data_WI6
# 
_chem_comp.id                                    WI6 
_chem_comp.name                                  "1,4,5,6-Tetrahydronicotinamide adenine dinucleotide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H31 N7 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[[(2R,3S,4R,5R)-5-[(3S)-3-aminocarbonyl-3,6-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3R,4S,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-04 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        667.457 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WI6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QNP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
WI6 O7N    O1  O 0 1 N N N 18.478 4.932  44.296 3.138  -4.517 -1.130 O7N    WI6 1  N N N 
WI6 C7N    C1  C 0 1 N N N 18.419 5.396  45.423 4.267  -4.915 -1.318 C7N    WI6 2  N N N 
WI6 N7N    N1  N 0 1 N N N 18.114 4.657  46.502 4.474  -6.060 -1.999 N7N    WI6 3  N N N 
WI6 C3N    C2  C 0 1 N N S 18.670 6.872  45.720 5.441  -4.127 -0.797 C3N    WI6 4  N N N 
WI6 C2N    C3  C 0 1 N N N 19.437 7.530  44.572 4.934  -2.880 -0.068 C2N    WI6 5  N N N 
WI6 C4N    C4  C 0 1 N N N 19.443 7.078  46.979 6.320  -3.719 -1.946 C4N    WI6 6  N N N 
WI6 C5N    C5  C 0 1 N N N 20.070 8.235  47.145 6.830  -2.531 -2.057 C5N    WI6 7  N N N 
WI6 C6N    C6  C 0 1 N N N 19.962 9.361  46.168 6.593  -1.436 -1.057 C6N    WI6 8  N N N 
WI6 N1N    N2  N 0 1 N N N 19.641 8.947  44.811 6.081  -1.997 0.199  N1N    WI6 9  N N N 
WI6 "C1'A" C7  C 0 0 N N R 20.341 9.611  43.741 5.715  -0.930 1.141  "C1'A" WI6 10 N N N 
WI6 "O4'A" O2  O 0 0 N N N 21.667 9.891  44.120 4.751  -0.038 0.541  "O4'A" WI6 11 N N N 
WI6 "C2'A" C8  C 0 0 N N R 19.824 10.977 43.251 6.940  -0.040 1.447  "C2'A" WI6 12 N N N 
WI6 "O2'A" O3  O 0 0 N N N 18.657 10.906 42.486 7.547  -0.429 2.681  "O2'A" WI6 13 N N N 
WI6 "C3'A" C9  C 0 0 N N S 21.051 11.512 42.497 6.351  1.385  1.555  "C3'A" WI6 14 N N N 
WI6 "O3'A" O4  O 0 0 N N N 20.998 11.155 41.132 6.575  1.921  2.861  "O3'A" WI6 15 N N N 
WI6 "C4'A" C10 C 0 0 N N R 22.221 10.880 43.251 4.840  1.186  1.303  "C4'A" WI6 16 N N N 
WI6 "C5'A" C11 C 0 0 N N N 23.021 11.946 43.985 4.277  2.358  0.495  "C5'A" WI6 17 N N N 
WI6 "O5'A" O5  O 0 0 N N N 22.441 12.185 45.245 2.861  2.214  0.372  "O5'A" WI6 18 N N N 
WI6 PN     P1  P 0 1 N N N 22.130 13.732 45.707 1.937  3.270  -0.417 PN     WI6 19 N N N 
WI6 O1N    O6  O 0 1 N N N 23.003 14.595 44.858 2.158  4.627  0.132  O1N    WI6 20 N N N 
WI6 O2N    O7  O 0 1 N N N 20.652 13.949 45.777 2.322  3.256  -1.981 O2N    WI6 21 N N N 
WI6 O3     O8  O 0 1 N N N 22.750 13.619 47.228 0.389  2.866  -0.242 O3     WI6 22 N N N 
WI6 PA     P2  P 0 1 N N N 24.027 14.456 47.840 -1.003 3.632  -0.499 PA     WI6 23 N N N 
WI6 O2P    O9  O 0 1 N N N 25.231 14.257 46.976 -0.951 4.326  -1.806 O2P    WI6 24 N N N 
WI6 O1     O10 O 0 1 N N N 24.084 14.259 49.318 -1.246 4.711  0.671  O1P    WI6 25 N N N 
WI6 "O5'"  O11 O 0 1 N N N 23.426 15.970 47.626 -2.210 2.566  -0.506 "O5'"  WI6 26 N N N 
WI6 H7N1   H1  H 0 1 N N N 17.923 3.681  46.402 3.718  -6.566 -2.338 H1     WI6 27 N N N 
WI6 H7N2   H2  H 0 1 N N N 18.078 5.083  47.406 5.378  -6.379 -2.150 H2     WI6 28 N N N 
WI6 H3N    H3  H 0 1 N N N 17.697 7.375  45.817 6.013  -4.744 -0.104 H3     WI6 29 N N N 
WI6 H2N1   H4  H 0 1 N N N 18.865 7.403  43.641 4.208  -2.360 -0.693 H4     WI6 30 N N N 
WI6 H2N2   H5  H 0 1 N N N 20.417 7.040  44.470 4.468  -3.171 0.874  H5     WI6 31 N N N 
WI6 H4N    H6  H 0 1 N N N 19.491 6.307  47.734 6.537  -4.448 -2.714 H6     WI6 32 N N N 
WI6 H5N    H7  H 0 1 N N N 20.684 8.369  48.023 7.457  -2.319 -2.911 H7     WI6 33 N N N 
WI6 H6N1   H8  H 0 1 N N N 20.925 9.893  46.147 7.530  -0.914 -0.864 H8     WI6 34 N N N 
WI6 H6N2   H9  H 0 1 N N N 19.173 10.044 46.516 5.864  -0.732 -1.459 H9     WI6 35 N N N 
WI6 "H1'A" H11 H 0 1 N N N 20.356 8.940  42.870 5.316  -1.357 2.061  H11    WI6 36 N N N 
WI6 "H2'A" H12 H 0 1 N N N 19.658 11.615 44.132 7.664  -0.093 0.633  H12    WI6 37 N N N 
WI6 HO2A   H13 H 0 1 N N N 17.948 10.568 43.020 8.322  0.098  2.921  H13    WI6 38 N N N 
WI6 "H3'A" H14 H 0 1 N N N 21.095 12.605 42.613 6.784  2.036  0.795  H14    WI6 39 N N N 
WI6 HO3A   H15 H 0 1 N N N 20.253 11.578 40.722 7.507  2.065  3.073  H15    WI6 40 N N N 
WI6 "H4'A" H16 H 0 1 N N N 22.882 10.396 42.517 4.307  1.087  2.248  H16    WI6 41 N N N 
WI6 "H5'1" H17 H 0 1 N N N 24.057 11.600 44.118 4.504  3.293  1.006  H17    WI6 42 N N N 
WI6 "H5'2" H18 H 0 1 N N N 23.018 12.876 43.398 4.729  2.366  -0.497 H18    WI6 43 N N N 
WI6 HO2N   H19 H 0 1 N N N 20.412 14.681 45.221 2.202  2.396  -2.408 H19    WI6 44 N N N 
WI6 HO2P   H20 H 0 1 N N N 24.964 14.004 49.570 -1.292 4.326  1.557  H20    WI6 45 N N N 
WI6 "C5'"  C12 C 0 1 N N N ?      ?      ?      -3.560 2.921  -0.813 C1     WI6 46 N N N 
WI6 "C4'"  C13 C 0 1 N N N ?      ?      ?      -4.445 1.676  -0.728 C2     WI6 47 N N N 
WI6 "O4'"  O12 O 0 1 N N N ?      ?      ?      -4.521 1.197  0.632  O1     WI6 48 N N N 
WI6 "C1'"  C14 C 0 1 N N N ?      ?      ?      -5.711 0.396  0.729  C4     WI6 49 N N N 
WI6 "C2'"  C15 C 0 1 N N N ?      ?      ?      -6.695 0.907  -0.340 C5     WI6 50 N N N 
WI6 "C3'"  C16 C 0 1 N N N ?      ?      ?      -5.916 2.028  -1.069 C6     WI6 51 N N N 
WI6 N9A    N3  N 0 1 Y N N ?      ?      ?      -5.387 -1.010 0.477  N1     WI6 52 N N N 
WI6 C4A    C17 C 0 1 Y N N ?      ?      ?      -6.105 -2.098 0.905  C7     WI6 53 N N N 
WI6 C5A    C18 C 0 1 Y N N ?      ?      ?      -5.419 -3.227 0.428  C8     WI6 54 N N N 
WI6 N7A    N4  N 0 1 Y N N ?      ?      ?      -4.338 -2.779 -0.253 N2     WI6 55 N N N 
WI6 C8A    C19 C 0 1 Y N N ?      ?      ?      -4.320 -1.478 -0.230 C10    WI6 56 N N N 
WI6 C6A    C20 C 0 1 Y N N ?      ?      ?      -5.944 -4.497 0.726  C3     WI6 57 N N N 
WI6 N1A    N5  N 0 1 Y N N ?      ?      ?      -7.060 -4.568 1.443  N4     WI6 58 N N N 
WI6 C2A    C22 C 0 1 Y N N ?      ?      ?      -7.670 -3.477 1.869  C11    WI6 59 N N N 
WI6 N3A    N6  N 0 1 Y N N ?      ?      ?      -7.216 -2.269 1.615  N3     WI6 60 N N N 
WI6 "O2'"  O13 O 0 1 N N N ?      ?      ?      -7.033 -0.141 -1.251 O4     WI6 61 N N N 
WI6 "O3'"  O14 O 0 1 N N N ?      ?      ?      -6.266 3.313  -0.551 O2     WI6 62 N N N 
WI6 "H5'A" H10 H 0 1 N N N ?      ?      ?      -3.911 3.666  -0.099 H10    WI6 63 N N N 
WI6 "H5'B" H21 H 0 1 N N N ?      ?      ?      -3.607 3.333  -1.821 H21    WI6 64 N N N 
WI6 "H4'"  H22 H 0 1 N N N ?      ?      ?      -4.072 0.895  -1.390 H22    WI6 65 N N N 
WI6 "H1'"  H23 H 0 1 N N N ?      ?      ?      -6.150 0.506  1.721  H23    WI6 66 N N N 
WI6 "H2'"  H24 H 0 1 N N N ?      ?      ?      -7.593 1.310  0.129  H24    WI6 67 N N N 
WI6 "H3'"  H25 H 0 1 N N N ?      ?      ?      -6.087 1.985  -2.145 H25    WI6 68 N N N 
WI6 H8A    H26 H 0 1 N N N ?      ?      ?      -3.567 -0.860 -0.697 H26    WI6 69 N N N 
WI6 H2A    H29 H 0 1 N N N ?      ?      ?      -8.576 -3.581 2.449  H29    WI6 70 N N N 
WI6 "HO2'" H31 H 0 1 N N N ?      ?      ?      -7.651 0.125  -1.945 H31    WI6 71 N N N 
WI6 "HO3'" H32 H 0 1 N N N ?      ?      ?      -7.199 3.540  -0.660 H32    WI6 72 N N N 
WI6 N6A    N7  N 0 1 N N N ?      ?      ?      -5.312 -5.645 0.283  N5     WI6 73 N N N 
WI6 H6A1   H27 H 0 1 N N N ?      ?      ?      -4.497 -5.580 -0.240 H27    WI6 74 N N N 
WI6 H6A2   H28 H 0 1 N N N ?      ?      ?      -5.683 -6.516 0.495  H28    WI6 75 N N N 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WI6 "O3'A" "C3'A" SING N N 1  
WI6 "O2'A" "C2'A" SING N N 2  
WI6 "C3'A" "C4'A" SING N N 3  
WI6 "C3'A" "C2'A" SING N N 4  
WI6 "C4'A" "C5'A" SING N N 5  
WI6 "C4'A" "O4'A" SING N N 6  
WI6 "C2'A" "C1'A" SING N N 7  
WI6 "C1'A" "O4'A" SING N N 8  
WI6 "C1'A" N1N    SING N N 9  
WI6 "C5'A" "O5'A" SING N N 10 
WI6 O7N    C7N    DOUB N N 11 
WI6 C2N    N1N    SING N N 12 
WI6 C2N    C3N    SING N N 13 
WI6 N1N    C6N    SING N N 14 
WI6 O1N    PN     DOUB N N 15 
WI6 "O5'A" PN     SING N N 16 
WI6 C7N    C3N    SING N N 17 
WI6 C7N    N7N    SING N N 18 
WI6 PN     O2N    SING N N 19 
WI6 PN     O3     SING N N 20 
WI6 C3N    C4N    SING N N 21 
WI6 C6N    C5N    SING N N 22 
WI6 O2P    PA     DOUB N N 23 
WI6 C4N    C5N    DOUB N N 24 
WI6 O3     PA     SING N N 25 
WI6 "O5'"  PA     SING N N 26 
WI6 PA     O1     SING N N 27 
WI6 N7N    H7N1   SING N N 28 
WI6 N7N    H7N2   SING N N 29 
WI6 C3N    H3N    SING N N 30 
WI6 C2N    H2N1   SING N N 31 
WI6 C2N    H2N2   SING N N 32 
WI6 C4N    H4N    SING N N 33 
WI6 C5N    H5N    SING N N 34 
WI6 C6N    H6N1   SING N N 35 
WI6 C6N    H6N2   SING N N 36 
WI6 "C1'A" "H1'A" SING N N 37 
WI6 "C2'A" "H2'A" SING N N 38 
WI6 "O2'A" HO2A   SING N N 39 
WI6 "C3'A" "H3'A" SING N N 40 
WI6 "O3'A" HO3A   SING N N 41 
WI6 "C4'A" "H4'A" SING N N 42 
WI6 "C5'A" "H5'1" SING N N 43 
WI6 "C5'A" "H5'2" SING N N 44 
WI6 O2N    HO2N   SING N N 45 
WI6 O1     HO2P   SING N N 46 
WI6 "O5'"  "C5'"  SING N N 47 
WI6 "C5'"  "C4'"  SING N N 48 
WI6 "C4'"  "O4'"  SING N N 49 
WI6 "O4'"  "C1'"  SING N N 50 
WI6 "C1'"  "C2'"  SING N N 51 
WI6 "C2'"  "C3'"  SING N N 52 
WI6 "C3'"  "C4'"  SING N N 53 
WI6 "C1'"  N9A    SING N N 54 
WI6 N9A    C4A    SING Y N 55 
WI6 C4A    C5A    DOUB Y N 56 
WI6 C5A    N7A    SING Y N 57 
WI6 N7A    C8A    DOUB Y N 58 
WI6 C8A    N9A    SING Y N 59 
WI6 C5A    C6A    SING Y N 60 
WI6 C6A    N1A    DOUB Y N 61 
WI6 N1A    C2A    SING Y N 62 
WI6 C2A    N3A    DOUB Y N 63 
WI6 N3A    C4A    SING Y N 64 
WI6 "C2'"  "O2'"  SING N N 65 
WI6 "C3'"  "O3'"  SING N N 66 
WI6 "C5'"  "H5'A" SING N N 67 
WI6 "C5'"  "H5'B" SING N N 68 
WI6 "C4'"  "H4'"  SING N N 69 
WI6 "C1'"  "H1'"  SING N N 70 
WI6 "C2'"  "H2'"  SING N N 71 
WI6 "C3'"  "H3'"  SING N N 72 
WI6 C8A    H8A    SING N N 73 
WI6 C2A    H2A    SING N N 74 
WI6 "O2'"  "HO2'" SING N N 75 
WI6 "O3'"  "HO3'" SING N N 76 
WI6 C6A    N6A    SING N N 77 
WI6 N6A    H6A1   SING N N 78 
WI6 N6A    H6A2   SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WI6 InChI            InChI                1.06  "InChI=1S/C21H31N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-2,7-11,13-16,20-21,29-32H,3-6H2,(H2,23,33)(H,34,35)(H,36,37)(H2,22,24,25)/t9-,10+,11?,13+,14?,15+,16?,20+,21?/m0/s1" 
WI6 InChIKey         InChI                1.06  GFDCQHGWOHYWLP-XQYAFYQJSA-N                                                                                                                                                                                                                                                                
WI6 SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@@H]1CN(CC=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OCC3OC(C(O)C3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O"                                                                                                                                                                              
WI6 SMILES           CACTVS               3.385 "NC(=O)[CH]1CN(CC=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OCC3OC(C(O)C3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O"                                                                                                                                                                                      
WI6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@H]([C@@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5CC=C[C@@H](C5)C(=O)N)O)O)O)O)N"                                                                                                                                                         
WI6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5CC=CC(C5)C(=O)N)O)O)O)O)N"                                                                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           WI6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},4~{R},5~{R})-5-[(3~{S})-3-aminocarbonyl-3,6-dihydro-2~{H}-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{R},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WI6 "Create component" 2023-10-04 PDBE 
WI6 "Modify name"      2023-11-11 PDBE 
WI6 "Initial release"  2024-01-17 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      WI6 
_pdbx_chem_comp_synonyms.name         "[[(2R,3S,4R,5R)-5-[(3S)-3-aminocarbonyl-3,6-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3R,4S,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
