    RF5  10  
RF5  O5    O5    O  0  1  N  N  N  3.884  -0.640  -4.506  -1.492  -0.247   0.313  O5    RF5  11  
RF5  OP1   OP1   O  0  1  N  N  N  3.897   0.439  -6.738  -3.445   1.350   0.401  OP1   RF5  12  
RF5  OP2   OP2   O  0  1  N  N  N  4.081  -2.091  -6.378  -3.279  -0.160  -1.614  OP2   RF5  13  
RF5  OP3   OP3   O  0  1  N  N  N  5.950  -0.402  -5.639  -3.940  -1.101   0.750  OP3   RF5  14  
RF5  H1    H1    H  0  1  N  N  N  3.432  -2.894  -1.013   3.107  -1.692  -1.111  H1    RF5  15  
RF5  HO1   HO1   H  0  1  N  Y  N  1.476  -3.803  -0.118   2.673  -2.942   0.878  HO1   RF5  16  
RF5  H2    H2    H  0  1  N  N  N  1.269  -1.009  -0.487   3.817   0.255   0.912  H2    RF5  17  
RF5  H3    H3    H  0  1  N  N  N  3.742  -0.071  -2.031   1.857   1.539  -0.998  H3    RF5  18  
RF5  HO3   HO3   H  0  1  N  Y  N  2.072   1.559  -2.383   2.913   2.713   0.836  HO3   RF5  19  
RF5  H4    H4    H  0  1  N  N  N  0.979  -1.097  -2.952   0.872  -0.056   1.434  H4    RF5  20  
RF5  H51   H5    H  0  1  N  N  N  1.995  -1.250  -5.208  -0.627   1.628   0.244  H51   RF5  21  
RF5  H52   H5A   H  0  1  N  N  N  2.080   0.442  -4.611  -0.453   0.649  -1.232  H52   RF5  22  
RF5  HOP2  HOP2  H  0  0  N  N  N  3.473  -2.020  -7.104  -3.039  -1.029  -1.966  HOP2  RF5  23  
RF5  HOP3  HOP3  H  0  0  N  N  N  6.180   0.443  -6.007  -4.890  -1.018   0.591  HOP3  RF5  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RF5  OP1  P     DOUB  N  N   1  
RF5  OP2  P     SING  N  N   2  
RF5  P    OP3   SING  N  N   3  
RF5  P    O5    SING  N  N   4  
RF5  O4   C1    SING  N  N   5  
RF5  C1   O1    SING  N  N   6  
RF5  C1   C2    SING  N  N   7  
RF5  C1   H1    SING  N  N   8  
RF5  O1   HO1   SING  N  N   9  
RF5  C3   C2    SING  N  N  10  
RF5  C2   F2    SING  N  N  11  
RF5  C2   H2    SING  N  N  12  
RF5  C4   C3    SING  N  N  13  
RF5  C3   O3    SING  N  N  14  
RF5  C3   H3    SING  N  N  15  
RF5  O3   HO3   SING  N  N  16  
RF5  C5   C4    SING  N  N  17  
RF5  C4   O4    SING  N  N  18  
RF5  C4   H4    SING  N  N  19  
RF5  O5   C5    SING  N  N  20  
RF5  C5   H51   SING  N  N  21  
RF5  C5   H52   SING  N  N  22  
RF5  OP2  HOP2  SING  N  N  23  
RF5  OP3  HOP3  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RF5  SMILES            ACDLabs               12.01  "FC1C(O)C(OC1O)COP(=O)(O)O"  
RF5  InChI             InChI                 1.03   "InChI=1S/C5H10FO7P/c6-3-4(7)2(13-5(3)8)1-12-14(9,10)11/h2-5,7-8H,1H2,(H2,9,10,11)/t2-,3+,4-,5+/m1/s1"  
RF5  InChIKey          InChI                 1.03   NOTDWSJIOCLYHZ-LECHCGJUSA-N  
RF5  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1F"  
RF5  SMILES            CACTVS                3.370  "O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1F"  
RF5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@H](O1)O)F)O)OP(=O)(O)O"  
RF5  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(O1)O)F)O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RF5  "SYSTEMATIC NAME"            ACDLabs               12.01  2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose  
RF5  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.6  "[(2R,3R,4S,5S)-4-fluoranyl-3,5-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"  
RF5  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-Araf2fluoro5PO3  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
RF5  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
RF5  "CARBOHYDRATE RING"                    furanose  PDB  ?  
RF5  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
RF5  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RF5  "Create component"          2008-07-30  RCSB  
RF5  "Modify descriptor"         2011-06-04  RCSB  
RF5  "Other modification"        2013-01-08  RCSB  
RF5  "Other modification"        2020-07-03  RCSB  
RF5  "Modify synonyms"           2020-07-17  RCSB  
RF5  "Modify linking type"       2020-07-17  RCSB  
RF5  "Modify atom id"            2020-07-17  RCSB  
RF5  "Modify component atom id"  2020-07-17  RCSB  
RF5  "Modify leaving atom flag"  2020-07-17  RCSB  
##
