data_DM6
#

_chem_comp.id                                   DM6
_chem_comp.name                                 "4'-EPIDOXORUBICIN"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C27 H30 N O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4'-EPIADRIAMYCIN"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       544.527
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DM6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1D54
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DM6  C1      C1    C  0  1  Y  N  N  -12.455  18.476   5.182   6.084  -0.803  -0.683  C1      DM6   1  
DM6  C2      C2    C  0  1  Y  N  N  -11.236  19.166   5.198   7.044   0.037  -0.142  C2      DM6   2  
DM6  C3      C3    C  0  1  Y  N  N  -10.062  18.558   5.108   6.680   1.219   0.469  C3      DM6   3  
DM6  C4      C4    C  0  1  Y  N  N   -9.992  17.168   4.949   5.340   1.586   0.550  C4      DM6   4  
DM6  C5      C5    C  0  1  N  N  N  -11.208  14.923   4.817   2.933   1.117   0.084  C5      DM6   5  
DM6  C6      C6    C  0  1  Y  N  N  -12.508  12.875   4.732   0.576   0.305   0.120  C6      DM6   6  
DM6  C7      C7    C  0  1  N  N  S  -13.668  10.642   4.811  -1.812  -0.375   0.235  C7      DM6   7  
DM6  C8      C8    C  0  1  N  N  N  -14.993  10.012   4.483  -2.780  -1.299  -0.500  C8      DM6   8  
DM6  C9      C9    C  0  1  N  N  S  -16.170  10.603   5.304  -2.305  -2.744  -0.314  C9      DM6   9  
DM6  C10     C10   C  0  1  N  N  N  -16.299  12.096   4.928  -1.013  -2.930  -1.108  C10     DM6  10  
DM6  C11     C11   C  0  1  Y  N  N  -14.932  14.240   4.907   1.319  -2.073  -1.110  C11     DM6  11  
DM6  C12     C12   C  0  1  N  N  N  -13.713  16.395   5.050   3.703  -1.342  -1.185  C12     DM6  12  
DM6  C13     C13   C  0  1  N  N  N  -17.501   9.899   4.907  -2.046  -3.011   1.147  C13     DM6  13  
DM6  C14     C14   C  0  1  N  N  N  -18.185   9.336   6.161  -3.178  -3.431   2.048  C14     DM6  14  
DM6  C15     C15   C  0  1  Y  N  N  -12.402  17.089   5.034   4.740  -0.456  -0.613  C15     DM6  15  
DM6  C16     C16   C  0  1  Y  N  N  -11.214  16.414   4.922   4.360   0.747   0.014  C16     DM6  16  
DM6  C17     C17   C  0  1  Y  N  N  -12.505  14.257   4.848   1.911   0.095  -0.211  C17     DM6  17  
DM6  C18     C18   C  0  1  Y  N  N  -13.705  14.935   4.949   2.289  -1.113  -0.834  C18     DM6  18  
DM6  C19     C19   C  0  1  Y  N  N  -14.940  12.811   4.822  -0.022  -1.846  -0.771  C19     DM6  19  
DM6  C20     C20   C  0  1  Y  N  N  -13.758  12.141   4.764  -0.388  -0.673  -0.161  C20     DM6  20  
DM6  C21     C21   C  0  1  N  N  N   -7.591  17.145   5.214   6.195   3.368   1.595  C21     DM6  21  
DM6  O4      O4    O  0  1  N  N  N   -8.857  16.470   4.901   4.986   2.749   1.152  O4      DM6  22  
DM6  O5      O5    O  0  1  N  N  N  -10.157  14.262   4.705   2.604   2.248   0.385  O5      DM6  23  
DM6  O6      O6    O  0  1  N  N  N  -11.387  12.127   4.727   0.204   1.464   0.719  O6      DM6  24  
DM6  O7      O7    O  0  1  N  N  N  -13.189  10.250   6.124  -2.116   0.982  -0.090  O7      DM6  25  
DM6  O9      O9    O  0  1  N  N  N  -16.055  10.533   6.727  -3.302  -3.646  -0.798  O9      DM6  26  
DM6  O11     O11   O  0  1  N  N  N  -16.128  14.873   4.880   1.674  -3.235  -1.712  O11     DM6  27  
DM6  O12     O12   O  0  1  N  N  N  -14.769  17.036   5.023   4.012  -2.248  -1.934  O12     DM6  28  
DM6  O13     O13   O  0  1  N  N  N  -17.924  10.311   3.822  -0.931  -2.887   1.595  O13     DM6  29  
DM6  O14     O14   O  0  1  N  N  N  -19.009   8.272   5.685  -2.684  -3.621   3.376  O14     DM6  30  
DM6  "C1'"   C1*   C  0  1  N  N  R  -12.292   9.154   6.071  -2.933   1.488   0.968  "C1'"   DM6  31  
DM6  "C2'"   C2*   C  0  1  N  N  N  -11.513   9.224   7.341  -2.992   3.015   0.879  "C2'"   DM6  32  
DM6  "C3'"   C3*   C  0  1  N  N  S  -12.410   8.930   8.564  -3.566   3.414  -0.485  "C3'"   DM6  33  
DM6  "C4'"   C4*   C  0  1  N  N  R  -13.158   7.641   8.363  -4.906   2.696  -0.682  "C4'"   DM6  34  
DM6  "C5'"   C5*   C  0  1  N  N  S  -13.912   7.661   7.061  -4.702   1.193  -0.476  "C5'"   DM6  35  
DM6  "C6'"   C6*   C  0  1  N  N  N  -14.663   6.349   6.738  -6.027   0.464  -0.702  "C6'"   DM6  36  
DM6  "O4'"   O4*   O  0  1  N  N  N  -13.929   7.310   9.490  -5.387   2.937  -2.006  "O4'"   DM6  37  
DM6  "O5'"   O5*   O  0  1  N  N  N  -13.010   7.907   5.960  -4.247   0.947   0.853  "O5'"   DM6  38  
DM6  "N3'"   N3*   N  1  1  N  N  N  -11.502   8.790   9.734  -3.771   4.868  -0.527  "N3'"   DM6  39  
DM6  H1      H1    H  0  1  N  N  N  -13.418  19.003   5.282   6.379  -1.726  -1.160  H1      DM6  40  
DM6  H2      H2    H  0  1  N  N  N  -11.197  20.264   5.287   8.088  -0.237  -0.198  H2      DM6  41  
DM6  H3      H3    H  0  1  N  N  N   -9.163  19.194   5.164   7.439   1.864   0.886  H3      DM6  42  
DM6  H7      H7    H  0  1  N  N  N  -12.948  10.278   4.040  -1.924  -0.521   1.310  H7      DM6  43  
DM6  H81     1H8   H  0  1  N  N  N  -15.201  10.073   3.389  -2.791  -1.049  -1.561  H81     DM6  44  
DM6  H82     2H8   H  0  1  N  N  N  -14.945   8.904   4.598  -3.782  -1.185  -0.086  H82     DM6  45  
DM6  H101    1H10  H  0  0  N  N  N  -16.887  12.220   3.989  -1.238  -2.892  -2.173  H101    DM6  46  
DM6  H102    2H10  H  0  0  N  N  N  -16.973  12.628   5.638  -0.580  -3.901  -0.867  H102    DM6  47  
DM6  H141    1H14  H  0  0  N  N  N  -17.475   9.032   6.965  -3.945  -2.656   2.054  H141    DM6  48  
DM6  H142    2H14  H  0  0  N  N  N  -18.734  10.100   6.757  -3.607  -4.364   1.683  H142    DM6  49  
DM6  H211    1H21  H  0  0  N  N  N   -6.641  16.561   5.173   5.960   4.312   2.088  H211    DM6  50  
DM6  H212    2H21  H  0  0  N  N  N   -7.489  18.040   4.556   6.705   2.709   2.297  H212    DM6  51  
DM6  H213    3H21  H  0  0  N  N  N   -7.677  17.621   6.218   6.842   3.557   0.738  H213    DM6  52  
DM6  HO6     HO6   H  0  1  N  N  N  -11.389  11.180   4.647   0.198   1.296   1.672  HO6     DM6  53  
DM6  HO9     HO9   H  0  1  N  N  N  -16.775  10.894   7.229  -2.952  -4.540  -0.678  HO9     DM6  54  
DM6  HO11    HO11  H  0  0  N  N  N  -16.954  14.405   4.851   1.892  -3.860  -1.006  HO11    DM6  55  
DM6  HO14    HO14  H  0  0  N  N  N  -19.432   7.923   6.460  -3.438  -3.889   3.919  HO14    DM6  56  
DM6  "H1'"   H1*   H  0  1  N  N  N  -11.624   9.202   5.179  -2.504   1.197   1.927  "H1'"   DM6  57  
DM6  "H2'1"  1H2*  H  0  0  N  N  N  -10.623   8.551   7.313  -3.633   3.401   1.672  "H2'1"  DM6  58  
DM6  "H2'2"  2H2*  H  0  0  N  N  N  -10.985  10.200   7.445  -1.988   3.425   0.987  "H2'2"  DM6  59  
DM6  "H3'"   H3*   H  0  1  N  N  N  -13.154   9.746   8.712  -2.874   3.119  -1.273  "H3'"   DM6  60  
DM6  "H4'"   H4*   H  0  1  N  N  N  -12.428   6.802   8.269  -5.630   3.068   0.043  "H4'"   DM6  61  
DM6  "H5'"   H5*   H  0  1  N  N  N  -14.664   8.474   7.185  -3.961   0.827  -1.186  "H5'"   DM6  62  
DM6  "H6'1"  1H6*  H  0  0  N  N  N  -15.221   6.363   5.773  -6.374   0.647  -1.719  "H6'1"  DM6  63  
DM6  "H6'2"  2H6*  H  0  0  N  N  N  -13.962   5.482   6.768  -5.883  -0.607  -0.555  "H6'2"  DM6  64  
DM6  "H6'3"  3H6*  H  0  0  N  N  N  -15.343   6.073   7.577  -6.770   0.831   0.006  "H6'3"  DM6  65  
DM6  "HO'4"  4HO*  H  0  0  N  N  N  -14.401   6.495   9.363  -6.229   2.468  -2.087  "HO'4"  DM6  66  
DM6  "HN'1"  1HN*  H  0  0  N  N  N  -12.094   8.595  10.541  -2.889   5.336  -0.384  "HN'1"  DM6  67  
DM6  "HN'2"  2HN*  H  0  0  N  N  N  -10.769   8.093   9.594  -4.149   5.128  -1.425  "HN'2"  DM6  68  
DM6  "HN'3"  3HN*  H  0  0  N  N  N  -10.889   9.594   9.867  -4.417   5.137   0.200  "HN'3"  DM6  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DM6  C1     C2      DOUB  Y  N   1  
DM6  C1     C15     SING  Y  N   2  
DM6  C1     H1      SING  N  N   3  
DM6  C2     C3      SING  Y  N   4  
DM6  C2     H2      SING  N  N   5  
DM6  C3     C4      DOUB  Y  N   6  
DM6  C3     H3      SING  N  N   7  
DM6  C4     C16     SING  Y  N   8  
DM6  C4     O4      SING  N  N   9  
DM6  C5     C16     SING  N  N  10  
DM6  C5     C17     SING  N  N  11  
DM6  C5     O5      DOUB  N  N  12  
DM6  C6     C17     DOUB  Y  N  13  
DM6  C6     C20     SING  Y  N  14  
DM6  C6     O6      SING  N  N  15  
DM6  C7     C8      SING  N  N  16  
DM6  C7     C20     SING  N  N  17  
DM6  C7     O7      SING  N  N  18  
DM6  C7     H7      SING  N  N  19  
DM6  C8     C9      SING  N  N  20  
DM6  C8     H81     SING  N  N  21  
DM6  C8     H82     SING  N  N  22  
DM6  C9     C10     SING  N  N  23  
DM6  C9     C13     SING  N  N  24  
DM6  C9     O9      SING  N  N  25  
DM6  C10    C19     SING  N  N  26  
DM6  C10    H101    SING  N  N  27  
DM6  C10    H102    SING  N  N  28  
DM6  C11    C18     DOUB  Y  N  29  
DM6  C11    C19     SING  Y  N  30  
DM6  C11    O11     SING  N  N  31  
DM6  C12    C15     SING  N  N  32  
DM6  C12    C18     SING  N  N  33  
DM6  C12    O12     DOUB  N  N  34  
DM6  C13    C14     SING  N  N  35  
DM6  C13    O13     DOUB  N  N  36  
DM6  C14    O14     SING  N  N  37  
DM6  C14    H141    SING  N  N  38  
DM6  C14    H142    SING  N  N  39  
DM6  C15    C16     DOUB  Y  N  40  
DM6  C17    C18     SING  Y  N  41  
DM6  C19    C20     DOUB  Y  N  42  
DM6  C21    O4      SING  N  N  43  
DM6  C21    H211    SING  N  N  44  
DM6  C21    H212    SING  N  N  45  
DM6  C21    H213    SING  N  N  46  
DM6  O6     HO6     SING  N  N  47  
DM6  O7     "C1'"   SING  N  N  48  
DM6  O9     HO9     SING  N  N  49  
DM6  O11    HO11    SING  N  N  50  
DM6  O14    HO14    SING  N  N  51  
DM6  "C1'"  "C2'"   SING  N  N  52  
DM6  "C1'"  "O5'"   SING  N  N  53  
DM6  "C1'"  "H1'"   SING  N  N  54  
DM6  "C2'"  "C3'"   SING  N  N  55  
DM6  "C2'"  "H2'1"  SING  N  N  56  
DM6  "C2'"  "H2'2"  SING  N  N  57  
DM6  "C3'"  "C4'"   SING  N  N  58  
DM6  "C3'"  "N3'"   SING  N  N  59  
DM6  "C3'"  "H3'"   SING  N  N  60  
DM6  "C4'"  "C5'"   SING  N  N  61  
DM6  "C4'"  "O4'"   SING  N  N  62  
DM6  "C4'"  "H4'"   SING  N  N  63  
DM6  "C5'"  "C6'"   SING  N  N  64  
DM6  "C5'"  "O5'"   SING  N  N  65  
DM6  "C5'"  "H5'"   SING  N  N  66  
DM6  "C6'"  "H6'1"  SING  N  N  67  
DM6  "C6'"  "H6'2"  SING  N  N  68  
DM6  "C6'"  "H6'3"  SING  N  N  69  
DM6  "O4'"  "HO'4"  SING  N  N  70  
DM6  "N3'"  "HN'1"  SING  N  N  71  
DM6  "N3'"  "HN'2"  SING  N  N  72  
DM6  "N3'"  "HN'3"  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DM6  SMILES            ACDLabs               10.04  "O=C2c1c(O)c5c(c(O)c1C(=O)c3cccc(OC)c23)CC(O)(C(=O)CO)CC5OC4OC(C(O)C(C4)[NH3+])C"  
DM6  SMILES_CANONICAL  CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@H]([NH3+])[C@@H](O)[C@H](C)O5)c4c(O)c3C(=O)c12)C(=O)CO"  
DM6  SMILES            CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH]([NH3+])[CH](O)[CH](C)O5)c4c(O)c3C(=O)c12)C(=O)CO"  
DM6  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)[NH3+])O"  
DM6  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)[NH3+])O"  
DM6  InChI             InChI                 1.03   "InChI=1S/C27H29NO11/c1-10-22(31)13(28)6-17(38-10)39-15-8-27(36,16(30)9-29)7-12-19(15)26(35)21-20(24(12)33)23(32)11-4-3-5-14(37-2)18(11)25(21)34/h3-5,10,13,15,17,22,29,31,33,35-36H,6-9,28H2,1-2H3/p+1/t10-,13-,15-,17-,22-,27-/m0/s1"  
DM6  InChIKey          InChI                 1.03   AOJJSUZBOXZQNB-VTZDEGQISA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DM6  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-ammonio-2,3,6-trideoxy-alpha-L-arabino-hexopyranoside"  
DM6  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2S,3R,4S,6R)-3-hydroxy-2-methyl-6-[[(1S,3S)-3,5,12-trihydroxy-3-(2-hydroxyethanoyl)-10-methoxy-6,11-dioxo-2,4-dihydro-1H-tetracen-1-yl]oxy]oxan-4-yl]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DM6  "Create component"   1999-07-08  RCSB  
DM6  "Modify descriptor"  2011-06-04  RCSB  
DM6  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DM6
_pdbx_chem_comp_synonyms.name        "4'-EPIADRIAMYCIN"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
