data_SL5
# 
_chem_comp.id                                    SL5 
_chem_comp.name                                  "(2S,4S,5R)-2-[(2-hydroxyethoxy)methyl]-5-methyl-1,3-oxazolidine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H15 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-06-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        205.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SL5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4AWS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SL5 C    C    C 0 1 N N N Y N Y 14.111 -22.436 -8.558  -2.898 0.839  -0.153 C    SL5 1  
SL5 N    N    N 0 1 N N N Y Y N 12.264 -23.669 -9.737  -0.542 0.786  0.531  N    SL5 2  
SL5 O    O    O 0 1 N N N Y N Y 14.513 -21.659 -7.629  -3.127 1.375  0.906  O    SL5 3  
SL5 C5   C5   C 0 1 N N S N N N 12.274 -24.957 -9.034  -0.054 -0.368 1.319  C5   SL5 4  
SL5 C6   C6   C 0 1 N N N N N N 11.376 -26.101 -9.489  1.438  -0.210 1.619  C6   SL5 5  
SL5 O7   O7   O 0 1 N N N N N N 12.107 -26.745 -10.525 2.166  -0.140 0.392  O7   SL5 6  
SL5 C8   C8   C 0 1 N N N N N N 12.182 -28.129 -11.163 3.577  0.009  0.561  C8   SL5 7  
SL5 C9   C9   C 0 1 N N N N N N 12.993 -28.614 -12.328 4.252  0.072  -0.811 C9   SL5 8  
SL5 CA   CA   C 0 1 N N S Y N N 12.649 -22.711 -8.697  -1.542 0.236  -0.414 CA   SL5 9  
SL5 CB   CB   C 0 1 N N R N N N 12.058 -23.268 -7.428  -1.562 -1.281 -0.125 CB   SL5 10 
SL5 O10  O10  O 0 1 N N N N N N 12.113 -30.247 -12.574 3.826  1.251  -1.497 O10  SL5 11 
SL5 OG1  OG1  O 0 1 N N N N N N 11.740 -24.611 -7.778  -0.275 -1.528 0.489  OG1  SL5 12 
SL5 CG2  CG2  C 0 1 N N N N N N 10.788 -22.507 -7.008  -1.699 -2.075 -1.426 CG2  SL5 13 
SL5 OXT  OXT  O 0 1 N Y N Y N Y 15.001 -22.975 -9.388  -3.853 0.775  -1.093 OXT  SL5 14 
SL5 H    HN   H 0 1 N Y N Y Y N 12.924 -23.666 -10.488 -0.957 1.484  1.130  HN   SL5 15 
SL5 H5   H5   H 0 1 N N N N N N 13.306 -25.324 -8.934  -0.618 -0.455 2.248  H5   SL5 16 
SL5 H6   H6   H 0 1 N N N N N N 11.184 -26.797 -8.659  1.599  0.705  2.190  H6   SL5 17 
SL5 H6A  H6A  H 0 1 N N N N N N 10.420 -25.715 -9.872  1.784  -1.065 2.199  H6A  SL5 18 
SL5 H8   H8   H 0 1 N N N N N N 12.481 -28.789 -10.336 3.782  0.928  1.109  H8   SL5 19 
SL5 H8A  H8A  H 0 1 N N N N N N 11.143 -28.348 -11.450 3.968  -0.842 1.119  H8A  SL5 20 
SL5 H9A  H9A  H 0 1 N N N N N N 12.904 -27.954 -13.204 5.334  0.096  -0.683 H9A  SL5 21 
SL5 H9B  H9B  H 0 1 N N N N N N 14.055 -28.745 -12.074 3.974  -0.807 -1.393 H9B  SL5 22 
SL5 HA   HA   H 0 1 N N N Y N N 12.146 -21.756 -8.908  -1.235 0.425  -1.443 HA   SL5 23 
SL5 HB   HB   H 0 1 N N N N N N 12.799 -23.230 -6.616  -2.369 -1.529 0.564  HB   SL5 24 
SL5 HO10 HO10 H 0 0 N N N N N N 12.507 -30.713 -13.302 4.215  1.357  -2.376 HO10 SL5 25 
SL5 HG2  HG2  H 0 1 N N N N N N 10.389 -22.943 -6.080  -0.856 -1.850 -2.079 HG2  SL5 26 
SL5 HG2A HG2A H 0 0 N N N N N N 11.034 -21.448 -6.839  -1.712 -3.141 -1.201 HG2A SL5 27 
SL5 HG2B HG2B H 0 0 N N N N N N 10.033 -22.586 -7.804  -2.628 -1.797 -1.924 HG2B SL5 28 
SL5 HXT  HXT  H 0 1 N Y N Y N Y 15.873 -22.682 -9.152  -4.709 1.172  -0.878 HXT  SL5 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SL5 C   O    DOUB N N 1  
SL5 C   CA   SING N N 2  
SL5 C   OXT  SING N N 3  
SL5 N   C5   SING N N 4  
SL5 N   CA   SING N N 5  
SL5 C5  C6   SING N N 6  
SL5 C5  OG1  SING N N 7  
SL5 C6  O7   SING N N 8  
SL5 O7  C8   SING N N 9  
SL5 C8  C9   SING N N 10 
SL5 CA  CB   SING N N 11 
SL5 CB  OG1  SING N N 12 
SL5 CB  CG2  SING N N 13 
SL5 N   H    SING N N 14 
SL5 C5  H5   SING N N 15 
SL5 C6  H6   SING N N 16 
SL5 C6  H6A  SING N N 17 
SL5 C8  H8   SING N N 18 
SL5 C8  H8A  SING N N 19 
SL5 C9  H9A  SING N N 20 
SL5 C9  H9B  SING N N 21 
SL5 CA  HA   SING N N 22 
SL5 CB  HB   SING N N 23 
SL5 C9  O10  SING N N 24 
SL5 O10 HO10 SING N N 25 
SL5 CG2 HG2  SING N N 26 
SL5 CG2 HG2A SING N N 27 
SL5 CG2 HG2B SING N N 28 
SL5 OXT HXT  SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SL5 InChI            InChI                1.03  "InChI=1S/C8H15NO4.H2O/c1-3-12-4-6-9-7(8(10)11)5(2)13-6;/h5-7,9H,3-4H2,1-2H3,(H,10,11);1H2/p-1/t5-,6+,7+;/m1./s1" 
SL5 InChIKey         InChI                1.03  DCKIKIARQLUQCX-NLRFIBDTSA-M                                                                                       
SL5 SMILES           ACDLabs              12.01 "O=C(O)C1NC(OC1C)COCCO"                                                                                           
SL5 SMILES_CANONICAL CACTVS               3.370 "C[C@H]1O[C@@H](COCCO)N[C@@H]1C(O)=O"                                                                             
SL5 SMILES           CACTVS               3.370 "C[CH]1O[CH](COCCO)N[CH]1C(O)=O"                                                                                  
SL5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H](N[C@@H](O1)COCCO)C(=O)O"                                                                           
SL5 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(NC(O1)COCCO)C(=O)O"                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SL5 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,4S,5R)-2-[(2-hydroxyethoxy)methyl]-5-methyl-1,3-oxazolidine-4-carboxylic acid" 
SL5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,4S,5R)-2-(2-hydroxyethyloxymethyl)-5-methyl-1,3-oxazolidine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SL5 "Create component" 2012-06-06 EBI  
SL5 "Initial release"  2013-06-26 RCSB 
SL5 "Modify backbone"  2023-11-03 PDBE 
SL5 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            SL5 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
