data_VB7
# 
_chem_comp.id                                    VB7 
_chem_comp.name                                  "{(1R,2S,4R)-4-[(5-{4-[(1R)-3,4-dihydro-1H-2-benzopyran-1-yl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2-hydroxycyclopentyl}methyl sulfamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 N4 O6 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-07-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        530.616 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VB7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6XOH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VB7 C5  C1  C 0 1 Y N N N N N 39.870 -2.159  26.847 0.403  5.415  -0.980 C5  VB7 1  
VB7 C7  C2  C 0 1 Y N N N N N 39.794 -2.962  29.028 -1.370 4.671  0.285  C7  VB7 2  
VB7 C8  C3  C 0 1 Y N N N N N 38.571 -3.542  28.714 -0.750 3.424  0.403  C8  VB7 3  
VB7 C13 C4  C 0 1 Y N N N N N 40.200 -6.102  32.121 -3.198 -0.720 0.121  C13 VB7 4  
VB7 C17 C5  C 0 1 Y N N N N N 41.523 -8.222  31.802 -5.450 -1.678 0.358  C17 VB7 5  
VB7 C20 C6  C 0 1 N N N N N N 44.079 -6.867  31.938 -4.385 -4.215 -0.048 C20 VB7 6  
VB7 C22 C7  C 0 1 Y N N N N N 40.325 -8.942  31.926 -5.964 -0.457 0.766  C22 VB7 7  
VB7 C24 C8  C 0 1 Y N N N N N 41.329 -10.820 30.792 -8.149 -1.133 0.067  C24 VB7 8  
VB7 C26 C9  C 0 1 N N N N N N 34.826 -3.017  26.036 2.793  0.427  -1.043 C26 VB7 9  
VB7 C28 C10 C 0 1 N N S N N N 34.118 -4.931  24.674 4.437  1.060  0.616  C28 VB7 10 
VB7 C23 C11 C 0 1 Y N N N N N 40.228 -10.239 31.428 -7.310 -0.184 0.621  C23 VB7 11 
VB7 C25 C12 C 0 1 Y N N N N N 42.530 -10.107 30.679 -7.639 -2.351 -0.336 C25 VB7 12 
VB7 C18 C13 C 0 1 Y N N N N N 42.657 -8.801  31.180 -6.287 -2.623 -0.196 C18 VB7 13 
VB7 C19 C14 C 0 1 N N N N N N 44.035 -8.103  31.006 -5.764 -3.959 -0.659 C19 VB7 14 
VB7 O21 O1  O 0 1 N N N N N N 42.774 -6.125  31.878 -3.572 -3.054 -0.255 O21 VB7 15 
VB7 C16 C15 C 0 1 N N R N N N 41.579 -6.791  32.378 -3.977 -1.940 0.539  C16 VB7 16 
VB7 C12 C16 C 0 1 Y N N N N N 39.818 -5.549  30.935 -2.700 0.183  1.029  C12 VB7 17 
VB7 C14 C17 C 0 1 Y N N N N N 39.261 -6.043  33.086 -2.936 -0.439 -1.162 C14 VB7 18 
VB7 S15 S1  S 0 1 Y N N N N N 37.886 -5.248  32.436 -2.038 1.005  -1.300 S15 VB7 19 
VB7 C11 C18 C 0 1 Y N N N N N 38.569 -5.014  30.924 -2.023 1.220  0.445  C11 VB7 20 
VB7 C9  C19 C 0 1 N N N N N N 37.823 -4.319  29.741 -1.386 2.329  1.159  C9  VB7 21 
VB7 O10 O2  O 0 1 N N N N N N 36.609 -4.435  29.571 -1.382 2.346  2.377  O10 VB7 22 
VB7 N6  N1  N 0 1 Y N N N N N 40.427 -2.281  28.067 -0.769 5.622  -0.410 N6  VB7 23 
VB7 N4  N2  N 0 1 Y N N N N N 38.694 -2.721  26.539 1.032  4.261  -0.895 N4  VB7 24 
VB7 C3  C20 C 0 1 Y N N N N N 38.000 -3.432  27.428 0.502  3.245  -0.221 C3  VB7 25 
VB7 N2  N3  N 0 1 N N N N N N 36.806 -3.995  27.175 1.165  2.038  -0.134 N2  VB7 26 
VB7 C1  C21 C 0 1 N N R N N N 36.024 -3.961  25.895 2.514  1.902  -0.688 C1  VB7 27 
VB7 C29 C22 C 0 1 N N N N N N 35.319 -5.341  25.577 3.560  2.304  0.367  C29 VB7 28 
VB7 O32 O3  O 0 1 N N N N N N 34.388 -4.930  23.229 5.801  1.441  0.808  O32 VB7 29 
VB7 C27 C23 C 0 1 N N R N N N 33.815 -3.443  24.984 4.285  0.221  -0.681 C27 VB7 30 
VB7 C30 C24 C 0 1 N N N N N N 32.374 -3.249  25.450 4.580  -1.256 -0.409 C30 VB7 31 
VB7 O31 O4  O 0 1 N N N N N N 31.439 -3.500  24.407 5.960  -1.411 -0.071 O31 VB7 32 
VB7 S33 S2  S 0 1 N N N N N N 30.071 -4.071  24.644 6.368  -2.848 0.221  S33 VB7 33 
VB7 O35 O5  O 0 1 N N N N N N 29.309 -4.144  23.366 7.694  -2.793 0.728  O35 VB7 34 
VB7 O36 O6  O 0 1 N N N N N N 30.286 -5.406  25.244 5.287  -3.435 0.933  O36 VB7 35 
VB7 N34 N4  N 0 1 N N N N N N 29.251 -2.972  25.532 6.454  -3.638 -1.231 N34 VB7 36 
VB7 H1  H1  H 0 1 N N N N N N 40.389 -1.589  26.091 0.861  6.218  -1.539 H1  VB7 37 
VB7 H2  H2  H 0 1 N N N N N N 40.219 -3.058  30.016 -2.329 4.853  0.746  H2  VB7 38 
VB7 H3  H3  H 0 1 N N N N N N 44.262 -7.197  32.971 -4.487 -4.401 1.021  H3  VB7 39 
VB7 H4  H4  H 0 1 N N N N N N 44.892 -6.199  31.617 -3.927 -5.080 -0.528 H4  VB7 40 
VB7 H5  H5  H 0 1 N N N N N N 39.473 -8.488  32.410 -5.309 0.284  1.200  H5  VB7 41 
VB7 H6  H6  H 0 1 N N N N N N 41.254 -11.819 30.388 -9.202 -0.924 -0.046 H6  VB7 42 
VB7 H7  H7  H 0 1 N N N N N N 35.139 -1.977  25.863 2.161  -0.235 -0.450 H7  VB7 43 
VB7 H8  H8  H 0 1 N N N N N N 34.389 -3.106  27.041 2.631  0.254  -2.107 H8  VB7 44 
VB7 H9  H9  H 0 1 N N N N N N 33.241 -5.551  24.913 4.071  0.501  1.477  H9  VB7 45 
VB7 H10 H10 H 0 1 N N N N N N 39.307 -10.793 31.533 -7.706 0.768  0.940  H10 VB7 46 
VB7 H11 H11 H 0 1 N N N N N N 43.377 -10.572 30.196 -8.295 -3.093 -0.768 H11 VB7 47 
VB7 H12 H12 H 0 1 N N N N N N 44.841 -8.801  31.276 -5.685 -3.961 -1.746 H12 VB7 48 
VB7 H13 H13 H 0 1 N N N N N N 44.161 -7.784  29.961 -6.451 -4.746 -0.345 H13 VB7 49 
VB7 H14 H14 H 0 1 N N N N N N 41.681 -6.891  33.469 -3.775 -2.155 1.588  H14 VB7 50 
VB7 H15 H15 H 0 1 N N N N N N 40.461 -5.537  30.067 -2.830 0.086  2.096  H15 VB7 51 
VB7 H16 H16 H 0 1 N N N N N N 39.357 -6.428  34.091 -3.250 -1.047 -1.998 H16 VB7 52 
VB7 H17 H17 H 0 1 N N N N N N 36.191 -3.603  27.859 0.737  1.280  0.294  H17 VB7 53 
VB7 H18 H18 H 0 1 N N N N N N 36.660 -3.659  25.049 2.618  2.526  -1.575 H18 VB7 54 
VB7 H19 H19 H 0 1 N N N N N N 34.970 -5.827  26.500 3.063  2.601  1.291  H19 VB7 55 
VB7 H20 H20 H 0 1 N N N N N N 36.001 -6.018  25.042 4.172  3.124  -0.008 H20 VB7 56 
VB7 H21 H21 H 0 1 N N N N N N 34.587 -5.814  22.943 5.954  1.967  1.604  H21 VB7 57 
VB7 H22 H22 H 0 1 N N N N N N 33.978 -2.853  24.070 4.933  0.604  -1.468 H22 VB7 58 
VB7 H23 H23 H 0 1 N N N N N N 32.249 -2.213  25.797 3.961  -1.604 0.418  H23 VB7 59 
VB7 H24 H24 H 0 1 N N N N N N 32.173 -3.941  26.281 4.357  -1.841 -1.301 H24 VB7 60 
VB7 H25 H25 H 0 1 N N N N N N 29.699 -2.858  26.419 7.077  -4.373 -1.347 H25 VB7 61 
VB7 H26 H26 H 0 1 N N N N N N 29.239 -2.096  25.050 5.883  -3.366 -1.966 H26 VB7 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VB7 O32 C28 SING N N 1  
VB7 O35 S33 DOUB N N 2  
VB7 O31 S33 SING N N 3  
VB7 O31 C30 SING N N 4  
VB7 S33 O36 DOUB N N 5  
VB7 S33 N34 SING N N 6  
VB7 C28 C27 SING N N 7  
VB7 C28 C29 SING N N 8  
VB7 C27 C30 SING N N 9  
VB7 C27 C26 SING N N 10 
VB7 C29 C1  SING N N 11 
VB7 C1  C26 SING N N 12 
VB7 C1  N2  SING N N 13 
VB7 N4  C5  DOUB Y N 14 
VB7 N4  C3  SING Y N 15 
VB7 C5  N6  SING Y N 16 
VB7 N2  C3  SING N N 17 
VB7 C3  C8  DOUB Y N 18 
VB7 N6  C7  DOUB Y N 19 
VB7 C8  C7  SING Y N 20 
VB7 C8  C9  SING N N 21 
VB7 O10 C9  DOUB N N 22 
VB7 C9  C11 SING N N 23 
VB7 C25 C24 DOUB Y N 24 
VB7 C25 C18 SING Y N 25 
VB7 C24 C23 SING Y N 26 
VB7 C11 C12 DOUB Y N 27 
VB7 C11 S15 SING Y N 28 
VB7 C12 C13 SING Y N 29 
VB7 C19 C18 SING N N 30 
VB7 C19 C20 SING N N 31 
VB7 C18 C17 DOUB Y N 32 
VB7 C23 C22 DOUB Y N 33 
VB7 C17 C22 SING Y N 34 
VB7 C17 C16 SING N N 35 
VB7 O21 C20 SING N N 36 
VB7 O21 C16 SING N N 37 
VB7 C13 C16 SING N N 38 
VB7 C13 C14 DOUB Y N 39 
VB7 S15 C14 SING Y N 40 
VB7 C5  H1  SING N N 41 
VB7 C7  H2  SING N N 42 
VB7 C20 H3  SING N N 43 
VB7 C20 H4  SING N N 44 
VB7 C22 H5  SING N N 45 
VB7 C24 H6  SING N N 46 
VB7 C26 H7  SING N N 47 
VB7 C26 H8  SING N N 48 
VB7 C28 H9  SING N N 49 
VB7 C23 H10 SING N N 50 
VB7 C25 H11 SING N N 51 
VB7 C19 H12 SING N N 52 
VB7 C19 H13 SING N N 53 
VB7 C16 H14 SING N N 54 
VB7 C12 H15 SING N N 55 
VB7 C14 H16 SING N N 56 
VB7 N2  H17 SING N N 57 
VB7 C1  H18 SING N N 58 
VB7 C29 H19 SING N N 59 
VB7 C29 H20 SING N N 60 
VB7 O32 H21 SING N N 61 
VB7 C27 H22 SING N N 62 
VB7 C30 H23 SING N N 63 
VB7 C30 H24 SING N N 64 
VB7 N34 H25 SING N N 65 
VB7 N34 H26 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VB7 SMILES           ACDLabs              12.01 "c4ncc(C(c3cc(C2c1ccccc1CCO2)cs3)=O)c(n4)NC5CC(C(C5)O)COS(=O)(N)=O"                                                                                                                                                                    
VB7 InChI            InChI                1.03  "InChI=1S/C24H26N4O6S2/c25-36(31,32)34-11-15-7-17(9-20(15)29)28-24-19(10-26-13-27-24)22(30)21-8-16(12-35-21)23-18-4-2-1-3-14(18)5-6-33-23/h1-4,8,10,12-13,15,17,20,23,29H,5-7,9,11H2,(H2,25,31,32)(H,26,27,28)/t15-,17-,20+,23+/m1/s1" 
VB7 InChIKey         InChI                1.03  HKKCQZRJLCIYQD-NPDZVAPOSA-N                                                                                                                                                                                                            
VB7 SMILES_CANONICAL CACTVS               3.385 "N[S](=O)(=O)OC[C@H]1C[C@H](C[C@@H]1O)Nc2ncncc2C(=O)c3scc(c3)[C@@H]4OCCc5ccccc45"                                                                                                                                                      
VB7 SMILES           CACTVS               3.385 "N[S](=O)(=O)OC[CH]1C[CH](C[CH]1O)Nc2ncncc2C(=O)c3scc(c3)[CH]4OCCc5ccccc45"                                                                                                                                                            
VB7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCO[C@H]2c3cc(sc3)C(=O)c4cncnc4N[C@@H]5C[C@@H]([C@H](C5)O)COS(=O)(=O)N"                                                                                                                                                    
VB7 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCOC2c3cc(sc3)C(=O)c4cncnc4NC5CC(C(C5)O)COS(=O)(=O)N"                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VB7 "SYSTEMATIC NAME" ACDLabs              12.01 "{(1R,2S,4R)-4-[(5-{4-[(1R)-3,4-dihydro-1H-2-benzopyran-1-yl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2-hydroxycyclopentyl}methyl sulfamate"                 
VB7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{R},2~{S},4~{R})-4-[[5-[4-[(1~{R})-3,4-dihydro-1~{H}-isochromen-1-yl]thiophen-2-yl]carbonylpyrimidin-4-yl]amino]-2-oxidanyl-cyclopentyl]methyl sulfamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VB7 "Create component" 2020-07-22 RCSB 
VB7 "Initial release"  2021-03-24 RCSB 
VB7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VB7 
_pdbx_chem_comp_pcm.modified_residue_id                GLY 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               N34 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   C 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
