data_JB6
# 
_chem_comp.id                                    JB6 
_chem_comp.name                                  
"(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[2-[[(2S)-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-2-oxidanyl-propoxy]-sulfanyl-phosphoryl]oxyethyl]oxolane-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H34 N10 O13 P2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-04-30 
_chem_comp.pdbx_modified_date                    2016-02-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        796.663 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JB6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZKL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JB6 N46 N1  N 0 1 N N N 36.371 -8.123 16.730 -11.854 4.755  2.735  N46 JB6 1  
JB6 C43 C1  C 0 1 Y N N 36.322 -7.767 18.034 -11.960 3.648  1.911  C43 JB6 2  
JB6 N44 N2  N 0 1 Y N N 37.454 -7.679 18.772 -13.148 3.126  1.624  N44 JB6 3  
JB6 C47 C2  C 0 1 Y N N 37.390 -7.329 20.064 -13.259 2.070  0.839  C47 JB6 4  
JB6 N41 N3  N 0 1 Y N N 36.212 -7.052 20.644 -12.215 1.478  0.299  N41 JB6 5  
JB6 C38 C3  C 0 1 Y N N 35.053 -7.134 19.939 -10.986 1.929  0.530  C38 JB6 6  
JB6 C39 C4  C 0 1 Y N N 35.095 -7.489 18.612 -10.816 3.054  1.354  C39 JB6 7  
JB6 N40 N4  N 0 1 Y N N 33.823 -7.480 18.154 -9.486  3.305  1.416  N40 JB6 8  
JB6 C37 C5  C 0 1 Y N N 33.010 -7.127 19.180 -8.845  2.431  0.696  C37 JB6 9  
JB6 N36 N5  N 0 1 Y N N 33.771 -6.921 20.259 -9.727  1.555  0.135  N36 JB6 10 
JB6 C32 C6  C 0 1 N N R 33.345 -6.495 21.611 -9.391  0.430  -0.742 C32 JB6 11 
JB6 O33 O1  O 0 1 N N N 32.691 -7.502 22.379 -8.033  -0.001 -0.509 O33 JB6 12 
JB6 C31 C7  C 0 1 N N R 32.377 -5.319 21.599 -9.417  0.875  -2.221 C31 JB6 13 
JB6 O35 O2  O 0 1 N N N 33.072 -4.078 21.408 -10.656 0.512  -2.832 O35 JB6 14 
JB6 C30 C8  C 0 1 N N S 31.668 -5.424 22.947 -8.247  0.099  -2.866 C30 JB6 15 
JB6 O34 O3  O 0 1 N N N 32.124 -4.445 23.895 -8.729  -0.768 -3.896 O34 JB6 16 
JB6 C29 C9  C 0 1 N N R 31.961 -6.844 23.428 -7.654  -0.723 -1.701 C29 JB6 17 
JB6 C28 C10 C 0 1 N N N 30.705 -7.627 23.777 -6.130  -0.792 -1.819 C28 JB6 18 
JB6 C4  C11 C 0 1 N N N 30.207 -8.384 22.560 -5.568  -1.648 -0.682 C4  JB6 19 
JB6 O10 O4  O 0 1 N N N 29.952 -7.462 21.501 -4.145  -1.713 -0.793 O10 JB6 20 
JB6 P6  P1  P 0 1 N N R 28.472 -6.864 21.380 -3.221  -2.532 0.240  P6  JB6 21 
JB6 S8  S1  S 0 1 N N N 27.696 -6.539 23.284 -3.652  -4.602 0.086  S8  JB6 22 
JB6 O9  O5  O 0 1 N N N 27.703 -7.823 20.575 -3.497  -2.072 1.620  O9  JB6 23 
JB6 O4  O6  O 0 1 N N N 28.593 -5.484 20.561 -1.670  -2.279 -0.110 O4  JB6 24 
JB6 C2  C12 C 0 1 N N N 28.336 -5.511 19.163 -0.599  -2.785 0.690  C2  JB6 25 
JB6 C1  C13 C 0 1 N N S 29.428 -6.333 18.496 0.738   -2.363 0.078  C1  JB6 26 
JB6 O1  O7  O 0 1 N N N 30.111 -5.508 17.548 0.894   -2.985 -1.200 O1  JB6 27 
JB6 C3  C14 C 0 1 N N N 28.846 -7.562 17.806 1.880   -2.797 0.998  C3  JB6 28 
JB6 O5  O8  O 0 1 N N N 28.195 -7.213 16.590 3.119   -2.303 0.486  O5  JB6 29 
JB6 P7  P2  P 0 1 N N S 26.664 -6.711 16.661 4.535   -2.571 1.205  P7  JB6 30 
JB6 S13 S2  S 0 1 N N N 25.294 -8.259 16.434 4.560   -1.611 3.095  S13 JB6 31 
JB6 O12 O9  O 0 1 N N N 26.502 -6.014 17.953 4.727   -4.027 1.388  O12 JB6 32 
JB6 O14 O10 O 0 1 N N N 26.491 -5.650 15.470 5.721   -1.984 0.289  O14 JB6 33 
JB6 C5  C15 C 0 1 N N N 25.408 -5.733 14.550 7.105   -2.156 0.603  C5  JB6 34 
JB6 C6  C16 C 0 1 N N R 25.917 -6.113 13.150 7.960   -1.478 -0.470 C6  JB6 35 
JB6 O11 O11 O 0 1 N N N 27.146 -5.437 12.792 7.773   -0.054 -0.415 O11 JB6 36 
JB6 C7  C17 C 0 1 N N S 26.186 -7.613 13.062 9.452   -1.758 -0.205 C7  JB6 37 
JB6 O15 O12 O 0 1 N N N 25.577 -8.148 11.877 10.035  -2.449 -1.312 O15 JB6 38 
JB6 C8  C18 C 0 1 N N R 27.701 -7.714 13.028 10.080  -0.351 -0.049 C8  JB6 39 
JB6 O17 O13 O 0 1 N N N 28.144 -8.875 12.320 11.348  -0.284 -0.705 O17 JB6 40 
JB6 C9  C19 C 0 1 N N R 28.137 -6.396 12.379 9.036   0.551  -0.764 C9  JB6 41 
JB6 N18 N6  N 0 1 Y N N 29.529 -6.049 12.778 9.107   1.925  -0.261 N18 JB6 42 
JB6 C19 C20 C 0 1 Y N N 29.978 -5.910 14.034 8.397   2.440  0.783  C19 JB6 43 
JB6 N22 N7  N 0 1 Y N N 31.295 -5.620 13.988 8.707   3.691  0.957  N22 JB6 44 
JB6 C21 C21 C 0 1 Y N N 31.668 -5.590 12.691 9.633   4.059  0.040  C21 JB6 45 
JB6 C20 C22 C 0 1 Y N N 30.550 -5.864 11.934 9.905   2.929  -0.750 C20 JB6 46 
JB6 N25 N8  N 0 1 Y N N 30.666 -5.899 10.584 10.792  3.027  -1.735 N25 JB6 47 
JB6 C26 C23 C 0 1 Y N N 31.845 -5.658 9.981  11.410  4.165  -1.971 C26 JB6 48 
JB6 N24 N9  N 0 1 Y N N 32.947 -5.381 10.700 11.187  5.253  -1.256 N24 JB6 49 
JB6 C23 C24 C 0 1 Y N N 32.879 -5.346 12.049 10.321  5.250  -0.249 C23 JB6 50 
JB6 N27 N10 N 0 1 N N N 33.981 -5.073 12.780 10.094  6.396  0.494  N27 JB6 51 
JB6 H1  H1  H 0 1 N N N 37.321 -8.287 16.464 -10.982 5.130  2.934  H1  JB6 52 
JB6 H2  H2  H 0 1 N N N 35.837 -8.957 16.592 -12.652 5.159  3.110  H2  JB6 53 
JB6 H3  H3  H 0 1 N N N 38.298 -7.269 20.646 -14.244 1.678  0.632  H3  JB6 54 
JB6 H4  H4  H 0 1 N N N 31.935 -7.029 19.133 -7.774  2.398  0.569  H4  JB6 55 
JB6 H5  H5  H 0 1 N N N 34.243 -6.171 22.157 -10.085 -0.396 -0.580 H5  JB6 56 
JB6 H6  H6  H 0 1 N N N 31.641 -5.470 20.796 -9.251  1.949  -2.299 H6  JB6 57 
JB6 H7  H7  H 0 1 N N N 32.448 -3.362 21.404 -10.726 0.768  -3.762 H7  JB6 58 
JB6 H8  H8  H 0 1 N N N 30.585 -5.319 22.788 -7.503  0.789  -3.264 H8  JB6 59 
JB6 H9  H9  H 0 1 N N N 31.654 -4.553 24.713 -9.165  -0.307 -4.625 H9  JB6 60 
JB6 H10 H10 H 0 1 N N N 32.590 -6.780 24.328 -8.080  -1.727 -1.688 H10 JB6 61 
JB6 H11 H11 H 0 1 N N N 29.924 -6.930 24.116 -5.860  -1.238 -2.777 H11 JB6 62 
JB6 H12 H12 H 0 1 N N N 30.934 -8.342 24.581 -5.714  0.213  -1.757 H12 JB6 63 
JB6 H13 H13 H 0 1 N N N 29.279 -8.917 22.814 -5.838  -1.203 0.275  H13 JB6 64 
JB6 H14 H14 H 0 1 N N N 30.971 -9.108 22.240 -5.983  -2.654 -0.745 H14 JB6 65 
JB6 H15 H15 H 0 1 N N N 26.655 -7.317 23.288 -3.360  -4.876 -1.198 H15 JB6 66 
JB6 H16 H16 H 0 1 N N N 28.344 -4.486 18.763 -0.679  -2.383 1.700  H16 JB6 67 
JB6 H17 H17 H 0 1 N N N 27.355 -5.971 18.973 -0.655  -3.873 0.726  H17 JB6 68 
JB6 H18 H18 H 0 1 N N N 30.133 -6.670 19.270 0.758   -1.280 -0.041 H18 JB6 69 
JB6 H19 H19 H 0 1 N N N 30.469 -4.747 17.990 0.885   -3.951 -1.171 H19 JB6 70 
JB6 H20 H20 H 0 1 N N N 28.118 -8.039 18.478 1.714   -2.395 1.998  H20 JB6 71 
JB6 H21 H21 H 0 1 N N N 29.660 -8.269 17.587 1.915   -3.885 1.046  H21 JB6 72 
JB6 H22 H22 H 0 1 N N N 24.627 -8.195 17.548 4.378   -0.316 2.780  H22 JB6 73 
JB6 H23 H23 H 0 1 N N N 24.902 -4.758 14.498 7.316   -1.708 1.573  H23 JB6 74 
JB6 H24 H24 H 0 1 N N N 24.697 -6.498 14.896 7.340   -3.220 0.635  H24 JB6 75 
JB6 H25 H25 H 0 1 N N N 25.135 -5.859 12.420 7.682   -1.850 -1.456 H25 JB6 76 
JB6 H26 H26 H 0 1 N N N 25.800 -8.112 13.963 9.575   -2.334 0.711  H26 JB6 77 
JB6 H27 H27 H 0 1 N N N 24.633 -8.065 11.940 10.974  -2.651 -1.199 H27 JB6 78 
JB6 H28 H28 H 0 1 N N N 28.077 -7.738 14.061 10.172  -0.081 1.002  H28 JB6 79 
JB6 H29 H29 H 0 1 N N N 27.843 -9.655 12.771 12.007  -0.897 -0.350 H29 JB6 80 
JB6 H30 H30 H 0 1 N N N 28.099 -6.518 11.286 9.186   0.531  -1.844 H30 JB6 81 
JB6 H31 H31 H 0 1 N N N 29.385 -6.013 14.931 7.683   1.890  1.377  H31 JB6 82 
JB6 H32 H32 H 0 1 N N N 31.907 -5.688 8.903  12.125  4.211  -2.779 H32 JB6 83 
JB6 H33 H33 H 0 1 N N N 34.758 -4.922 12.169 10.571  7.214  0.281  H33 JB6 84 
JB6 H34 H34 H 0 1 N N N 33.823 -4.251 13.327 9.459   6.381  1.227  H34 JB6 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JB6 C26 N25 DOUB Y N 1  
JB6 C26 N24 SING Y N 2  
JB6 N25 C20 SING Y N 3  
JB6 N24 C23 DOUB Y N 4  
JB6 O15 C7  SING N N 5  
JB6 C20 C21 DOUB Y N 6  
JB6 C20 N18 SING Y N 7  
JB6 C23 C21 SING Y N 8  
JB6 C23 N27 SING N N 9  
JB6 O17 C8  SING N N 10 
JB6 C9  N18 SING N N 11 
JB6 C9  O11 SING N N 12 
JB6 C9  C8  SING N N 13 
JB6 C21 N22 SING Y N 14 
JB6 N18 C19 SING Y N 15 
JB6 O11 C6  SING N N 16 
JB6 C8  C7  SING N N 17 
JB6 C7  C6  SING N N 18 
JB6 C6  C5  SING N N 19 
JB6 N22 C19 DOUB Y N 20 
JB6 C5  O14 SING N N 21 
JB6 O14 P7  SING N N 22 
JB6 S13 P7  SING N N 23 
JB6 O5  P7  SING N N 24 
JB6 O5  C3  SING N N 25 
JB6 P7  O12 DOUB N N 26 
JB6 N46 C43 SING N N 27 
JB6 O1  C1  SING N N 28 
JB6 C3  C1  SING N N 29 
JB6 C43 C39 DOUB Y N 30 
JB6 C43 N44 SING Y N 31 
JB6 N40 C39 SING Y N 32 
JB6 N40 C37 DOUB Y N 33 
JB6 C1  C2  SING N N 34 
JB6 C39 C38 SING Y N 35 
JB6 N44 C47 DOUB Y N 36 
JB6 C2  O4  SING N N 37 
JB6 C37 N36 SING Y N 38 
JB6 C38 N36 SING Y N 39 
JB6 C38 N41 DOUB Y N 40 
JB6 C47 N41 SING Y N 41 
JB6 N36 C32 SING N N 42 
JB6 O4  P6  SING N N 43 
JB6 O9  P6  DOUB N N 44 
JB6 P6  O10 SING N N 45 
JB6 P6  S8  SING N N 46 
JB6 O35 C31 SING N N 47 
JB6 O10 C4  SING N N 48 
JB6 C31 C32 SING N N 49 
JB6 C31 C30 SING N N 50 
JB6 C32 O33 SING N N 51 
JB6 O33 C29 SING N N 52 
JB6 C4  C28 SING N N 53 
JB6 C30 C29 SING N N 54 
JB6 C30 O34 SING N N 55 
JB6 C29 C28 SING N N 56 
JB6 N46 H1  SING N N 57 
JB6 N46 H2  SING N N 58 
JB6 C47 H3  SING N N 59 
JB6 C37 H4  SING N N 60 
JB6 C32 H5  SING N N 61 
JB6 C31 H6  SING N N 62 
JB6 O35 H7  SING N N 63 
JB6 C30 H8  SING N N 64 
JB6 O34 H9  SING N N 65 
JB6 C29 H10 SING N N 66 
JB6 C28 H11 SING N N 67 
JB6 C28 H12 SING N N 68 
JB6 C4  H13 SING N N 69 
JB6 C4  H14 SING N N 70 
JB6 S8  H15 SING N N 71 
JB6 C2  H16 SING N N 72 
JB6 C2  H17 SING N N 73 
JB6 C1  H18 SING N N 74 
JB6 O1  H19 SING N N 75 
JB6 C3  H20 SING N N 76 
JB6 C3  H21 SING N N 77 
JB6 S13 H22 SING N N 78 
JB6 C5  H23 SING N N 79 
JB6 C5  H24 SING N N 80 
JB6 C6  H25 SING N N 81 
JB6 C7  H26 SING N N 82 
JB6 O15 H27 SING N N 83 
JB6 C8  H28 SING N N 84 
JB6 O17 H29 SING N N 85 
JB6 C9  H30 SING N N 86 
JB6 C19 H31 SING N N 87 
JB6 C26 H32 SING N N 88 
JB6 N27 H33 SING N N 89 
JB6 N27 H34 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JB6 InChI            InChI                1.03  
;InChI=1S/C24H34N10O13P2S2/c25-19-13-21(29-6-27-19)33(8-31-13)23-17(38)15(36)11(46-23)1-2-42-48(40,50)43-3-10(35)4-44-49(41,51)45-5-12-16(37)18(39)24(47-12)34-9-32-14-20(26)28-7-30-22(14)34/h6-12,15-18,23-24,35-39H,1-5H2,(H,40,50)(H,41,51)(H2,25,27,29)(H2,26,28,30)/t10-,11+,12+,15+,16+,17+,18+,23+,24+,48+,49-/m0/s1
;
JB6 InChIKey         InChI                1.03  OABPMBSLNAAXBR-CZUYOEIMSA-N 
JB6 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CCO[P@](S)(=O)OC[C@H](O)CO[P@@](S)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" 
JB6 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CCO[P](S)(=O)OC[CH](O)CO[P](S)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" 
JB6 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CCO[P@](=O)(OC[C@@H](CO[P@@](=O)(OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)S)O)S)O)O)N" 
JB6 SMILES           "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CCOP(=O)(OCC(COP(=O)(OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)S)O)S)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JB6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[2-[[(2S)-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-2-oxidanyl-propoxy]-sulfanyl-phosphoryl]oxyethyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JB6 "Create component" 2015-04-30 EBI  
JB6 "Initial release"  2016-03-02 RCSB 
# 
