data_YA6
# 
_chem_comp.id                                    YA6 
_chem_comp.name                                  "N-{(4P)-4-[(4P)-5-{3-[(8-fluoro-11-oxo-5,11-dihydro-10H-dibenzo[b,e][1,4]diazepin-10-yl)methyl]phenyl}-2-(methylsulfanyl)-1H-imidazol-4-yl]pyridin-2-yl}acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H25 F N6 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-19 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.633 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YA6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FV3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YA6 C01 C1  C 0 1 N N N N N N 34.892 16.352 35.879 -5.621 -3.960 1.885  C01 YA6 1  
YA6 C03 C2  C 0 1 Y N N N N N 35.388 14.687 33.494 -3.322 -3.424 0.499  C03 YA6 2  
YA6 C05 C3  C 0 1 Y N N N N N 35.941 15.388 31.539 -1.880 -2.227 -0.668 C05 YA6 3  
YA6 C06 C4  C 0 1 Y N N N N N 36.436 16.365 30.457 -0.693 -1.804 -1.435 C06 YA6 4  
YA6 C07 C5  C 0 1 Y N N N N N 37.551 17.146 30.727 -0.050 -0.602 -1.127 C07 YA6 5  
YA6 C08 C6  C 0 1 Y N N N N N 37.993 18.036 29.764 1.059  -0.213 -1.848 C08 YA6 6  
YA6 C09 C7  C 0 1 N N N N N N 39.217 18.934 29.964 1.754  1.083  -1.518 C09 YA6 7  
YA6 C11 C8  C 0 1 Y N N N N N 41.233 18.343 31.181 2.557  0.760  0.754  C11 YA6 8  
YA6 C12 C9  C 0 1 Y N N N N N 41.360 17.225 30.332 1.642  1.667  1.277  C12 YA6 9  
YA6 C13 C10 C 0 1 Y N N N N N 42.586 16.594 30.214 1.289  1.608  2.614  C13 YA6 10 
YA6 C15 C11 C 0 1 Y N N N N N 43.698 17.069 30.935 1.843  0.644  3.437  C15 YA6 11 
YA6 C16 C12 C 0 1 Y N N N N N 43.581 18.173 31.771 2.763  -0.254 2.927  C16 YA6 12 
YA6 C17 C13 C 0 1 Y N N N N N 42.320 18.813 31.874 3.134  -0.189 1.591  C17 YA6 13 
YA6 C19 C14 C 0 1 Y N N N N N 41.255 20.027 33.887 5.320  -0.525 0.640  C19 YA6 14 
YA6 C20 C15 C 0 1 Y N N N N N 41.861 20.239 35.153 6.522  -0.847 1.257  C20 YA6 15 
YA6 C21 C16 C 0 1 Y N N N N N 41.051 20.286 36.274 7.699  -0.271 0.822  C21 YA6 16 
YA6 C22 C17 C 0 1 Y N N N N N 39.667 20.125 36.140 7.688  0.631  -0.230 C22 YA6 17 
YA6 C23 C18 C 0 1 Y N N N N N 39.085 19.915 34.889 6.506  0.953  -0.861 C23 YA6 18 
YA6 C24 C19 C 0 1 Y N N N N N 39.904 19.837 33.744 5.307  0.368  -0.441 C24 YA6 19 
YA6 C25 C20 C 0 1 N N N N N N 39.258 19.646 32.354 4.061  0.665  -1.155 C25 YA6 20 
YA6 C27 C21 C 0 1 Y N N N N N 37.329 18.146 28.562 1.536  -1.010 -2.875 C27 YA6 21 
YA6 C28 C22 C 0 1 Y N N N N N 36.214 17.377 28.301 0.904  -2.201 -3.186 C28 YA6 22 
YA6 C29 C23 C 0 1 Y N N N N N 35.766 16.486 29.260 -0.203 -2.605 -2.470 C29 YA6 23 
YA6 C30 C24 C 0 1 Y N N N N N 35.525 14.081 31.434 -2.985 -1.457 -0.361 C30 YA6 24 
YA6 C31 C25 C 0 1 Y N N N N N 35.435 13.162 30.204 -3.197 -0.042 -0.740 C31 YA6 25 
YA6 C32 C26 C 0 1 Y N N N N N 36.285 13.275 29.117 -2.787 0.435  -1.992 C32 YA6 26 
YA6 C33 C27 C 0 1 Y N N N N N 36.150 12.394 28.055 -3.002 1.759  -2.308 C33 YA6 27 
YA6 C35 C28 C 0 1 Y N N N N N 34.398 11.301 29.070 -3.995 2.168  -0.260 C35 YA6 28 
YA6 C37 C29 C 0 1 N N N N N N 32.159 10.165 29.753 -4.890 4.322  0.186  C37 YA6 29 
YA6 C38 C30 C 0 1 N N N N N N 31.238 8.961  29.550 -5.464 5.329  1.149  C38 YA6 30 
YA6 C40 C31 C 0 1 Y N N N N N 34.488 12.145 30.170 -3.817 0.851  0.137  C40 YA6 31 
YA6 F14 F1  F 0 1 N N N N N N 42.695 15.516 29.393 0.402  2.495  3.116  F14 YA6 32 
YA6 N04 N1  N 0 1 Y N N N N N 35.846 15.736 32.801 -2.109 -3.474 -0.118 N04 YA6 33 
YA6 N10 N2  N 0 1 N N N N N N 39.919 18.975 31.255 2.868  0.820  -0.603 N10 YA6 34 
YA6 N18 N3  N 0 1 N N N N N N 42.192 19.975 32.763 4.128  -1.056 1.117  N18 YA6 35 
YA6 N34 N4  N 0 1 Y N N N N N 35.226 11.453 28.062 -3.586 2.576  -1.452 N34 YA6 36 
YA6 N36 N5  N 0 1 N N N N N N 33.412 10.224 28.999 -4.612 3.071  0.604  N36 YA6 37 
YA6 N41 N6  N 0 1 Y N N N N N 35.201 13.684 32.633 -3.836 -2.227 0.347  N41 YA6 38 
YA6 O26 O1  O 0 1 N N N N N N 38.192 20.108 32.184 4.130  0.779  -2.364 O26 YA6 39 
YA6 O39 O2  O 0 1 N N N N N N 31.831 11.009 30.506 -4.677 4.637  -0.966 O39 YA6 40 
YA6 S02 S1  S 0 1 N N N N N N 35.082 14.657 35.280 -4.085 -4.760 1.358  S02 YA6 41 
YA6 H1  H1  H 0 1 N N N N N N 34.706 16.340 36.963 -5.386 -3.103 2.517  H1  YA6 42 
YA6 H2  H2  H 0 1 N N N N N N 35.811 16.919 35.671 -6.174 -3.624 1.008  H2  YA6 43 
YA6 H3  H3  H 0 1 N N N N N N 34.043 16.829 35.367 -6.227 -4.670 2.447  H3  YA6 44 
YA6 H4  H4  H 0 1 N N N N N N 38.065 17.061 31.673 -0.421 0.021  -0.327 H4  YA6 45 
YA6 H5  H5  H 0 1 N N N N N N 39.959 18.624 29.213 2.135  1.535  -2.434 H5  YA6 46 
YA6 H6  H6  H 0 1 N N N N N N 38.889 19.963 29.753 1.048  1.763  -1.043 H6  YA6 47 
YA6 H7  H7  H 0 1 N N N N N N 40.507 16.863 29.778 1.206  2.420  0.638  H7  YA6 48 
YA6 H8  H8  H 0 1 N N N N N N 44.651 16.571 30.837 1.557  0.592  4.477  H8  YA6 49 
YA6 H9  H9  H 0 1 N N N N N N 44.431 18.535 32.330 3.194  -1.007 3.570  H9  YA6 50 
YA6 H10 H10 H 0 1 N N N N N N 42.931 20.361 35.239 6.536  -1.549 2.077  H10 YA6 51 
YA6 H11 H11 H 0 1 N N N N N N 41.485 20.446 37.250 8.632  -0.524 1.303  H11 YA6 52 
YA6 H12 H12 H 0 1 N N N N N N 39.040 20.164 37.018 8.611  1.085  -0.557 H12 YA6 53 
YA6 H13 H13 H 0 1 N N N N N N 38.014 19.813 34.799 6.506  1.657  -1.679 H13 YA6 54 
YA6 H14 H14 H 0 1 N N N N N N 37.685 18.841 27.816 2.405  -0.700 -3.436 H14 YA6 55 
YA6 H15 H15 H 0 1 N N N N N N 35.696 17.469 27.358 1.282  -2.817 -3.988 H15 YA6 56 
YA6 H16 H16 H 0 1 N N N N N N 34.889 15.884 29.070 -0.695 -3.535 -2.713 H16 YA6 57 
YA6 H17 H17 H 0 1 N N N N N N 37.045 14.042 29.097 -2.308 -0.225 -2.699 H17 YA6 58 
YA6 H18 H18 H 0 1 N N N N N N 36.813 12.480 27.207 -2.688 2.133  -3.272 H18 YA6 59 
YA6 H19 H19 H 0 1 N N N N N N 30.345 9.071  30.182 -5.620 6.276  0.633  H19 YA6 60 
YA6 H20 H20 H 0 1 N N N N N N 30.935 8.905  28.494 -6.416 4.963  1.533  H20 YA6 61 
YA6 H21 H21 H 0 1 N N N N N N 31.772 8.040  29.828 -4.770 5.476  1.977  H21 YA6 62 
YA6 H22 H22 H 0 1 N N N N N N 33.817 12.010 31.005 -4.152 0.521  1.110  H22 YA6 63 
YA6 H23 H23 H 0 1 N N N N N N 36.077 16.632 33.180 -1.517 -4.240 -0.163 H23 YA6 64 
YA6 H24 H24 H 0 1 N N N N N N 42.774 20.770 32.592 3.986  -2.016 1.121  H24 YA6 65 
YA6 H25 H25 H 0 1 N N N N N N 33.611 9.462  28.382 -4.842 2.800  1.507  H25 YA6 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YA6 C33 N34 DOUB Y N 1  
YA6 C33 C32 SING Y N 2  
YA6 N34 C35 SING Y N 3  
YA6 C28 C27 DOUB Y N 4  
YA6 C28 C29 SING Y N 5  
YA6 C27 C08 SING Y N 6  
YA6 N36 C35 SING N N 7  
YA6 N36 C37 SING N N 8  
YA6 C35 C40 DOUB Y N 9  
YA6 C32 C31 DOUB Y N 10 
YA6 C29 C06 DOUB Y N 11 
YA6 F14 C13 SING N N 12 
YA6 C38 C37 SING N N 13 
YA6 C37 O39 DOUB N N 14 
YA6 C08 C09 SING N N 15 
YA6 C08 C07 DOUB Y N 16 
YA6 C09 N10 SING N N 17 
YA6 C40 C31 SING Y N 18 
YA6 C31 C30 SING N N 19 
YA6 C13 C12 DOUB Y N 20 
YA6 C13 C15 SING Y N 21 
YA6 C12 C11 SING Y N 22 
YA6 C06 C07 SING Y N 23 
YA6 C06 C05 SING N N 24 
YA6 C15 C16 DOUB Y N 25 
YA6 C11 N10 SING N N 26 
YA6 C11 C17 DOUB Y N 27 
YA6 N10 C25 SING N N 28 
YA6 C30 C05 DOUB Y N 29 
YA6 C30 N41 SING Y N 30 
YA6 C05 N04 SING Y N 31 
YA6 C16 C17 SING Y N 32 
YA6 C17 N18 SING N N 33 
YA6 O26 C25 DOUB N N 34 
YA6 C25 C24 SING N N 35 
YA6 N41 C03 DOUB Y N 36 
YA6 N18 C19 SING N N 37 
YA6 N04 C03 SING Y N 38 
YA6 C03 S02 SING N N 39 
YA6 C24 C19 DOUB Y N 40 
YA6 C24 C23 SING Y N 41 
YA6 C19 C20 SING Y N 42 
YA6 C23 C22 DOUB Y N 43 
YA6 C20 C21 DOUB Y N 44 
YA6 S02 C01 SING N N 45 
YA6 C22 C21 SING Y N 46 
YA6 C01 H1  SING N N 47 
YA6 C01 H2  SING N N 48 
YA6 C01 H3  SING N N 49 
YA6 C07 H4  SING N N 50 
YA6 C09 H5  SING N N 51 
YA6 C09 H6  SING N N 52 
YA6 C12 H7  SING N N 53 
YA6 C15 H8  SING N N 54 
YA6 C16 H9  SING N N 55 
YA6 C20 H10 SING N N 56 
YA6 C21 H11 SING N N 57 
YA6 C22 H12 SING N N 58 
YA6 C23 H13 SING N N 59 
YA6 C27 H14 SING N N 60 
YA6 C28 H15 SING N N 61 
YA6 C29 H16 SING N N 62 
YA6 C32 H17 SING N N 63 
YA6 C33 H18 SING N N 64 
YA6 C38 H19 SING N N 65 
YA6 C38 H20 SING N N 66 
YA6 C38 H21 SING N N 67 
YA6 C40 H22 SING N N 68 
YA6 N04 H23 SING N N 69 
YA6 N18 H24 SING N N 70 
YA6 N36 H25 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YA6 SMILES           ACDLabs              12.01 "CC(=O)Nc1nccc(c1)c1nc(SC)[NH]c1c1cccc(c1)CN1c2cc(F)ccc2Nc2ccccc2C1=O"                                                                                                                                  
YA6 InChI            InChI                1.06  "InChI=1S/C31H25FN6O2S/c1-18(39)34-27-15-21(12-13-33-27)29-28(36-31(37-29)41-2)20-7-5-6-19(14-20)17-38-26-16-22(32)10-11-25(26)35-24-9-4-3-8-23(24)30(38)40/h3-16,35H,17H2,1-2H3,(H,36,37)(H,33,34,39)" 
YA6 InChIKey         InChI                1.06  WVHZDFHSSZOISX-UHFFFAOYSA-N                                                                                                                                                                             
YA6 SMILES_CANONICAL CACTVS               3.385 "CSc1[nH]c(c2cccc(CN3C(=O)c4ccccc4Nc5ccc(F)cc35)c2)c(n1)c6ccnc(NC(C)=O)c6"                                                                                                                              
YA6 SMILES           CACTVS               3.385 "CSc1[nH]c(c2cccc(CN3C(=O)c4ccccc4Nc5ccc(F)cc35)c2)c(n1)c6ccnc(NC(C)=O)c6"                                                                                                                              
YA6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)CN4c5cc(ccc5Nc6ccccc6C4=O)F"                                                                                                                                
YA6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1cc(ccn1)c2c([nH]c(n2)SC)c3cccc(c3)CN4c5cc(ccc5Nc6ccccc6C4=O)F"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YA6 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(4P)-4-[(4P)-5-{3-[(8-fluoro-11-oxo-5,11-dihydro-10H-dibenzo[b,e][1,4]diazepin-10-yl)methyl]phenyl}-2-(methylsulfanyl)-1H-imidazol-4-yl]pyridin-2-yl}acetamide" 
YA6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[4-[5-[3-[(3-fluoranyl-6-oxidanylidene-11~{H}-benzo[b][1,4]benzodiazepin-5-yl)methyl]phenyl]-2-methylsulfanyl-1~{H}-imidazol-4-yl]pyridin-2-yl]ethanamide"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YA6 "Create component" 2023-01-19 RCSB 
YA6 "Initial release"  2024-01-17 RCSB 
# 
