data_MM7
# 
_chem_comp.id                                    MM7 
_chem_comp.name                                  "(1R)-1,4-anhydro-2-deoxy-1-(2-methoxy-4-methylphenyl)-5-O-phosphono-D-erythro-pentitol" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C13 H19 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-08-19 
_chem_comp.pdbx_modified_date                    2012-06-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        318.260 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MM7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2LHO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MM7 P      P      P 0 1 N N N -1.740 -9.985  19.945 4.440  0.831  0.255  P      MM7 1  
MM7 C1     C1     C 0 1 Y N N -3.016 -5.276  17.678 -2.274 0.111  0.028  C1     MM7 2  
MM7 O1     O1     O 0 1 N N N -4.298 -4.005  16.501 -3.822 -1.332 1.115  O1     MM7 3  
MM7 C2     C2     C 0 1 Y N N -1.938 -5.434  18.238 -2.011 1.297  -0.631 C2     MM7 4  
MM7 C3     C3     C 0 1 Y N N -1.121 -4.515  18.255 -3.029 2.205  -0.854 C3     MM7 5  
MM7 C4     C4     C 0 1 Y N N -1.403 -3.420  17.737 -4.312 1.931  -0.419 C4     MM7 6  
MM7 C5     C5     C 0 1 Y N N -2.496 -3.243  17.220 -4.581 0.747  0.241  C5     MM7 7  
MM7 C6     C6     C 0 1 Y N N -3.286 -4.179  17.151 -3.561 -0.167 0.466  C6     MM7 8  
MM7 C7     C7     C 0 1 N N N -0.505 -2.455  17.673 -5.419 2.924  -0.663 C7     MM7 9  
MM7 C8     C8     C 0 1 N N N -5.224 -3.347  17.084 -5.170 -1.551 1.537  C8     MM7 10 
MM7 "C1'"  "C1'"  C 0 1 N N R -3.799 -6.330  17.525 -1.166 -0.882 0.266  "C1'"  MM7 11 
MM7 OP2    OP2    O 0 1 N N N -2.188 -11.173 19.770 4.821  1.649  1.589  O1P    MM7 12 
MM7 "C2'"  "C2'"  C 0 1 N N N -3.297 -7.148  16.465 -1.099 -1.901 -0.893 "C2'"  MM7 13 
MM7 OP3    OP3    O 0 1 N Y N -0.481 -9.760  19.655 5.595  -0.246 -0.062 O2P    MM7 14 
MM7 "C3'"  "C3'"  C 0 1 N N S -3.862 -8.320  16.869 0.413  -2.156 -1.083 "C3'"  MM7 15 
MM7 "O3'"  "O3'"  O 0 1 N N N -4.864 -8.596  16.152 0.722  -3.531 -0.848 "O3'"  MM7 16 
MM7 "C4'"  "C4'"  C 0 1 N N R -4.219 -8.149  18.347 1.081  -1.260 -0.017 "C4'"  MM7 17 
MM7 "O4'"  "O4'"  O 0 1 N N N -3.897 -7.012  18.696 0.116  -0.218 0.247  "O4'"  MM7 18 
MM7 "C5'"  "C5'"  C 0 1 N N N -3.702 -9.049  19.246 2.380  -0.662 -0.562 "C5'"  MM7 19 
MM7 "O5'"  "O5'"  O 0 1 N N N -2.463 -9.103  19.091 3.040  0.067  0.475  "O5'"  MM7 20 
MM7 H2     H2     H 0 1 N N N -1.706 -6.375  18.714 -1.010 1.513  -0.972 H2     MM7 21 
MM7 H3     H3     H 0 1 N N N -0.157 -4.659  18.720 -2.821 3.132  -1.369 H3     MM7 22 
MM7 H5     H5     H 0 1 N N N -2.764 -2.273  16.828 -5.583 0.533  0.581  H5     MM7 23 
MM7 H17    H17    H 0 1 N N N 0.082  -2.561  16.749 -5.894 2.710  -1.621 H17    MM7 24 
MM7 H27    H27    H 0 1 N N N 0.165  -2.520  18.543 -6.159 2.847  0.134  H27    MM7 25 
MM7 H37    H37    H 0 1 N N N -1.014 -1.480  17.674 -5.005 3.932  -0.680 H37    MM7 26 
MM7 H18    H18    H 0 1 N N N -4.852 -2.346  17.349 -5.468 -0.760 2.224  H18    MM7 27 
MM7 H28    H28    H 0 1 N N N -5.531 -3.878  17.997 -5.828 -1.546 0.668  H28    MM7 28 
MM7 H38    H38    H 0 1 N N N -6.087 -3.250  16.408 -5.240 -2.516 2.040  H38    MM7 29 
MM7 "H1'"  "H1'"  H 0 1 N N N -4.814 -6.008  17.250 -1.314 -1.394 1.216  "H1'"  MM7 30 
MM7 "H12'" "H12'" H 0 0 N N N -3.618 -6.823  15.464 -1.611 -2.824 -0.620 "H12'" MM7 31 
MM7 "H22'" "H22'" H 0 0 N N N -2.199 -7.180  16.412 -1.535 -1.479 -1.799 "H22'" MM7 32 
MM7 "H3'"  "H3'"  H 0 1 N N N -3.172 -9.169  16.755 0.727  -1.858 -2.083 "H3'"  MM7 33 
MM7 "H4'"  "H4'"  H 0 1 N N N -5.301 -8.342  18.382 1.278  -1.832 0.890  "H4'"  MM7 34 
MM7 "H15'" "H15'" H 0 0 N N N -3.934 -8.725  20.271 3.030  -1.463 -0.913 "H15'" MM7 35 
MM7 "H25'" "H25'" H 0 0 N N N -4.142 -10.042 19.072 2.151  0.010  -1.389 "H25'" MM7 36 
MM7 HOP2   HOP2   H 0 0 N N N -1.465 -11.789 19.781 5.655  2.134  1.528  HO1P   MM7 37 
MM7 HOP3   HOP3   H 0 0 N N N 0.009  -10.572 19.718 5.731  -0.895 0.642  HO2P   MM7 38 
MM7 "HO3'" "HO3'" H 0 0 N Y N -5.247 -9.414  16.445 0.280  -4.142 -1.452 "HO3'" MM7 39 
MM7 OP1    OP1    O 0 1 N N N -0.701 -11.024 19.945 4.316  1.770  -0.882 O7     MM7 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MM7 C1     C2     SING Y N 1  
MM7 O1     C8     SING N N 2  
MM7 O1     C6     SING N N 3  
MM7 C2     C3     DOUB Y N 4  
MM7 C2     H2     SING N N 5  
MM7 C3     H3     SING N N 6  
MM7 C4     C3     SING Y N 7  
MM7 C5     C4     DOUB Y N 8  
MM7 C6     C1     DOUB Y N 9  
MM7 C6     C5     SING Y N 10 
MM7 C7     C4     SING N N 11 
MM7 C7     H17    SING N N 12 
MM7 C7     H37    SING N N 13 
MM7 C8     H38    SING N N 14 
MM7 C8     H28    SING N N 15 
MM7 "C1'"  C1     SING N N 16 
MM7 "C1'"  "O4'"  SING N N 17 
MM7 OP2    P      SING N N 18 
MM7 OP2    HOP2   SING N N 19 
MM7 "C2'"  "C1'"  SING N N 20 
MM7 "C2'"  "H12'" SING N N 21 
MM7 "C2'"  "C3'"  SING N N 22 
MM7 OP3    P      SING N N 23 
MM7 OP3    HOP3   SING N N 24 
MM7 "C3'"  "C4'"  SING N N 25 
MM7 "O3'"  "C3'"  SING N N 26 
MM7 "O3'"  "HO3'" SING N N 27 
MM7 "C4'"  "H4'"  SING N N 28 
MM7 "C4'"  "O4'"  SING N N 29 
MM7 "C4'"  "C5'"  SING N N 30 
MM7 "C5'"  "H15'" SING N N 31 
MM7 "O5'"  P      SING N N 32 
MM7 "O5'"  "C5'"  SING N N 33 
MM7 H5     C5     SING N N 34 
MM7 H27    C7     SING N N 35 
MM7 H18    C8     SING N N 36 
MM7 "H1'"  "C1'"  SING N N 37 
MM7 "H22'" "C2'"  SING N N 38 
MM7 "H3'"  "C3'"  SING N N 39 
MM7 "H25'" "C5'"  SING N N 40 
MM7 P      OP1    DOUB N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MM7 SMILES           ACDLabs              12.01 "O=P(O)(OCC2OC(c1ccc(cc1OC)C)CC2O)O"                                                                                                         
MM7 InChI            InChI                1.03  "InChI=1S/C13H19O7P/c1-8-3-4-9(11(5-8)18-2)12-6-10(14)13(20-12)7-19-21(15,16)17/h3-5,10,12-14H,6-7H2,1-2H3,(H2,15,16,17)/t10-,12+,13+/m0/s1" 
MM7 InChIKey         InChI                1.03  IYWLAEKOIQXEIN-CYZMBNFOSA-N                                                                                                                  
MM7 SMILES_CANONICAL CACTVS               3.370 "COc1cc(C)ccc1[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2"                                                                                        
MM7 SMILES           CACTVS               3.370 "COc1cc(C)ccc1[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                            
MM7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1ccc(c(c1)OC)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"                                                                                        
MM7 SMILES           "OpenEye OEToolkits" 1.7.2 "Cc1ccc(c(c1)OC)C2CC(C(O2)COP(=O)(O)O)O"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MM7 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R)-1,4-anhydro-2-deoxy-1-(2-methoxy-4-methylphenyl)-5-O-phosphono-D-erythro-pentitol"       
MM7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,5R)-5-(2-methoxy-4-methyl-phenyl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MM7 "Create component" 2011-08-19 RCSB 
# 
