data_LP6
# 
_chem_comp.id                                    LP6 
_chem_comp.name                                  6-piperidin-1-yl-L-norleucine 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H22 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-01-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        214.305 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     LP6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2W7Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LP6 N    N    N 0 1 N N N Y Y N 31.602 0.592 55.240 3.649  1.761  -0.042 N    LP6 1  
LP6 CA   CA   C 0 1 N N S Y N N 31.101 1.904 55.621 3.457  0.377  0.414  CA   LP6 2  
LP6 CB   CB   C 0 1 N N N N N N 31.340 2.080 57.125 2.147  -0.170 -0.157 CB   LP6 3  
LP6 CG   CG   C 0 1 N N N N N N 30.346 1.286 57.965 0.969  0.615  0.424  CG   LP6 4  
LP6 CD   CD   C 0 1 N N N N N N 30.260 1.820 59.395 -0.340 0.067  -0.147 CD   LP6 5  
LP6 CE   CE   C 0 1 N N N N N N 29.372 3.075 59.481 -1.518 0.852  0.435  CE   LP6 6  
LP6 NZ   NZ   N 0 1 N N N N N N 28.979 3.440 60.876 -2.775 0.326  -0.114 NZ   LP6 7  
LP6 CM   CM   C 0 1 N N N N N N 30.092 3.921 61.749 -3.905 1.198  0.232  CM   LP6 8  
LP6 C    C    C 0 1 N N N Y N Y 31.827 3.027 54.882 4.606  -0.473 -0.062 C    LP6 9  
LP6 C13  C13  C 0 1 N N N N N N 29.489 4.560 62.997 -5.169 0.701  -0.474 C13  LP6 10 
LP6 O    O    O 0 1 N N N Y N Y 32.995 2.881 54.476 5.290  -0.102 -0.987 O    LP6 11 
LP6 CCA  CCA  C 0 1 N N N N N N 28.630 3.559 63.772 -5.459 -0.738 -0.039 CCA  LP6 12 
LP6 CCC  CCC  C 0 1 N N N N N N 27.533 3.022 62.846 -4.247 -1.616 -0.366 CCC  LP6 13 
LP6 CCD  CCD  C 0 1 N N N N N N 28.111 2.430 61.549 -3.010 -1.052 0.337  CCD  LP6 14 
LP6 OXT  OXT  O 0 1 N Y N Y N Y 31.126 4.149 54.731 4.871  -1.642 0.542  OXT  LP6 15 
LP6 H    HN1  H 0 1 N N N Y Y N 31.717 0.554 54.247 4.474  2.167  0.373  HN1  LP6 16 
LP6 H2   HN2  H 0 1 N Y N Y Y N 32.483 0.430 55.684 3.690  1.807  -1.049 HN2  LP6 17 
LP6 HA   HA   H 0 1 N N N Y N N 30.033 1.961 55.363 3.415  0.356  1.503  HA   LP6 18 
LP6 HB1C HB1C H 0 0 N N N N N N 32.356 1.730 57.361 2.152  -0.067 -1.242 HB1C LP6 19 
LP6 HB2C HB2C H 0 0 N N N N N N 31.211 3.146 57.366 2.048  -1.223 0.107  HB2C LP6 20 
LP6 HG1C HG1C H 0 0 N N N N N N 29.352 1.360 57.500 0.964  0.511  1.509  HG1C LP6 21 
LP6 HG2C HG2C H 0 0 N N N N N N 30.689 0.242 58.008 1.069  1.668  0.160  HG2C LP6 22 
LP6 HD1C HD1C H 0 0 N N N N N N 29.831 1.038 60.039 -0.335 0.170  -1.232 HD1C LP6 23 
LP6 HD2C HD2C H 0 0 N N N N N N 31.274 2.093 59.722 -0.440 -0.986 0.118  HD2C LP6 24 
LP6 HE1C HE1C H 0 0 N N N N N N 29.932 3.919 59.052 -1.523 0.749  1.520  HE1C LP6 25 
LP6 HE2C HE2C H 0 0 N N N N N N 28.445 2.854 58.931 -1.418 1.905  0.170  HE2C LP6 26 
LP6 HM1C HM1C H 0 0 N N N N N N 30.732 3.074 62.037 -4.061 1.180  1.310  HM1C LP6 27 
LP6 HM2C HM2C H 0 0 N N N N N N 30.703 4.658 61.207 -3.688 2.217  -0.087 HM2C LP6 28 
LP6 HCD1 HCD1 H 0 0 N N N N N N 27.287 2.151 60.876 -2.143 -1.666 0.095  HCD1 LP6 29 
LP6 HCD2 HCD2 H 0 0 N N N N N N 28.710 1.540 61.791 -3.170 -1.059 1.415  HCD2 LP6 30 
LP6 H131 H131 H 0 0 N N N N N N 30.304 4.909 63.648 -6.011 1.339  -0.205 H131 LP6 31 
LP6 H132 H132 H 0 0 N N N N N N 28.851 5.400 62.685 -5.019 0.731  -1.553 H132 LP6 32 
LP6 HXT  HOT  H 0 1 N Y N Y N Y 31.654 4.794 54.276 5.619  -2.152 0.201  HOT  LP6 33 
LP6 HCA1 HCA1 H 0 0 N N N N N N 29.258 2.727 64.123 -5.647 -0.763 1.035  HCA1 LP6 34 
LP6 HCA2 HCA2 H 0 0 N N N N N N 28.173 4.056 64.641 -6.333 -1.111 -0.572 HCA2 LP6 35 
LP6 HCC1 HCC1 H 0 0 N N N N N N 26.981 2.233 63.377 -4.431 -2.633 -0.019 HCC1 LP6 36 
LP6 HCC2 HCC2 H 0 0 N N N N N N 26.876 3.861 62.574 -4.082 -1.622 -1.443 HCC2 LP6 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LP6 N   CA   SING N N 1  
LP6 CA  CB   SING N N 2  
LP6 CA  C    SING N N 3  
LP6 CB  CG   SING N N 4  
LP6 CG  CD   SING N N 5  
LP6 CD  CE   SING N N 6  
LP6 CE  NZ   SING N N 7  
LP6 NZ  CM   SING N N 8  
LP6 NZ  CCD  SING N N 9  
LP6 CM  C13  SING N N 10 
LP6 C   O    DOUB N N 11 
LP6 C   OXT  SING N N 12 
LP6 C13 CCA  SING N N 13 
LP6 CCA CCC  SING N N 14 
LP6 CCC CCD  SING N N 15 
LP6 N   H    SING N N 16 
LP6 N   H2   SING N N 17 
LP6 CA  HA   SING N N 18 
LP6 CB  HB1C SING N N 19 
LP6 CB  HB2C SING N N 20 
LP6 CG  HG1C SING N N 21 
LP6 CG  HG2C SING N N 22 
LP6 CD  HD1C SING N N 23 
LP6 CD  HD2C SING N N 24 
LP6 CE  HE1C SING N N 25 
LP6 CE  HE2C SING N N 26 
LP6 CM  HM1C SING N N 27 
LP6 CM  HM2C SING N N 28 
LP6 CCD HCD1 SING N N 29 
LP6 CCD HCD2 SING N N 30 
LP6 C13 H131 SING N N 31 
LP6 C13 H132 SING N N 32 
LP6 OXT HXT  SING N N 33 
LP6 CCA HCA1 SING N N 34 
LP6 CCA HCA2 SING N N 35 
LP6 CCC HCC1 SING N N 36 
LP6 CCC HCC2 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LP6 SMILES           ACDLabs              10.04 "O=C(O)C(N)CCCCN1CCCCC1"                                                                         
LP6 SMILES_CANONICAL CACTVS               3.352 "N[C@@H](CCCCN1CCCCC1)C(O)=O"                                                                    
LP6 SMILES           CACTVS               3.352 "N[CH](CCCCN1CCCCC1)C(O)=O"                                                                      
LP6 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1CCN(CC1)CCCC[C@@H](C(=O)O)N"                                                                  
LP6 SMILES           "OpenEye OEToolkits" 1.6.1 "C1CCN(CC1)CCCCC(C(=O)O)N"                                                                       
LP6 InChI            InChI                1.03  "InChI=1S/C11H22N2O2/c12-10(11(14)15)6-2-5-9-13-7-3-1-4-8-13/h10H,1-9,12H2,(H,14,15)/t10-/m0/s1" 
LP6 InChIKey         InChI                1.03  UCDGEGRDGSSPQT-JTQLQIEISA-N                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LP6 "SYSTEMATIC NAME" ACDLabs              10.04 6-piperidin-1-yl-L-norleucine                 
LP6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-amino-6-piperidin-1-yl-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LP6 "Create component"  2009-01-06 EBI  
LP6 "Modify descriptor" 2011-06-04 RCSB 
LP6 "Modify backbone"   2023-11-03 PDBE 
LP6 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LP6 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
