data_DM7
#

_chem_comp.id                                   DM7
_chem_comp.name                                 "4'-DEOXY-4'-IODODOXORUBICIN"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C27 H29 I N O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4'-DEOXY-4'-IODOADRIAMYCIN"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       654.424
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DM7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1IMS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DM7  C1      C1    C  0  1  Y  N  N  15.155  18.280   4.841   7.332  -0.431   0.454  C1      DM7   1  
DM7  C2      C2    C  0  1  Y  N  N  16.316  19.039   4.834   8.015  -1.518  -0.067  C2      DM7   2  
DM7  C3      C3    C  0  1  Y  N  N  17.534  18.322   4.812   7.329  -2.603  -0.573  C3      DM7   3  
DM7  C4      C4    C  0  1  Y  N  N  17.610  16.939   4.799   5.937  -2.620  -0.568  C4      DM7   4  
DM7  C5      C5    C  0  1  N  N  N  16.390  14.816   4.814   3.759  -1.526  -0.030  C5      DM7   5  
DM7  C6      C6    C  0  1  Y  N  N  15.176  12.721   4.833   1.683  -0.144  -0.020  C6      DM7   6  
DM7  C7      C7    C  0  1  N  N  S  13.982  10.565   4.884  -0.459   1.115  -0.078  C7      DM7   7  
DM7  C8      C8    C  0  1  N  N  N  12.716   9.790   4.704  -1.117   2.296   0.631  C8      DM7   8  
DM7  C9      C9    C  0  1  N  N  S  11.606  10.532   5.506  -0.305   3.559   0.319  C9      DM7   9  
DM7  C10     C10   C  0  1  N  N  N  11.489  11.955   4.877   1.037   3.456   1.039  C10     DM7  10  
DM7  C11     C11   C  0  1  Y  N  N  12.762  14.095   4.856   3.075   2.034   1.000  C11     DM7  11  
DM7  C12     C12   C  0  1  N  N  N  14.011  16.206   4.848   5.198   0.726   1.021  C12     DM7  12  
DM7  C13     C13   C  0  1  N  N  N  10.319   9.754   5.193  -0.078   3.664  -1.167  C13     DM7  13  
DM7  C14     C14   C  0  1  N  N  N   9.816   8.744   6.124  -1.122   4.304  -2.045  C14     DM7  14  
DM7  C15     C15   C  0  1  Y  N  N  15.229  16.882   4.832   5.942  -0.427   0.469  C15     DM7  15  
DM7  C16     C16   C  0  1  Y  N  N  16.434  16.189   4.815   5.235  -1.529  -0.051  C16     DM7  16  
DM7  C17     C17   C  0  1  Y  N  N  15.205  14.100   4.831   3.047  -0.262   0.235  C17     DM7  17  
DM7  C18     C18   C  0  1  Y  N  N  13.985  14.808   4.849   3.753   0.844   0.751  C18     DM7  18  
DM7  C19     C19   C  0  1  Y  N  N  13.930  12.031   4.854   1.015   1.062   0.232  C19     DM7  19  
DM7  C20     C20   C  0  1  Y  N  N  12.713  12.708   4.864   1.702   2.137   0.738  C20     DM7  20  
DM7  C21     C21   C  0  1  N  N  N  20.117  17.012   4.769   6.251  -4.620  -1.517  C21     DM7  21  
DM7  O4      O4    O  0  1  N  N  N  18.847  16.311   4.777   5.266  -3.688  -1.066  O4      DM7  22  
DM7  O5      O5    O  0  1  N  N  N  17.543  14.086   4.790   3.138  -2.552  -0.233  O5      DM7  23  
DM7  O6      O6    O  0  1  N  N  N  16.333  11.928   4.828   0.997  -1.203  -0.516  O6      DM7  24  
DM7  O7      O7    O  0  1  N  N  N  14.581  10.268   6.110  -1.074  -0.099   0.359  O7      DM7  25  
DM7  O9      O9    O  0  1  N  N  N  11.546  10.721   6.995  -1.012   4.712   0.781  O9      DM7  26  
DM7  O11     O11   O  0  1  N  N  N  11.526  14.770   4.878   3.747   3.101   1.498  O11     DM7  27  
DM7  O12     O12   O  0  1  N  N  N  12.865  16.931   4.869   5.771   1.566   1.688  O12     DM7  28  
DM7  O13     O13   O  0  1  N  N  N   9.709   9.992   3.925   0.940   3.234  -1.654  O13     DM7  29  
DM7  O14     O14   O  0  1  N  N  N   8.551   8.217   5.780  -0.679   4.284  -3.404  O14     DM7  30  
DM7  "C1'"   C1*   C  0  1  N  N  R  15.352   9.169   6.539  -2.055  -0.441  -0.622  "C1'"   DM7  31  
DM7  "C2'"   C2*   C  0  1  N  N  N  16.506   9.543   7.486  -2.491  -1.894  -0.420  "C2'"   DM7  32  
DM7  "C3'"   C3*   C  0  1  N  N  S  15.839   9.836   8.844  -3.061  -2.053   0.994  "C3'"   DM7  33  
DM7  "C4'"   C4*   C  0  1  N  N  S  14.990   8.610   9.321  -4.163  -1.007   1.198  "C4'"   DM7  34  
DM7  "C5'"   C5*   C  0  1  N  N  S  13.891   8.378   8.250  -3.601   0.379   0.874  "C5'"   DM7  35  
DM7  "C6'"   C6*   C  0  1  N  N  N  12.934   7.207   8.570  -4.684   1.435   1.106  "C6'"   DM7  36  
DM7  "O5'"   O5*   O  0  1  N  N  N  14.520   8.112   6.985  -3.182   0.423  -0.488  "O5'"   DM7  37  
DM7  "N3'"   N3*   N  1  1  N  N  N  16.926  10.061   9.812  -3.622  -3.401   1.151  "N3'"   DM7  38  
DM7  "I4'"   I4*   I  0  1  N  N  N  16.140   6.860   9.767  -5.825  -1.441  -0.114  "I4'"   DM7  39  
DM7  H1      H1    H  0  1  N  N  N  14.175  18.786   4.853   7.879   0.412   0.848  H1      DM7  40  
DM7  H2      H2    H  0  1  N  N  N  16.273  20.141   4.845   9.095  -1.517  -0.077  H2      DM7  41  
DM7  H3      H3    H  0  1  N  N  N  18.486  18.877   4.804   7.874  -3.443  -0.976  H3      DM7  42  
DM7  H7      H7    H  0  1  N  N  N  14.539  10.234   3.976  -0.596   1.220  -1.154  H7      DM7  43  
DM7  H81     1H8   H  0  1  N  N  N  12.449   9.630   3.633  -1.125   2.121   1.707  H81     DM7  44  
DM7  H82     2H8   H  0  1  N  N  N  12.816   8.716   4.987  -2.139   2.418   0.271  H82     DM7  45  
DM7  H101    1H10  H  0  0  N  N  N  11.064  11.889   3.848   0.876   3.540   2.114  H101    DM7  46  
DM7  H102    2H10  H  0  0  N  N  N  10.682  12.536   5.382   1.685   4.268   0.709  H102    DM7  47  
DM7  H141    1H14  H  0  0  N  N  N  10.560   7.922   6.247  -2.058   3.752  -1.960  H141    DM7  48  
DM7  H142    2H14  H  0  0  N  N  N   9.801   9.145   7.164  -1.279   5.336  -1.730  H142    DM7  49  
DM7  H211    1H21  H  0  0  N  N  N  21.111  16.507   4.751   6.866  -4.155  -2.288  H211    DM7  50  
DM7  H212    2H21  H  0  0  N  N  N  20.094  17.717   3.906   6.881  -4.916  -0.679  H212    DM7  51  
DM7  H213    3H21  H  0  0  N  N  N  20.115  17.699   5.647   5.757  -5.500  -1.928  H213    DM7  52  
DM7  HO6     HO6   H  0  1  N  N  N  16.313  10.978   4.829   0.974  -1.096  -1.477  HO6     DM7  53  
DM7  HO9     HO9   H  0  1  N  N  N  10.869  11.173   7.484  -0.458   5.479   0.580  HO9     DM7  54  
DM7  HO11    HO11  H  0  0  N  N  N  10.705  14.291   4.882   4.071   3.607   0.740  HO11    DM7  55  
DM7  HO14    HO14  H  0  0  N  N  N   8.224   7.561   6.384  -1.374   4.702  -3.931  HO14    DM7  56  
DM7  "H1'"   H1*   H  0  1  N  N  N  15.898   8.775   5.650  -1.627  -0.327  -1.618  "H1'"   DM7  57  
DM7  "H2'1"  1H2*  H  0  0  N  N  N  17.312   8.774   7.537  -3.256  -2.151  -1.153  "H2'1"  DM7  58  
DM7  "H2'2"  2H2*  H  0  0  N  N  N  17.144  10.376   7.109  -1.631  -2.553  -0.542  "H2'2"  DM7  59  
DM7  "H3'"   H3*   H  0  1  N  N  N  15.162  10.718   8.757  -2.270  -1.898   1.727  "H3'"   DM7  60  
DM7  "H4'"   H4*   H  0  1  N  N  N  14.524   8.840  10.307  -4.500  -1.030   2.235  "H4'"   DM7  61  
DM7  "H5'"   H5*   H  0  1  N  N  N  13.274   9.306   8.229  -2.749   0.586   1.522  "H5'"   DM7  62  
DM7  "H6'1"  1H6*  H  0  0  N  N  N  12.144   7.040   7.800  -5.002   1.406   2.148  "H6'1"  DM7  63  
DM7  "H6'2"  2H6*  H  0  0  N  N  N  13.510   6.269   8.748  -4.284   2.422   0.875  "H6'2"  DM7  64  
DM7  "H6'3"  3H6*  H  0  0  N  N  N  12.475   7.341   9.577  -5.537   1.228   0.460  "H6'3"  DM7  65  
DM7  "HN'1"  1HN*  H  0  0  N  N  N  16.484  10.254  10.710  -2.897  -4.087   1.004  "HN'1"  DM7  66  
DM7  "HN'2"  2HN*  H  0  0  N  N  N  17.595   9.292   9.850  -3.997  -3.503   2.082  "HN'2"  DM7  67  
DM7  "HN'3"  3HN*  H  0  0  N  N  N  17.580  10.787   9.520  -4.359  -3.540   0.475  "HN'3"  DM7  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DM7  C1     C2      DOUB  Y  N   1  
DM7  C1     C15     SING  Y  N   2  
DM7  C1     H1      SING  N  N   3  
DM7  C2     C3      SING  Y  N   4  
DM7  C2     H2      SING  N  N   5  
DM7  C3     C4      DOUB  Y  N   6  
DM7  C3     H3      SING  N  N   7  
DM7  C4     C16     SING  Y  N   8  
DM7  C4     O4      SING  N  N   9  
DM7  C5     C16     SING  N  N  10  
DM7  C5     C17     SING  N  N  11  
DM7  C5     O5      DOUB  N  N  12  
DM7  C6     C17     DOUB  Y  N  13  
DM7  C6     C19     SING  Y  N  14  
DM7  C6     O6      SING  N  N  15  
DM7  C7     C8      SING  N  N  16  
DM7  C7     C19     SING  N  N  17  
DM7  C7     O7      SING  N  N  18  
DM7  C7     H7      SING  N  N  19  
DM7  C8     C9      SING  N  N  20  
DM7  C8     H81     SING  N  N  21  
DM7  C8     H82     SING  N  N  22  
DM7  C9     C10     SING  N  N  23  
DM7  C9     C13     SING  N  N  24  
DM7  C9     O9      SING  N  N  25  
DM7  C10    C20     SING  N  N  26  
DM7  C10    H101    SING  N  N  27  
DM7  C10    H102    SING  N  N  28  
DM7  C11    C18     DOUB  Y  N  29  
DM7  C11    C20     SING  Y  N  30  
DM7  C11    O11     SING  N  N  31  
DM7  C12    C15     SING  N  N  32  
DM7  C12    C18     SING  N  N  33  
DM7  C12    O12     DOUB  N  N  34  
DM7  C13    C14     SING  N  N  35  
DM7  C13    O13     DOUB  N  N  36  
DM7  C14    O14     SING  N  N  37  
DM7  C14    H141    SING  N  N  38  
DM7  C14    H142    SING  N  N  39  
DM7  C15    C16     DOUB  Y  N  40  
DM7  C17    C18     SING  Y  N  41  
DM7  C19    C20     DOUB  Y  N  42  
DM7  C21    O4      SING  N  N  43  
DM7  C21    H211    SING  N  N  44  
DM7  C21    H212    SING  N  N  45  
DM7  C21    H213    SING  N  N  46  
DM7  O6     HO6     SING  N  N  47  
DM7  O7     "C1'"   SING  N  N  48  
DM7  O9     HO9     SING  N  N  49  
DM7  O11    HO11    SING  N  N  50  
DM7  O14    HO14    SING  N  N  51  
DM7  "C1'"  "C2'"   SING  N  N  52  
DM7  "C1'"  "O5'"   SING  N  N  53  
DM7  "C1'"  "H1'"   SING  N  N  54  
DM7  "C2'"  "C3'"   SING  N  N  55  
DM7  "C2'"  "H2'1"  SING  N  N  56  
DM7  "C2'"  "H2'2"  SING  N  N  57  
DM7  "C3'"  "C4'"   SING  N  N  58  
DM7  "C3'"  "N3'"   SING  N  N  59  
DM7  "C3'"  "H3'"   SING  N  N  60  
DM7  "C4'"  "C5'"   SING  N  N  61  
DM7  "C4'"  "I4'"   SING  N  N  62  
DM7  "C4'"  "H4'"   SING  N  N  63  
DM7  "C5'"  "C6'"   SING  N  N  64  
DM7  "C5'"  "O5'"   SING  N  N  65  
DM7  "C5'"  "H5'"   SING  N  N  66  
DM7  "C6'"  "H6'1"  SING  N  N  67  
DM7  "C6'"  "H6'2"  SING  N  N  68  
DM7  "C6'"  "H6'3"  SING  N  N  69  
DM7  "N3'"  "HN'1"  SING  N  N  70  
DM7  "N3'"  "HN'2"  SING  N  N  71  
DM7  "N3'"  "HN'3"  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DM7  SMILES            ACDLabs               10.04  "O=C2c1c(O)c5c(c(O)c1C(=O)c3cccc(OC)c23)CC(O)(C(=O)CO)CC5OC4OC(C(I)C(C4)[NH3+])C"  
DM7  SMILES_CANONICAL  CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@H]([NH3+])[C@H](I)[C@H](C)O5)c4c(O)c3C(=O)c12)C(=O)CO"  
DM7  SMILES            CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH]([NH3+])[CH](I)[CH](C)O5)c4c(O)c3C(=O)c12)C(=O)CO"  
DM7  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)[NH3+])I"  
DM7  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)[NH3+])I"  
DM7  InChI             InChI                 1.03   "InChI=1S/C27H28INO10/c1-10-22(28)13(29)6-17(38-10)39-15-8-27(36,16(31)9-30)7-12-19(15)26(35)21-20(24(12)33)23(32)11-4-3-5-14(37-2)18(11)25(21)34/h3-5,10,13,15,17,22,30,33,35-36H,6-9,29H2,1-2H3/p+1/t10-,13-,15-,17-,22+,27-/m0/s1"  
DM7  InChIKey          InChI                 1.03   PDQGEKGUTOTUNV-TZSSRYMLSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DM7  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3S,4S,6R)-3-iodo-2-methyl-6-{[(1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl]oxy}tetrahydro-2H-pyran-4-aminium"  
DM7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2S,3S,4S,6R)-3-iodo-2-methyl-6-[[(1S,3S)-3,5,12-trihydroxy-3-(2-hydroxyethanoyl)-10-methoxy-6,11-dioxo-2,4-dihydro-1H-tetracen-1-yl]oxy]oxan-4-yl]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DM7  "Create component"   1999-07-08  RCSB  
DM7  "Modify descriptor"  2011-06-04  RCSB  
DM7  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DM7
_pdbx_chem_comp_synonyms.name        "4'-DEOXY-4'-IODOADRIAMYCIN"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
