data_YL6
# 
_chem_comp.id                                    YL6 
_chem_comp.name                                  "[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H18 Cl F N3 O3 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-12 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        477.876 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YL6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JV1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YL6 CAP C1  C  0 1 Y N N 3.288 76.461 28.274 -3.714 0.118  0.737  CAP YL6 1  
YL6 CAQ C2  C  0 1 Y N N 2.658 77.693 28.397 -4.957 0.458  1.232  CAQ YL6 2  
YL6 CL  CL1 CL 0 0 N N N 0.972 77.663 28.766 -5.093 1.203  2.795  CL  YL6 3  
YL6 CAR C3  C  0 1 Y N N 3.371 78.892 28.236 -6.095 0.206  0.486  CAR YL6 4  
YL6 CAW C4  C  0 1 N N N 2.709 80.116 28.358 -7.449 0.580  1.032  CAW YL6 5  
YL6 CAS C5  C  0 1 Y N N 4.743 78.825 27.949 -5.995 -0.387 -0.760 CAS YL6 6  
YL6 CAT C6  C  0 1 Y N N 5.390 77.589 27.824 -4.759 -0.731 -1.266 CAT YL6 7  
YL6 CAO C7  C  0 1 Y N N 4.666 76.378 27.979 -3.607 -0.475 -0.522 CAO YL6 8  
YL6 CAM C8  C  0 1 Y N N 5.274 75.166 27.831 -2.279 -0.841 -1.059 CAM YL6 9  
YL6 SAN S1  S  0 1 Y N N 6.749 74.954 26.965 -2.016 -1.595 -2.621 SAN YL6 10 
YL6 CAL C9  C  0 1 Y N N 4.831 73.938 28.262 -1.126 -0.637 -0.422 CAL YL6 11 
YL6 C5  C10 C  0 1 Y N N 5.635 72.849 27.973 0.048  -1.077 -1.144 C5  YL6 12 
YL6 C6  C11 C  0 1 Y N N 6.767 73.189 27.262 -0.275 -1.635 -2.385 C6  YL6 13 
YL6 N1  N1  N  0 1 Y N N 7.675 72.258 26.872 0.710  -2.087 -3.171 N1  YL6 14 
YL6 C2  C12 C  0 1 Y N N 7.508 70.904 27.183 1.965  -2.018 -2.793 C2  YL6 15 
YL6 N3  N2  N  0 1 Y N N 6.371 70.574 27.915 2.323  -1.505 -1.629 N3  YL6 16 
YL6 C4  C13 C  0 1 Y N N 5.464 71.525 28.287 1.422  -1.023 -0.786 C4  YL6 17 
YL6 NAB N3  N  0 1 N N N 4.361 71.153 29.002 1.811  -0.482 0.425  NAB YL6 18 
YL6 CAC C14 C  0 1 N N R 4.144 69.723 29.397 3.231  -0.432 0.782  CAC YL6 19 
YL6 PAA P1  P  0 1 N N N 2.728 69.137 28.457 3.591  -1.715 2.026  PAA YL6 20 
YL6 OAD O1  O  0 1 N N N 3.638 68.643 27.137 2.864  -1.406 3.278  OAD YL6 21 
YL6 OAU O2  O  0 1 N N N 2.101 68.036 29.260 3.115  -3.149 1.471  OAU YL6 22 
YL6 OAE O3  O  0 1 N N N 1.858 70.299 28.052 5.173  -1.751 2.319  OAE YL6 23 
YL6 CAV C15 C  0 1 N N N 3.974 69.470 30.933 3.564  0.945  1.360  CAV YL6 24 
YL6 CAX C16 C  0 1 Y N N 4.912 70.260 31.585 3.389  1.993  0.291  CAX YL6 25 
YL6 CAY C17 C  0 1 Y N N 4.481 71.242 32.483 2.201  2.694  0.198  CAY YL6 26 
YL6 CAZ C18 C  0 1 Y N N 5.428 72.058 33.123 2.041  3.656  -0.784 CAZ YL6 27 
YL6 FBD F1  F  0 1 N N N 4.988 72.967 33.994 0.880  4.341  -0.876 FBD YL6 28 
YL6 CBA C19 C  0 1 Y N N 6.806 71.918 32.877 3.071  3.917  -1.672 CBA YL6 29 
YL6 CBB C20 C  0 1 Y N N 7.235 70.956 31.951 4.258  3.216  -1.577 CBB YL6 30 
YL6 CBC C21 C  0 1 Y N N 6.295 70.134 31.309 4.419  2.258  -0.592 CBC YL6 31 
YL6 H1  H1  H  0 1 N N N 2.716 75.555 28.406 -2.826 0.315  1.319  H1  YL6 32 
YL6 H2  H2  H  0 1 N N N 2.324 80.425 27.375 -7.695 1.597  0.729  H2  YL6 33 
YL6 H3  H3  H  0 1 N N N 1.871 80.011 29.063 -8.201 -0.107 0.643  H3  YL6 34 
YL6 H4  H4  H  0 1 N N N 3.410 80.876 28.732 -7.431 0.520  2.121  H4  YL6 35 
YL6 H5  H5  H  0 1 N N N 5.307 79.737 27.823 -6.887 -0.582 -1.337 H5  YL6 36 
YL6 H6  H6  H  0 1 N N N 6.448 77.557 27.608 -4.683 -1.195 -2.239 H6  YL6 37 
YL6 H7  H7  H  0 1 N N N 3.901 73.828 28.800 -1.073 -0.178 0.555  H7  YL6 38 
YL6 H8  H8  H  0 1 N N N 8.222 70.156 26.872 2.732  -2.393 -3.455 H8  YL6 39 
YL6 H9  H9  H  0 1 N N N 4.380 71.683 29.850 1.145  -0.135 1.039  H9  YL6 40 
YL6 H10 H10 H  0 1 N N N 4.999 69.125 29.047 3.836  -0.609 -0.107 H10 YL6 41 
YL6 H11 H11 H  0 1 N N N 2.328 67.196 28.878 2.170  -3.201 1.273  H11 YL6 42 
YL6 H12 H12 H  0 1 N N N 2.009 70.505 27.137 5.515  -0.946 2.733  H12 YL6 43 
YL6 H13 H13 H  0 1 N N N 2.959 69.750 31.251 2.895  1.161  2.193  H13 YL6 44 
YL6 H14 H14 H  0 1 N N N 4.150 68.409 31.162 4.596  0.953  1.710  H14 YL6 45 
YL6 H15 H15 H  0 1 N N N 3.428 71.372 32.683 1.398  2.489  0.890  H15 YL6 46 
YL6 H16 H16 H  0 1 N N N 7.522 72.541 33.393 2.947  4.667  -2.438 H16 YL6 47 
YL6 H17 H17 H  0 1 N N N 8.287 70.848 31.732 5.062  3.418  -2.269 H17 YL6 48 
YL6 H18 H18 H  0 1 N N N 6.631 69.396 30.596 5.348  1.714  -0.516 H18 YL6 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YL6 N1  C2  DOUB Y N 1  
YL6 N1  C6  SING Y N 2  
YL6 SAN C6  SING Y N 3  
YL6 SAN CAM SING Y N 4  
YL6 OAD PAA DOUB N N 5  
YL6 C2  N3  SING Y N 6  
YL6 C6  C5  DOUB Y N 7  
YL6 CAT CAS DOUB Y N 8  
YL6 CAT CAO SING Y N 9  
YL6 CAM CAO SING N N 10 
YL6 CAM CAL DOUB Y N 11 
YL6 N3  C4  DOUB Y N 12 
YL6 CAS CAR SING Y N 13 
YL6 C5  CAL SING Y N 14 
YL6 C5  C4  SING Y N 15 
YL6 CAO CAP DOUB Y N 16 
YL6 OAE PAA SING N N 17 
YL6 CAR CAW SING N N 18 
YL6 CAR CAQ DOUB Y N 19 
YL6 CAP CAQ SING Y N 20 
YL6 C4  NAB SING N N 21 
YL6 CAQ CL  SING N N 22 
YL6 PAA OAU SING N N 23 
YL6 PAA CAC SING N N 24 
YL6 NAB CAC SING N N 25 
YL6 CAC CAV SING N N 26 
YL6 CAV CAX SING N N 27 
YL6 CBC CAX DOUB Y N 28 
YL6 CBC CBB SING Y N 29 
YL6 CAX CAY SING Y N 30 
YL6 CBB CBA DOUB Y N 31 
YL6 CAY CAZ DOUB Y N 32 
YL6 CBA CAZ SING Y N 33 
YL6 CAZ FBD SING N N 34 
YL6 CAP H1  SING N N 35 
YL6 CAW H2  SING N N 36 
YL6 CAW H3  SING N N 37 
YL6 CAW H4  SING N N 38 
YL6 CAS H5  SING N N 39 
YL6 CAT H6  SING N N 40 
YL6 CAL H7  SING N N 41 
YL6 C2  H8  SING N N 42 
YL6 NAB H9  SING N N 43 
YL6 CAC H10 SING N N 44 
YL6 OAU H11 SING N N 45 
YL6 OAE H12 SING N N 46 
YL6 CAV H13 SING N N 47 
YL6 CAV H14 SING N N 48 
YL6 CAY H15 SING N N 49 
YL6 CBA H16 SING N N 50 
YL6 CBB H17 SING N N 51 
YL6 CBC H18 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YL6 SMILES           ACDLabs              12.01 "c1c(Cl)c(C)ccc1c2cc3c(ncnc3s2)NC(Cc4cc(F)ccc4)P(O)(=O)O"                                                                                                                              
YL6 InChI            InChI                1.03  "InChI=1S/C21H18ClFN3O3PS/c1-12-5-6-14(9-17(12)22)18-10-16-20(24-11-25-21(16)31-18)26-19(30(27,28)29)8-13-3-2-4-15(23)7-13/h2-7,9-11,19H,8H2,1H3,(H,24,25,26)(H2,27,28,29)/t19-/m1/s1" 
YL6 InChIKey         InChI                1.03  ZSPBSSJYWQDARC-LJQANCHMSA-N                                                                                                                                                            
YL6 SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(cc1Cl)c2sc3ncnc(N[C@@H](Cc4cccc(F)c4)[P](O)(O)=O)c3c2"                                                                                                                         
YL6 SMILES           CACTVS               3.385 "Cc1ccc(cc1Cl)c2sc3ncnc(N[CH](Cc4cccc(F)c4)[P](O)(O)=O)c3c2"                                                                                                                           
YL6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1Cl)c2cc3c(ncnc3s2)N[C@@H](Cc4cccc(c4)F)P(=O)(O)O"                                                                                                                           
YL6 SMILES           "OpenEye OEToolkits" 2.0.4 "Cc1ccc(cc1Cl)c2cc3c(ncnc3s2)NC(Cc4cccc(c4)F)P(=O)(O)O"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YL6 "SYSTEMATIC NAME" ACDLabs              12.01 "[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid"        
YL6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(1~{R})-1-[[6-(3-chloranyl-4-methyl-phenyl)thieno[2,3-d]pyrimidin-4-yl]amino]-2-(3-fluorophenyl)ethyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YL6 "Create component" 2016-05-12 RCSB 
YL6 "Initial release"  2017-03-15 RCSB 
# 
