data_HT6
#

_chem_comp.id                                   HT6
_chem_comp.name                                 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(hexylsulfanyl)methyl]pyrrolidin-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H29 N5 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Hexylthio-DADMe-Immucillin-A
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       363.521
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HT6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6AYS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HT6  O3A  O1   O  0  1  N  N  N  -27.051  24.372   3.526    0.710   2.921   1.634  O3A  HT6   1  
HT6  C3A  C1   C  0  1  N  N  R  -27.000  24.490   4.959    0.175   2.382   0.423  C3A  HT6   2  
HT6  C4A  C2   C  0  1  N  N  S  -25.901  25.428   5.405   -0.753   1.189   0.731  C4A  HT6   3  
HT6  C5A  C3   C  0  1  N  N  N  -26.162  26.019   6.800   -2.154   1.447   0.171  C5A  HT6   4  
HT6  S5A  S1   S  0  1  N  N  N  -27.390  27.286   6.799   -3.262   0.101   0.672  S5A  HT6   5  
HT6  C20  C4   C  0  1  N  N  N  -26.475  28.672   6.188   -4.845   0.577  -0.074  C20  HT6   6  
HT6  C21  C5   C  0  1  N  N  N  -27.254  29.974   6.264   -5.904  -0.475   0.262  C21  HT6   7  
HT6  C22  C6   C  0  1  N  N  N  -26.285  31.138   6.104   -7.240  -0.073  -0.367  C22  HT6   8  
HT6  C23  C7   C  0  1  N  N  N  -27.017  32.476   6.086   -8.299  -1.125  -0.030  C23  HT6   9  
HT6  C24  C8   C  0  1  N  N  N  -26.026  33.633   6.208   -9.634  -0.723  -0.660  C24  HT6  10  
HT6  C25  C9   C  0  1  N  N  N  -26.731  34.976   6.207  -10.693  -1.775  -0.323  C25  HT6  11  
HT6  C2A  C10  C  0  1  N  N  N  -26.611  23.181   5.577    1.306   1.796  -0.449  C2A  HT6  12  
HT6  N1A  N1   N  0  1  N  N  N  -25.157  23.164   5.348    1.329   0.350  -0.110  N1A  HT6  13  
HT6  C1A  C11  C  0  1  N  N  N  -24.651  24.554   5.404   -0.105  -0.018   0.019  C1A  HT6  14  
HT6  C10  C12  C  0  1  N  N  N  -24.462  22.190   6.184    1.979  -0.429  -1.172  C10  HT6  15  
HT6  C9   C13  C  0  1  Y  N  N  -24.204  22.528   7.634    3.469  -0.214  -1.112  C9   HT6  16  
HT6  C4   C14  C  0  1  Y  N  N  -25.122  22.489   8.774    4.405  -0.867  -0.203  C4   HT6  17  
HT6  N3   N2   N  0  1  Y  N  N  -26.442  22.196   8.861    4.293  -1.771   0.775  N3   HT6  18  
HT6  C2   C15  C  0  1  Y  N  N  -27.043  22.241  10.039    5.358  -2.174   1.433  C2   HT6  19  
HT6  N1   N3   N  0  1  Y  N  N  -26.403  22.596  11.175    6.569  -1.717   1.168  N1   HT6  20  
HT6  C6   C16  C  0  1  Y  N  N  -25.090  22.879  11.207    6.774  -0.816   0.212  C6   HT6  21  
HT6  N6   N4   N  0  1  N  N  N  -24.475  23.212  12.373    8.050  -0.345  -0.054  N6   HT6  22  
HT6  C5   C17  C  0  1  Y  N  N  -24.343  22.855   9.942    5.675  -0.353  -0.519  C5   HT6  23  
HT6  N7   N5   N  0  1  Y  N  N  -23.087  23.089   9.538    5.508   0.545  -1.547  N7   HT6  24  
HT6  C8   C18  C  0  1  Y  N  N  -22.978  22.889   8.187    4.190   0.613  -1.893  C8   HT6  25  
HT6  H1   H1   H  0  1  N  N  N  -27.750  23.777   3.281    1.301   3.674   1.502  H1   HT6  26  
HT6  H2   H2   H  0  1  N  N  N  -27.967  24.826   5.362   -0.368   3.152  -0.125  H2   HT6  27  
HT6  H3   H3   H  0  1  N  N  N  -25.785  26.243   4.675   -0.802   1.015   1.806  H3   HT6  28  
HT6  H4   H4   H  0  1  N  N  N  -26.495  25.209   7.466   -2.532   2.392   0.559  H4   HT6  29  
HT6  H5   H5   H  0  1  N  N  N  -25.222  26.444   7.181   -2.107   1.493  -0.917  H5   HT6  30  
HT6  H6   H6   H  0  1  N  N  N  -26.210  28.482   5.137   -5.156   1.545   0.321  H6   HT6  31  
HT6  H7   H7   H  0  1  N  N  N  -25.557  28.777   6.784   -4.732   0.645  -1.156  H7   HT6  32  
HT6  H8   H8   H  0  1  N  N  N  -27.760  30.046   7.238   -5.594  -1.442  -0.132  H8   HT6  33  
HT6  H9   H9   H  0  1  N  N  N  -28.003  30.004   5.459   -6.018  -0.543   1.344  H9   HT6  34  
HT6  H10  H10  H  0  1  N  N  N  -25.736  31.018   5.159   -7.551   0.895   0.028  H10  HT6  35  
HT6  H11  H11  H  0  1  N  N  N  -25.575  31.130   6.944   -7.126  -0.005  -1.448  H11  HT6  36  
HT6  H12  H12  H  0  1  N  N  N  -27.571  32.572   5.140   -7.988  -2.092  -0.425  H12  HT6  37  
HT6  H13  H13  H  0  1  N  N  N  -27.722  32.514   6.929   -8.413  -1.193   1.051  H13  HT6  38  
HT6  H14  H14  H  0  1  N  N  N  -25.465  33.525   7.148   -9.945   0.245  -0.265  H14  HT6  39  
HT6  H15  H15  H  0  1  N  N  N  -25.328  33.596   5.359   -9.521  -0.655  -1.741  H15  HT6  40  
HT6  H16  H16  H  0  1  N  N  N  -25.987  35.781   6.296  -11.645  -1.488  -0.771  H16  HT6  41  
HT6  H17  H17  H  0  1  N  N  N  -27.290  35.096   5.267  -10.383  -2.742  -0.718  H17  HT6  42  
HT6  H18  H18  H  0  1  N  N  N  -27.428  35.025   7.057  -10.807  -1.843   0.758  H18  HT6  43  
HT6  H19  H19  H  0  1  N  N  N  -26.848  23.158   6.651    1.081   1.935  -1.507  H19  HT6  44  
HT6  H20  H20  H  0  1  N  N  N  -27.106  22.337   5.074    2.259   2.263  -0.199  H20  HT6  45  
HT6  H22  H22  H  0  1  N  N  N  -24.065  24.716   6.321   -0.213  -0.919   0.623  H22  HT6  46  
HT6  H23  H23  H  0  1  N  N  N  -24.026  24.774   4.526   -0.550  -0.162  -0.965  H23  HT6  47  
HT6  H24  H24  H  0  1  N  N  N  -25.059  21.266   6.169    1.759  -1.488  -1.032  H24  HT6  48  
HT6  H25  H25  H  0  1  N  N  N  -23.484  22.002   5.717    1.603  -0.105  -2.142  H25  HT6  49  
HT6  H26  H26  H  0  1  N  N  N  -28.090  21.983  10.095    5.238  -2.905   2.219  H26  HT6  50  
HT6  H27  H27  H  0  1  N  N  N  -25.142  23.201  13.118    8.804  -0.673   0.459  H27  HT6  51  
HT6  H28  H28  H  0  1  N  N  N  -23.749  22.553  12.567    8.188   0.312  -0.754  H28  HT6  52  
HT6  H29  H29  H  0  1  N  N  N  -22.337  23.369  10.137    6.221   1.052  -1.965  H29  HT6  53  
HT6  H30  H30  H  0  1  N  N  N  -22.062  22.997   7.625    3.785   1.238  -2.675  H30  HT6  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HT6  O3A  C3A  SING  N  N   1  
HT6  C3A  C4A  SING  N  N   2  
HT6  C3A  C2A  SING  N  N   3  
HT6  N1A  C1A  SING  N  N   4  
HT6  N1A  C2A  SING  N  N   5  
HT6  N1A  C10  SING  N  N   6  
HT6  C1A  C4A  SING  N  N   7  
HT6  C4A  C5A  SING  N  N   8  
HT6  C23  C22  SING  N  N   9  
HT6  C23  C24  SING  N  N  10  
HT6  C22  C21  SING  N  N  11  
HT6  C10  C9   SING  N  N  12  
HT6  C20  C21  SING  N  N  13  
HT6  C20  S5A  SING  N  N  14  
HT6  C25  C24  SING  N  N  15  
HT6  S5A  C5A  SING  N  N  16  
HT6  C9   C8   DOUB  Y  N  17  
HT6  C9   C4   SING  Y  N  18  
HT6  C8   N7   SING  Y  N  19  
HT6  C4   N3   DOUB  Y  N  20  
HT6  C4   C5   SING  Y  N  21  
HT6  N3   C2   SING  Y  N  22  
HT6  N7   C5   SING  Y  N  23  
HT6  C5   C6   DOUB  Y  N  24  
HT6  C2   N1   DOUB  Y  N  25  
HT6  N1   C6   SING  Y  N  26  
HT6  C6   N6   SING  N  N  27  
HT6  O3A  H1   SING  N  N  28  
HT6  C3A  H2   SING  N  N  29  
HT6  C4A  H3   SING  N  N  30  
HT6  C5A  H4   SING  N  N  31  
HT6  C5A  H5   SING  N  N  32  
HT6  C20  H6   SING  N  N  33  
HT6  C20  H7   SING  N  N  34  
HT6  C21  H8   SING  N  N  35  
HT6  C21  H9   SING  N  N  36  
HT6  C22  H10  SING  N  N  37  
HT6  C22  H11  SING  N  N  38  
HT6  C23  H12  SING  N  N  39  
HT6  C23  H13  SING  N  N  40  
HT6  C24  H14  SING  N  N  41  
HT6  C24  H15  SING  N  N  42  
HT6  C25  H16  SING  N  N  43  
HT6  C25  H17  SING  N  N  44  
HT6  C25  H18  SING  N  N  45  
HT6  C2A  H19  SING  N  N  46  
HT6  C2A  H20  SING  N  N  47  
HT6  C1A  H22  SING  N  N  48  
HT6  C1A  H23  SING  N  N  49  
HT6  C10  H24  SING  N  N  50  
HT6  C10  H25  SING  N  N  51  
HT6  C2   H26  SING  N  N  52  
HT6  N6   H27  SING  N  N  53  
HT6  N6   H28  SING  N  N  54  
HT6  N7   H29  SING  N  N  55  
HT6  C8   H30  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HT6  SMILES            ACDLabs               12.01  "OC1C(CSCCCCCC)CN(C1)Cc2cnc3c2ncnc3N"  
HT6  InChI             InChI                 1.03   "InChI=1S/C18H29N5OS/c1-2-3-4-5-6-25-11-14-9-23(10-15(14)24)8-13-7-20-17-16(13)21-12-22-18(17)19/h7,12,14-15,20,24H,2-6,8-11H2,1H3,(H2,19,21,22)/t14-,15+/m1/s1"  
HT6  InChIKey          InChI                 1.03   HXJWTLYUDABXFG-CABCVRRESA-N  
HT6  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23"  
HT6  SMILES            CACTVS                3.385  "CCCCCCSC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23"  
HT6  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCCCCCSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c2ncnc3N"  
HT6  SMILES            "OpenEye OEToolkits"  2.0.6  "CCCCCCSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HT6  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(hexylsulfanyl)methyl]pyrrolidin-3-ol"  
HT6  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(3~{R},4~{S})-1-[(4-azanyl-5~{H}-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-(hexylsulfanylmethyl)pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HT6  "Create component"  2017-09-11  RCSB  
HT6  "Initial release"   2018-09-12  RCSB  
HT6  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     HT6
_pdbx_chem_comp_synonyms.name        Hexylthio-DADMe-Immucillin-A
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
