data_LL6
# 
_chem_comp.id                                    LL6 
_chem_comp.name                                  "(2~{S})-2-[[(2~{S})-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)-3-phenyl-propanoyl]amino]propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H20 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-06 
_chem_comp.pdbx_modified_date                    2023-04-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        352.384 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LL6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AAK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LL6 C1  C1  C 0 1 N N S -31.803 97.979  -11.088 -4.003 1.074  -0.186 C1  LL6 1  
LL6 C2  C2  C 0 1 N N N -30.432 96.557  -12.518 -1.616 0.598  -0.303 C2  LL6 2  
LL6 C3  C3  C 0 1 N N S -29.153 95.730  -12.633 -0.465 -0.358 -0.486 C3  LL6 3  
LL6 C4  C4  C 0 1 N N N -28.262 96.129  -13.820 -0.524 -1.440 0.594  C4  LL6 4  
LL6 C5  C5  C 0 1 Y N N -28.009 97.612  -13.932 0.552  -2.464 0.339  C5  LL6 5  
LL6 C6  C6  C 0 1 Y N N -28.287 98.291  -15.112 0.286  -3.562 -0.457 C6  LL6 6  
LL6 C7  C7  C 0 1 Y N N -28.047 99.650  -15.220 1.273  -4.502 -0.690 C7  LL6 7  
LL6 N1  N1  N 0 1 N N N -29.456 94.310  -12.628 0.799  0.373  -0.376 N1  LL6 8  
LL6 C8  C8  C 0 1 Y N N -27.529 100.348 -14.151 2.526  -4.342 -0.128 C8  LL6 9  
LL6 C10 C9  C 0 1 Y N N -27.477 98.325  -12.867 1.806  -2.302 0.897  C10 LL6 10 
LL6 O2  O1  O 0 1 N N N -32.777 100.030 -11.828 -5.142 -0.873 0.493  O2  LL6 11 
LL6 C19 C10 C 0 1 N N N -31.744 99.415  -11.587 -5.209 0.319  0.308  C19 LL6 12 
LL6 O3  O2  O 0 1 N N N -30.531 99.949  -11.675 -6.359 0.971  0.543  O3  LL6 13 
LL6 C   C11 C 0 1 N N N -32.106 97.982  -9.605  -4.331 1.740  -1.525 C   LL6 14 
LL6 N   N2  N 0 1 N N N -30.607 97.197  -11.358 -2.884 0.145  -0.364 N   LL6 15 
LL6 O   O3  O 0 1 N N N -31.237 96.612  -13.435 -1.401 1.774  -0.101 O   LL6 16 
LL6 C18 C12 C 0 1 N N N -28.598 93.386  -12.114 1.213  1.065  0.700  C18 LL6 17 
LL6 O1  O4  O 0 1 N N N -27.552 93.640  -11.550 0.587  1.177  1.736  O1  LL6 18 
LL6 C17 C13 C 0 1 Y N N -29.224 92.065  -12.346 2.535  1.668  0.444  C17 LL6 19 
LL6 C16 C14 C 0 1 Y N N -28.759 90.784  -12.064 3.374  2.462  1.228  C16 LL6 20 
LL6 C15 C15 C 0 1 Y N N -29.516 89.693  -12.460 4.582  2.892  0.720  C15 LL6 21 
LL6 C14 C16 C 0 1 Y N N -30.714 89.876  -13.128 4.965  2.542  -0.563 C14 LL6 22 
LL6 C13 C17 C 0 1 Y N N -31.178 91.154  -13.391 4.138  1.755  -1.347 C13 LL6 23 
LL6 C12 C18 C 0 1 Y N N -30.434 92.254  -12.992 2.932  1.319  -0.849 C12 LL6 24 
LL6 C11 C19 C 0 1 N N N -30.701 93.723  -13.133 1.827  0.466  -1.420 C11 LL6 25 
LL6 C9  C20 C 0 1 Y N N -27.244 99.686  -12.975 2.792  -3.243 0.667  C9  LL6 26 
LL6 H1  H1  H 0 1 N N N -32.650 97.493  -11.594 -3.728 1.838  0.541  H1  LL6 27 
LL6 H2  H2  H 0 1 N N N -28.567 95.940  -11.726 -0.532 -0.823 -1.470 H2  LL6 28 
LL6 H3  H3  H 0 1 N N N -28.750 95.791  -14.746 -0.369 -0.986 1.573  H3  LL6 29 
LL6 H4  H4  H 0 1 N N N -27.293 95.621  -13.710 -1.500 -1.925 0.570  H4  LL6 30 
LL6 H5  H5  H 0 1 N N N -28.695 97.752  -15.954 -0.693 -3.687 -0.896 H5  LL6 31 
LL6 H6  H6  H 0 1 N N N -28.266 100.164 -16.144 1.065  -5.360 -1.312 H6  LL6 32 
LL6 H7  H7  H 0 1 N N N -27.347 101.409 -14.234 3.296  -5.077 -0.310 H7  LL6 33 
LL6 H8  H8  H 0 1 N N N -27.242 97.814  -11.945 2.015  -1.441 1.515  H8  LL6 34 
LL6 H9  H9  H 0 1 N N N -30.603 100.856 -11.947 -7.106 0.444  0.859  H9  LL6 35 
LL6 H10 H10 H 0 1 N N N -32.150 96.946  -9.237  -4.605 0.976  -2.253 H10 LL6 36 
LL6 H11 H11 H 0 1 N N N -31.314 98.527  -9.070  -5.163 2.431  -1.392 H11 LL6 37 
LL6 H12 H12 H 0 1 N N N -33.074 98.475  -9.430  -3.458 2.286  -1.882 H12 LL6 38 
LL6 H13 H13 H 0 1 N N N -29.897 97.137  -10.657 -3.056 -0.795 -0.526 H13 LL6 39 
LL6 H14 H14 H 0 1 N N N -27.823 90.642  -11.545 3.079  2.738  2.229  H14 LL6 40 
LL6 H15 H15 H 0 1 N N N -29.169 88.693  -12.246 5.232  3.507  1.326  H15 LL6 41 
LL6 H16 H16 H 0 1 N N N -31.289 89.019  -13.445 5.912  2.883  -0.954 H16 LL6 42 
LL6 H17 H17 H 0 1 N N N -32.117 91.294  -13.906 4.440  1.484  -2.348 H17 LL6 43 
LL6 H18 H18 H 0 1 N N N -30.875 93.998  -14.184 2.207  -0.526 -1.663 H18 LL6 44 
LL6 H19 H19 H 0 1 N N N -31.564 94.032  -12.525 1.411  0.938  -2.310 H19 LL6 45 
LL6 H20 H20 H 0 1 N N N -26.838 100.231 -12.136 3.770  -3.119 1.107  H20 LL6 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LL6 C7  C6  DOUB Y N 1  
LL6 C7  C8  SING Y N 2  
LL6 C6  C5  SING Y N 3  
LL6 C8  C9  DOUB Y N 4  
LL6 C5  C4  SING N N 5  
LL6 C5  C10 DOUB Y N 6  
LL6 C4  C3  SING N N 7  
LL6 O   C2  DOUB N N 8  
LL6 C13 C14 DOUB Y N 9  
LL6 C13 C12 SING Y N 10 
LL6 C11 C12 SING N N 11 
LL6 C11 N1  SING N N 12 
LL6 C14 C15 SING Y N 13 
LL6 C12 C17 DOUB Y N 14 
LL6 C9  C10 SING Y N 15 
LL6 C3  N1  SING N N 16 
LL6 C3  C2  SING N N 17 
LL6 N1  C18 SING N N 18 
LL6 C2  N   SING N N 19 
LL6 C15 C16 DOUB Y N 20 
LL6 C17 C18 SING N N 21 
LL6 C17 C16 SING Y N 22 
LL6 C18 O1  DOUB N N 23 
LL6 O2  C19 DOUB N N 24 
LL6 O3  C19 SING N N 25 
LL6 C19 C1  SING N N 26 
LL6 N   C1  SING N N 27 
LL6 C1  C   SING N N 28 
LL6 C1  H1  SING N N 29 
LL6 C3  H2  SING N N 30 
LL6 C4  H3  SING N N 31 
LL6 C4  H4  SING N N 32 
LL6 C6  H5  SING N N 33 
LL6 C7  H6  SING N N 34 
LL6 C8  H7  SING N N 35 
LL6 C10 H8  SING N N 36 
LL6 O3  H9  SING N N 37 
LL6 C   H10 SING N N 38 
LL6 C   H11 SING N N 39 
LL6 C   H12 SING N N 40 
LL6 N   H13 SING N N 41 
LL6 C16 H14 SING N N 42 
LL6 C15 H15 SING N N 43 
LL6 C14 H16 SING N N 44 
LL6 C13 H17 SING N N 45 
LL6 C11 H18 SING N N 46 
LL6 C11 H19 SING N N 47 
LL6 C9  H20 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LL6 InChI            InChI                1.06  "InChI=1S/C20H20N2O4/c1-13(20(25)26)21-18(23)17(11-14-7-3-2-4-8-14)22-12-15-9-5-6-10-16(15)19(22)24/h2-10,13,17H,11-12H2,1H3,(H,21,23)(H,25,26)/t13-,17-/m0/s1" 
LL6 InChIKey         InChI                1.06  UFEBTJRSHCOXAH-GUYCJALGSA-N                                                                                                                                     
LL6 SMILES_CANONICAL CACTVS               3.385 "C[C@H](NC(=O)[C@H](Cc1ccccc1)N2Cc3ccccc3C2=O)C(O)=O"                                                                                                           
LL6 SMILES           CACTVS               3.385 "C[CH](NC(=O)[CH](Cc1ccccc1)N2Cc3ccccc3C2=O)C(O)=O"                                                                                                             
LL6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)NC(=O)[C@H](Cc1ccccc1)N2Cc3ccccc3C2=O"                                                                                                          
LL6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)NC(=O)C(Cc1ccccc1)N2Cc3ccccc3C2=O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           LL6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(2~{S})-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)-3-phenyl-propanoyl]amino]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LL6 "Create component"  2022-07-06 PDBE 
LL6 "Modify descriptor" 2022-08-22 RCSB 
LL6 "Initial release"   2023-04-26 RCSB 
# 
