data_WS5
# 
_chem_comp.id                                    WS5 
_chem_comp.name                                  "(2~{S})-1-[(4-fluorophenyl)methylsulfonyl]-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-(pyridin-3-ylmethylamino)pentan-2-yl]piperidine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 F N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-17 
_chem_comp.pdbx_modified_date                    2024-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        504.617 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WS5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P3D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WS5 N1  N1  N 0 1 N N N N N N 1.634  -2.993  12.642 2.994  2.353  0.313  N1  WS5 1  
WS5 N3  N2  N 0 1 N N N N N N 1.737  -7.610  16.902 -3.905 0.546  0.280  N3  WS5 2  
WS5 C4  C1  C 0 1 Y N N N N N -0.427 -5.193  9.910  3.720  -1.500 -0.795 C4  WS5 3  
WS5 C5  C2  C 0 1 N N N N N N 0.078  -4.704  11.237 3.489  -0.022 -0.972 C5  WS5 4  
WS5 C6  C3  C 0 1 N N S N N N 2.680  -3.680  13.341 1.650  2.862  0.010  C6  WS5 5  
WS5 C7  C4  C 0 1 N N N N N N 2.408  -4.455  14.581 0.685  1.708  -0.097 C7  WS5 6  
WS5 C8  C5  C 0 1 N N S N N N 0.854  -5.527  15.963 -1.439 0.645  0.446  C8  WS5 7  
WS5 C10 C6  C 0 1 N N N N N N -1.195 -4.162  16.828 -2.104 -1.665 1.128  C10 WS5 8  
WS5 C13 C7  C 0 1 N N N N N N 1.255  -6.996  15.814 -2.814 1.181  0.752  C13 WS5 9  
WS5 C15 C8  C 0 1 Y N N N N N 3.250  -9.548  16.621 -6.273 0.235  -0.148 C15 WS5 10 
WS5 C17 C9  C 0 1 Y N N N N N 5.718  -10.478 15.955 -8.142 -1.351 -1.328 C17 WS5 11 
WS5 C20 C10 C 0 1 N N N N N N 3.751  -2.625  13.662 1.696  3.617  -1.321 C20 WS5 12 
WS5 C21 C11 C 0 1 N N N N N N 3.150  -1.447  14.466 2.777  4.699  -1.252 C21 WS5 13 
WS5 C22 C12 C 0 1 N N N N N N 1.996  -0.832  13.693 4.141  4.045  -1.019 C22 WS5 14 
WS5 C24 C13 C 0 1 Y N N N N N -1.396 -4.504  9.202  2.648  -2.373 -0.806 C24 WS5 15 
WS5 C1  C14 C 0 1 Y N N N N N -1.258 -6.072  7.450  4.145  -4.214 -0.470 C1  WS5 16 
WS5 C11 C15 C 0 1 N N N N N N -2.719 -4.187  16.904 -1.890 -2.207 -0.287 C11 WS5 17 
WS5 C12 C16 C 0 1 N N N N N N -0.628 -3.912  18.203 -1.863 -2.783 2.144  C12 WS5 18 
WS5 C14 C17 C 0 1 N N N N N N 1.862  -9.060  16.948 -5.233 1.136  0.467  C14 WS5 19 
WS5 C16 C18 C 0 1 Y N N N N N 3.497  -10.271 15.466 -6.641 0.392  -1.471 C16 WS5 20 
WS5 C18 C19 C 0 1 Y N N N N N 5.563  -9.772  17.110 -7.821 -1.570 -0.002 C18 WS5 21 
WS5 C19 C20 C 0 1 Y N N N N N 4.316  -9.306  17.452 -6.869 -0.765 0.605  C19 WS5 22 
WS5 C2  C21 C 0 1 Y N N N N N -0.292 -6.770  8.096  5.218  -3.339 -0.464 C2  WS5 23 
WS5 C23 C22 C 0 1 N N N N N N 0.976  -1.904  13.361 4.122  3.295  0.316  C23 WS5 24 
WS5 C25 C23 C 0 1 Y N N N N N -1.849 -4.962  7.971  2.859  -3.729 -0.644 C25 WS5 25 
WS5 C3  C24 C 0 1 Y N N N N N 0.112  -6.328  9.344  5.005  -1.983 -0.626 C3  WS5 26 
WS5 C9  C25 C 0 1 N N N N N N -0.641 -5.470  16.297 -1.124 -0.519 1.388  C9  WS5 27 
WS5 F1  F1  F 0 1 N N N N N N -1.665 -6.523  6.240  4.352  -5.539 -0.311 F1  WS5 28 
WS5 N2  N3  N 0 1 N N N N N N 1.141  -4.718  14.802 -0.447 1.707  0.634  N2  WS5 29 
WS5 N4  N4  N 0 1 Y N N N N N 4.706  -10.749 15.117 -7.550 -0.393 -2.015 N4  WS5 30 
WS5 O1  O1  O 0 1 N N N N N N 2.481  -4.030  10.564 4.435  0.726  1.408  O1  WS5 31 
WS5 O2  O2  O 0 1 N N N N N N 1.125  -7.590  14.732 -2.938 2.184  1.422  O2  WS5 32 
WS5 O3  O3  O 0 1 N N N N N N 3.295  -4.931  15.288 0.929  0.781  -0.840 O3  WS5 33 
WS5 O4  O4  O 0 1 N N N N N N 0.730  -2.274  10.505 2.002  0.323  1.216  O4  WS5 34 
WS5 S1  S1  S 0 1 N N N N N N 1.318  -3.416  11.141 3.234  0.749  0.650  S1  WS5 35 
WS5 H17 H1  H 0 1 N N N N N N 2.015  -7.066  17.693 -3.811 -0.301 -0.183 H17 WS5 36 
WS5 H4  H2  H 0 1 N N N N N N -0.778 -4.313  11.806 4.358  0.427  -1.454 H4  WS5 37 
WS5 H3  H3  H 0 1 N N N N N N 0.514  -5.560  11.773 2.607  0.137  -1.592 H3  WS5 38 
WS5 H5  H4  H 0 1 N N N N N N 3.144  -4.378  12.629 1.328  3.537  0.803  H5  WS5 39 
WS5 H7  H5  H 0 1 N N N N N N 1.403  -5.117  16.824 -1.406 0.296  -0.586 H7  WS5 40 
WS5 H10 H6  H 0 1 N N N N N N -0.886 -3.346  16.159 -3.126 -1.299 1.226  H10 WS5 41 
WS5 H21 H7  H 0 1 N N N N N N 6.704  -10.837 15.702 -8.881 -1.974 -1.809 H21 WS5 42 
WS5 H25 H8  H 0 1 N N N N N N 4.550  -3.094  14.255 1.930  2.921  -2.127 H25 WS5 43 
WS5 H24 H9  H 0 1 N N N N N N 4.170  -2.240  12.720 0.728  4.082  -1.510 H24 WS5 44 
WS5 H27 H10 H 0 1 N N N N N N 2.785  -1.816  15.436 2.795  5.254  -2.189 H27 WS5 45 
WS5 H26 H11 H 0 1 N N N N N N 3.926  -0.685  14.632 2.556  5.380  -0.430 H26 WS5 46 
WS5 H29 H12 H 0 1 N N N N N N 2.376  -0.387  12.761 4.352  3.345  -1.827 H29 WS5 47 
WS5 H28 H13 H 0 1 N N N N N N 1.520  -0.051  14.305 4.913  4.814  -0.994 H28 WS5 48 
WS5 H32 H14 H 0 1 N N N N N N -1.807 -3.594  9.614  1.646  -1.995 -0.942 H32 WS5 49 
WS5 H13 H15 H 0 1 N N N N N N -3.083 -3.224  17.292 -0.894 -2.643 -0.362 H13 WS5 50 
WS5 H12 H16 H 0 1 N N N N N N -3.133 -4.357  15.899 -2.638 -2.971 -0.500 H12 WS5 51 
WS5 H11 H17 H 0 1 N N N N N N -3.039 -4.998  17.575 -1.986 -1.394 -1.006 H11 WS5 52 
WS5 H16 H18 H 0 1 N N N N N N -1.024 -2.965  18.597 -0.841 -3.149 2.046  H16 WS5 53 
WS5 H14 H19 H 0 1 N N N N N N -0.915 -4.736  18.873 -2.015 -2.396 3.152  H14 WS5 54 
WS5 H15 H20 H 0 1 N N N N N N 0.469  -3.853  18.142 -2.561 -3.599 1.959  H15 WS5 55 
WS5 H19 H21 H 0 1 N N N N N N 1.159  -9.495  16.222 -5.434 1.248  1.533  H19 WS5 56 
WS5 H18 H22 H 0 1 N N N N N N 1.601  -9.401  17.961 -5.268 2.113  -0.015 H18 WS5 57 
WS5 H20 H23 H 0 1 N N N N N N 2.667  -10.464 14.803 -6.179 1.166  -2.065 H20 WS5 58 
WS5 H22 H24 H 0 1 N N N N N N 6.411  -9.581  17.750 -8.306 -2.359 0.554  H22 WS5 59 
WS5 H23 H25 H 0 1 N N N N N N 4.175  -8.753  18.369 -6.598 -0.914 1.640  H23 WS5 60 
WS5 H1  H26 H 0 1 N N N N N N 0.151  -7.648  7.649  6.221  -3.716 -0.328 H1  WS5 61 
WS5 H30 H27 H 0 1 N N N N N N 0.183  -1.474  12.731 4.002  4.005  1.133  H30 WS5 62 
WS5 H31 H28 H 0 1 N N N N N N 0.535  -2.292  14.291 5.056  2.746  0.440  H31 WS5 63 
WS5 H33 H29 H 0 1 N N N N N N -2.644 -4.454  7.445  2.022  -4.411 -0.653 H33 WS5 64 
WS5 H2  H30 H 0 1 N N N N N N 0.864  -6.883  9.885  5.842  -1.301 -0.622 H2  WS5 65 
WS5 H8  H31 H 0 1 N N N N N N -1.193 -5.711  15.376 -0.106 -0.864 1.211  H8  WS5 66 
WS5 H9  H32 H 0 1 N N N N N N -0.838 -6.242  17.055 -1.221 -0.186 2.421  H9  WS5 67 
WS5 H6  H33 H 0 1 N N N N N N 0.417  -4.378  14.202 -0.606 2.409  1.283  H6  WS5 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WS5 F1  C1  SING N N 1  
WS5 C1  C25 DOUB Y N 2  
WS5 C1  C2  SING Y N 3  
WS5 C25 C24 SING Y N 4  
WS5 C2  C3  DOUB Y N 5  
WS5 C24 C4  DOUB Y N 6  
WS5 C3  C4  SING Y N 7  
WS5 C4  C5  SING N N 8  
WS5 O4  S1  DOUB N N 9  
WS5 O1  S1  DOUB N N 10 
WS5 S1  C5  SING N N 11 
WS5 S1  N1  SING N N 12 
WS5 N1  C6  SING N N 13 
WS5 N1  C23 SING N N 14 
WS5 C6  C20 SING N N 15 
WS5 C6  C7  SING N N 16 
WS5 C23 C22 SING N N 17 
WS5 C20 C21 SING N N 18 
WS5 C22 C21 SING N N 19 
WS5 C7  N2  SING N N 20 
WS5 C7  O3  DOUB N N 21 
WS5 O2  C13 DOUB N N 22 
WS5 N2  C8  SING N N 23 
WS5 N4  C16 DOUB Y N 24 
WS5 N4  C17 SING Y N 25 
WS5 C16 C15 SING Y N 26 
WS5 C13 C8  SING N N 27 
WS5 C13 N3  SING N N 28 
WS5 C17 C18 DOUB Y N 29 
WS5 C8  C9  SING N N 30 
WS5 C9  C10 SING N N 31 
WS5 C15 C14 SING N N 32 
WS5 C15 C19 DOUB Y N 33 
WS5 C10 C11 SING N N 34 
WS5 C10 C12 SING N N 35 
WS5 N3  C14 SING N N 36 
WS5 C18 C19 SING Y N 37 
WS5 N3  H17 SING N N 38 
WS5 C5  H4  SING N N 39 
WS5 C5  H3  SING N N 40 
WS5 C6  H5  SING N N 41 
WS5 C8  H7  SING N N 42 
WS5 C10 H10 SING N N 43 
WS5 C17 H21 SING N N 44 
WS5 C20 H25 SING N N 45 
WS5 C20 H24 SING N N 46 
WS5 C21 H27 SING N N 47 
WS5 C21 H26 SING N N 48 
WS5 C22 H29 SING N N 49 
WS5 C22 H28 SING N N 50 
WS5 C24 H32 SING N N 51 
WS5 C11 H13 SING N N 52 
WS5 C11 H12 SING N N 53 
WS5 C11 H11 SING N N 54 
WS5 C12 H16 SING N N 55 
WS5 C12 H14 SING N N 56 
WS5 C12 H15 SING N N 57 
WS5 C14 H19 SING N N 58 
WS5 C14 H18 SING N N 59 
WS5 C16 H20 SING N N 60 
WS5 C18 H22 SING N N 61 
WS5 C19 H23 SING N N 62 
WS5 C2  H1  SING N N 63 
WS5 C23 H30 SING N N 64 
WS5 C23 H31 SING N N 65 
WS5 C25 H33 SING N N 66 
WS5 C3  H2  SING N N 67 
WS5 C9  H8  SING N N 68 
WS5 C9  H9  SING N N 69 
WS5 N2  H6  SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WS5 InChI            InChI                1.06  "InChI=1S/C25H33FN4O4S/c1-18(2)14-22(24(31)28-16-20-6-5-12-27-15-20)29-25(32)23-7-3-4-13-30(23)35(33,34)17-19-8-10-21(26)11-9-19/h5-6,8-12,15,18,22-23H,3-4,7,13-14,16-17H2,1-2H3,(H,28,31)(H,29,32)/t22-,23-/m0/s1" 
WS5 InChIKey         InChI                1.06  SOAYYWKJGVKGEN-GOTSBHOMSA-N                                                                                                                                                                                          
WS5 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@@H]1CCCCN1[S](=O)(=O)Cc2ccc(F)cc2)C(=O)NCc3cccnc3"                                                                                                                                             
WS5 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH]1CCCCN1[S](=O)(=O)Cc2ccc(F)cc2)C(=O)NCc3cccnc3"                                                                                                                                                
WS5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)NCc1cccnc1)NC(=O)[C@@H]2CCCCN2S(=O)(=O)Cc3ccc(cc3)F"                                                                                                                                              
WS5 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NCc1cccnc1)NC(=O)C2CCCCN2S(=O)(=O)Cc3ccc(cc3)F"                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           WS5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-1-[(4-fluorophenyl)methylsulfonyl]-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-(pyridin-3-ylmethylamino)pentan-2-yl]piperidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WS5 "Create component" 2023-05-17 PDBE 
WS5 "Initial release"  2024-06-12 RCSB 
# 
