data_RF6
# 
_chem_comp.id                                    RF6 
_chem_comp.name                                  4,6-diethylpyrimidin-2-amine 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H13 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "4,6-bis(ethenyl)pyrimidin-2-amine (precursor); 4,6-Divinylpyrimidin-2-amine (precursor); peptide staple" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        151.209 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RF6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BR9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RF6 C6  C1  C 0 1 N N N N N N 32.536 -20.165 23.093 -2.459 -1.231 -0.510 C6  RF6 1  
RF6 C7  C2  C 0 1 N N N N N N 33.545 -19.557 22.143 -3.527 -0.753 0.475  C7  RF6 2  
RF6 N1  N1  N 0 1 Y N N N N N 32.251 -22.364 22.110 -1.132 0.819  -0.235 N1  RF6 3  
RF6 C2  C3  C 0 1 Y N N N N N 29.556 -22.027 21.712 1.167  -0.503 0.242  C2  RF6 4  
RF6 N2  N2  N 0 1 N N N N N N 32.034 -24.456 21.184 -0.000 2.850  0.000  N2  RF6 5  
RF6 C4  C4  C 0 1 Y N N N N N 31.655 -21.208 22.459 -1.167 -0.503 -0.242 C4  RF6 6  
RF6 N   N3  N 0 1 Y N N N N N 30.120 -23.195 21.350 1.132  0.819  0.235  N   RF6 7  
RF6 C   C5  C 0 1 N N N N N N 27.376 -20.739 22.106 3.527  -0.753 -0.475 C   RF6 8  
RF6 C1  C6  C 0 1 N N N N N N 28.077 -21.915 21.435 2.459  -1.231 0.510  C1  RF6 9  
RF6 C3  C7  C 0 1 Y N N N N N 31.455 -23.315 21.561 -0.000 1.466  -0.000 C3  RF6 10 
RF6 C5  C8  C 0 1 Y N N N N N 30.299 -20.997 22.268 0.000  -1.211 -0.000 C5  RF6 11 
RF6 H1  H1  H 0 1 N N N N N N 33.082 -20.632 23.926 -2.304 -2.303 -0.387 H1  RF6 12 
RF6 H3  H3  H 0 1 N N N N N N 34.148 -18.808 22.678 -3.199 -0.958 1.495  H3  RF6 13 
RF6 H4  H4  H 0 1 N N N N N N 34.204 -20.347 21.753 -3.682 0.319  0.352  H4  RF6 14 
RF6 H6  H6  H 0 1 N N N N N N 31.346 -25.064 20.787 0.822  3.335  0.171  H6  RF6 15 
RF6 H7  H7  H 0 1 N N N N N N 32.740 -24.262 20.503 -0.823 3.335  -0.170 H7  RF6 16 
RF6 H8  H8  H 0 1 N N N N N N 26.308 -20.748 21.842 3.682  0.319  -0.351 H8  RF6 17 
RF6 H9  H9  H 0 1 N N N N N N 27.484 -20.822 23.198 4.462  -1.280 -0.281 H9  RF6 18 
RF6 H11 H11 H 0 1 N N N N N N 27.941 -21.816 20.348 2.786  -1.026 1.529  H11 RF6 19 
RF6 H13 H13 H 0 1 N N N N N N 29.836 -20.061 22.543 0.000  -2.291 -0.001 H13 RF6 20 
RF6 H2  H2  H 0 1 N N N N N N 31.895 -19.359 23.481 -2.787 -1.026 -1.529 H2  RF6 21 
RF6 H5  H5  H 0 1 N N N N N N 33.017 -19.074 21.307 -4.462 -1.280 0.282  H5  RF6 22 
RF6 H10 H10 H 0 1 N N N N N N 27.830 -19.798 21.763 3.200  -0.958 -1.494 H10 RF6 23 
RF6 H12 H12 H 0 1 N N N N N N 27.595 -22.841 21.782 2.304  -2.303 0.387  H12 RF6 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RF6 N2 C3  SING N N 1  
RF6 N  C3  DOUB Y N 2  
RF6 N  C2  SING Y N 3  
RF6 C1 C2  SING N N 4  
RF6 C1 C   SING N N 5  
RF6 C3 N1  SING Y N 6  
RF6 C2 C5  DOUB Y N 7  
RF6 N1 C4  DOUB Y N 8  
RF6 C7 C6  SING N N 9  
RF6 C5 C4  SING Y N 10 
RF6 C4 C6  SING N N 11 
RF6 C6 H1  SING N N 12 
RF6 C7 H3  SING N N 13 
RF6 C7 H4  SING N N 14 
RF6 N2 H6  SING N N 15 
RF6 N2 H7  SING N N 16 
RF6 C  H8  SING N N 17 
RF6 C  H9  SING N N 18 
RF6 C1 H11 SING N N 19 
RF6 C5 H13 SING N N 20 
RF6 C6 H2  SING N N 21 
RF6 C7 H5  SING N N 22 
RF6 C  H10 SING N N 23 
RF6 C1 H12 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RF6 InChI            InChI                1.06  "InChI=1S/C8H13N3/c1-3-6-5-7(4-2)11-8(9)10-6/h5H,3-4H2,1-2H3,(H2,9,10,11)" 
RF6 InChIKey         InChI                1.06  WWRMBPPGHZDJNZ-UHFFFAOYSA-N                                                
RF6 SMILES_CANONICAL CACTVS               3.385 "CCc1cc(CC)nc(N)n1"                                                        
RF6 SMILES           CACTVS               3.385 "CCc1cc(CC)nc(N)n1"                                                        
RF6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1cc(nc(n1)N)CC"                                                        
RF6 SMILES           "OpenEye OEToolkits" 2.0.7 "CCc1cc(nc(n1)N)CC"                                                        
# 
_pdbx_chem_comp_identifier.comp_id           RF6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        4,6-diethylpyrimidin-2-amine 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 RF6 "4,6-bis(ethenyl)pyrimidin-2-amine (precursor)" PDB ? 
2 RF6 "4,6-Divinylpyrimidin-2-amine (precursor)"      PDB ? 
3 RF6 "peptide staple"                                PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RF6 "Create component"  2022-11-30 PDBE 
RF6 "Modify descriptor" 2022-12-30 PDBE 
RF6 "Initial release"   2023-03-08 RCSB 
RF6 "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 RF6 CYS None Crosslinker "Amino-acid side chain" "Any position" C  SG ? ? 
2 RF6 CYS None Crosslinker "Amino-acid side chain" "Any position" C7 SG ? ? 
# 
