data_SP5
#

_chem_comp.id                                   SP5
_chem_comp.name                                 "N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]acetamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H28 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        N1-AcSpermine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-03-31
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       244.377
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SP5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3CND
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SP5  CAB   CAB   C  0  1  N  N  N  56.391  -58.553  59.258    8.749  -0.830   0.008  CAB   SP5   1  
SP5  CAC   CAC   C  0  1  N  N  N  57.169  -57.460  58.523    7.533   0.060   0.000  CAC   SP5   2  
SP5  OAA   OAA   O  0  1  N  N  N  58.061  -56.832  59.092    7.663   1.265  -0.011  OAA   SP5   3  
SP5  NAD   NAD   N  0  1  N  N  N  56.827  -57.279  57.248    6.300  -0.485   0.006  NAD   SP5   4  
SP5  CAE   CAE   C  0  1  N  N  N  55.781  -58.083  56.600    5.117   0.380  -0.002  CAE   SP5   5  
SP5  CAF   CAF   C  0  1  N  N  N  55.705  -57.768  55.105    3.854  -0.484   0.007  CAF   SP5   6  
SP5  CAG   CAG   C  0  1  N  N  N  54.680  -58.680  54.430    2.619   0.419  -0.002  CAG   SP5   7  
SP5  NAH   NAH   N  0  1  N  N  N  53.854  -57.922  53.480    1.406  -0.410   0.007  NAH   SP5   8  
SP5  CAI   CAI   C  0  1  N  N  N  52.464  -57.829  53.950    0.198   0.425  -0.001  CAI   SP5   9  
SP5  CAJ   CAJ   C  0  1  N  N  N  51.913  -56.449  53.583   -1.042  -0.472   0.008  CAJ   SP5  10  
SP5  CAK   CAK   C  0  1  N  N  N  51.068  -56.498  52.309   -2.301   0.398   0.000  CAK   SP5  11  
SP5  CAL   CAL   C  0  1  N  N  N  50.160  -55.274  52.172   -3.540  -0.499   0.009  CAL   SP5  12  
SP5  NAM   NAM   N  0  1  N  N  N  50.487  -54.312  53.234   -4.749   0.336   0.002  NAM   SP5  13  
SP5  CAN   CAN   C  0  1  N  N  N  49.947  -52.996  52.864   -5.961  -0.493   0.010  CAN   SP5  14  
SP5  CAO   CAO   C  0  1  N  N  N  50.556  -52.549  51.533   -7.196   0.410   0.002  CAO   SP5  15  
SP5  CAP   CAP   C  0  1  N  N  N  50.050  -51.158  51.146   -8.460  -0.454   0.010  CAP   SP5  16  
SP5  NAQ   NAQ   N  0  1  N  N  N  51.174  -50.211  51.098   -9.645   0.413   0.002  NAQ   SP5  17  
SP5  HAB   HAB   H  0  1  N  N  N  56.204  -59.394  58.574    9.043  -1.034   1.038  HAB   SP5  18  
SP5  HABA  HABA  H  0  0  N  N  N  56.978  -58.905  60.119    8.517  -1.767  -0.497  HABA  SP5  19  
SP5  HABB  HABB  H  0  0  N  N  N  55.431  -58.146  59.609    9.568  -0.331  -0.511  HABB  SP5  20  
SP5  HNAD  HNAD  H  0  0  N  N  N  57.296  -56.575  56.716    6.196  -1.449   0.015  HNAD  SP5  21  
SP5  HAE   HAE   H  0  1  N  N  N  56.015  -59.150  56.731    5.127   1.017   0.882  HAE   SP5  22  
SP5  HAEA  HAEA  H  0  0  N  N  N  54.812  -57.843  57.062    5.127   1.000  -0.898  HAEA  SP5  23  
SP5  HAF   HAF   H  0  1  N  N  N  55.403  -56.719  54.969    3.844  -1.122  -0.877  HAF   SP5  24  
SP5  HAFA  HAFA  H  0  0  N  N  N  56.692  -57.935  54.650    3.845  -1.105   0.902  HAFA  SP5  25  
SP5  HAG   HAG   H  0  1  N  N  N  55.210  -59.477  53.888    2.629   1.057   0.882  HAG   SP5  26  
SP5  HAGA  HAGA  H  0  0  N  N  N  54.026  -59.110  55.203    2.629   1.040  -0.898  HAGA  SP5  27  
SP5  HNAH  HNAH  H  0  0  N  N  N  54.228  -56.999  53.387    1.405  -1.056  -0.769  HNAH  SP5  28  
SP5  HAI   HAI   H  0  1  N  N  N  51.857  -58.611  53.470    0.191   1.063   0.883  HAI   SP5  29  
SP5  HAIA  HAIA  H  0  0  N  N  N  52.427  -57.969  55.040    0.191   1.046  -0.897  HAIA  SP5  30  
SP5  HAJ   HAJ   H  0  1  N  N  N  51.284  -56.088  54.410   -1.035  -1.110  -0.876  HAJ   SP5  31  
SP5  HAJA  HAJA  H  0  0  N  N  N  52.764  -55.775  53.406   -1.035  -1.092   0.904  HAJA  SP5  32  
SP5  HAK   HAK   H  0  1  N  N  N  51.743  -56.533  51.441   -2.307   1.036   0.884  HAK   SP5  33  
SP5  HAKA  HAKA  H  0  0  N  N  N  50.428  -57.392  52.360   -2.308   1.019  -0.896  HAKA  SP5  34  
SP5  HAL   HAL   H  0  1  N  N  N  50.317  -54.806  51.189   -3.533  -1.137  -0.875  HAL   SP5  35  
SP5  HALA  HALA  H  0  0  N  N  N  49.108  -55.581  52.262   -3.533  -1.120   0.905  HALA  SP5  36  
SP5  HNAM  HNAM  H  0  0  N  N  N  50.081  -54.612  54.097   -4.747   0.982   0.777  HNAM  SP5  37  
SP5  HAN   HAN   H  0  1  N  N  N  48.854  -53.064  52.762   -5.972  -1.131  -0.874  HAN   SP5  38  
SP5  HANA  HANA  H  0  0  N  N  N  50.198  -52.264  53.646   -5.971  -1.114   0.906  HANA  SP5  39  
SP5  HAO   HAO   H  0  1  N  N  N  51.651  -52.518  51.632   -7.186   1.048   0.886  HAO   SP5  40  
SP5  HAOA  HAOA  H  0  0  N  N  N  50.260  -53.264  50.751   -7.187   1.031  -0.894  HAOA  SP5  41  
SP5  HAP   HAP   H  0  1  N  N  N  49.573  -51.207  50.156   -8.470  -1.091  -0.874  HAP   SP5  42  
SP5  HAPA  HAPA  H  0  0  N  N  N  49.321  -50.817  51.895   -8.469  -1.074   0.906  HAPA  SP5  43  
SP5  HNAQ  HNAQ  H  0  0  N  N  N  51.389  -49.996  50.145   -9.627   1.044  -0.785  HNAQ  SP5  44  
SP5  HNAA  HNAA  H  0  0  N  N  N  50.923  -49.372  51.581  -10.493  -0.134   0.008  HNAA  SP5  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SP5  CAB  CAC   SING  N  N   1  
SP5  CAC  OAA   DOUB  N  N   2  
SP5  CAC  NAD   SING  N  N   3  
SP5  NAD  CAE   SING  N  N   4  
SP5  CAE  CAF   SING  N  N   5  
SP5  CAF  CAG   SING  N  N   6  
SP5  CAG  NAH   SING  N  N   7  
SP5  NAH  CAI   SING  N  N   8  
SP5  CAI  CAJ   SING  N  N   9  
SP5  CAJ  CAK   SING  N  N  10  
SP5  CAK  CAL   SING  N  N  11  
SP5  CAL  NAM   SING  N  N  12  
SP5  NAM  CAN   SING  N  N  13  
SP5  CAN  CAO   SING  N  N  14  
SP5  CAO  CAP   SING  N  N  15  
SP5  CAP  NAQ   SING  N  N  16  
SP5  CAB  HAB   SING  N  N  17  
SP5  CAB  HABA  SING  N  N  18  
SP5  CAB  HABB  SING  N  N  19  
SP5  NAD  HNAD  SING  N  N  20  
SP5  CAE  HAE   SING  N  N  21  
SP5  CAE  HAEA  SING  N  N  22  
SP5  CAF  HAF   SING  N  N  23  
SP5  CAF  HAFA  SING  N  N  24  
SP5  CAG  HAG   SING  N  N  25  
SP5  CAG  HAGA  SING  N  N  26  
SP5  NAH  HNAH  SING  N  N  27  
SP5  CAI  HAI   SING  N  N  28  
SP5  CAI  HAIA  SING  N  N  29  
SP5  CAJ  HAJ   SING  N  N  30  
SP5  CAJ  HAJA  SING  N  N  31  
SP5  CAK  HAK   SING  N  N  32  
SP5  CAK  HAKA  SING  N  N  33  
SP5  CAL  HAL   SING  N  N  34  
SP5  CAL  HALA  SING  N  N  35  
SP5  NAM  HNAM  SING  N  N  36  
SP5  CAN  HAN   SING  N  N  37  
SP5  CAN  HANA  SING  N  N  38  
SP5  CAO  HAO   SING  N  N  39  
SP5  CAO  HAOA  SING  N  N  40  
SP5  CAP  HAP   SING  N  N  41  
SP5  CAP  HAPA  SING  N  N  42  
SP5  NAQ  HNAQ  SING  N  N  43  
SP5  NAQ  HNAA  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SP5  SMILES            ACDLabs               10.04  "O=C(NCCCNCCCCNCCCN)C"  
SP5  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)NCCCNCCCCNCCCN"  
SP5  SMILES            CACTVS                3.341  "CC(=O)NCCCNCCCCNCCCN"  
SP5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)NCCCNCCCCNCCCN"  
SP5  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NCCCNCCCCNCCCN"  
SP5  InChI             InChI                 1.03   "InChI=1S/C12H28N4O/c1-12(17)16-11-5-10-15-8-3-2-7-14-9-4-6-13/h14-15H,2-11,13H2,1H3,(H,16,17)"  
SP5  InChIKey          InChI                 1.03   GUNURVWAJRRUAV-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SP5  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]acetamide"  
SP5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-[3-[4-(3-aminopropylamino)butylamino]propyl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SP5  "Create component"   2008-03-31  RCSB  
SP5  "Modify descriptor"  2011-06-04  RCSB  
SP5  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SP5
_pdbx_chem_comp_synonyms.name        N1-AcSpermine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
