data_XT7
#

_chem_comp.id                                   XT7
_chem_comp.name                                 "5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1S,3R)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H36 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-12
_chem_comp.pdbx_modified_date                   2021-02-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       504.687
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XT7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LBR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XT7  C01  C1   C  0  1  N  N  N   1.785  11.923  32.015   -1.471   1.367  -2.696  C01  XT7   1  
XT7  C02  C2   C  0  1  N  N  R   1.641  11.773  33.577   -1.475   0.989  -1.214  C02  XT7   2  
XT7  N03  N1   N  0  1  N  N  N   1.971  10.393  33.926   -2.855   0.791  -0.764  N03  XT7   3  
XT7  C04  C3   C  0  1  N  N  N   1.679   9.713  35.098   -3.591   1.847  -0.363  C04  XT7   4  
XT7  C05  C4   C  0  1  Y  N  N   2.048   8.350  35.407   -4.984   1.647   0.091  C05  XT7   5  
XT7  C06  C5   C  0  1  Y  N  N   1.088   7.372  35.296   -5.707   2.715   0.624  C06  XT7   6  
XT7  C07  C6   C  0  1  N  N  N  -0.257   7.696  34.828   -5.068   4.075   0.737  C07  XT7   7  
XT7  C08  C7   C  0  1  Y  N  N   1.410   6.072  35.641   -7.007   2.526   1.046  C08  XT7   8  
XT7  C09  C8   C  0  1  Y  N  N   2.637   5.680  36.085   -7.598   1.281   0.945  C09  XT7   9  
XT7  C10  C9   C  0  1  Y  N  N   3.699   6.599  36.246   -6.886   0.210   0.417  C10  XT7  10  
XT7  N11  N2   N  0  1  N  N  N   4.962   6.086  36.740   -7.487  -1.047   0.317  N11  XT7  11  
XT7  C12  C10  C  0  1  N  N  N   6.298   6.592  36.745   -8.868  -1.236   0.768  C12  XT7  12  
XT7  C13  C11  C  0  1  N  N  N   6.848   7.250  35.421   -9.209  -2.694   1.126  C13  XT7  13  
XT7  N14  N3   N  0  1  N  N  N   7.549   6.030  35.225   -9.624  -2.841  -0.286  N14  XT7  14  
XT7  C15  C12  C  0  1  N  N  N   7.501   5.511  36.551   -9.881  -1.383  -0.382  C15  XT7  15  
XT7  C16  C13  C  0  1  Y  N  N   3.345   7.954  35.894   -5.581   0.391  -0.016  C16  XT7  16  
XT7  O17  O1   O  0  1  N  N  N   1.031  10.319  35.938   -3.110   2.963  -0.375  O17  XT7  17  
XT7  C18  C14  C  0  1  Y  N  N   2.483  12.766  34.373   -0.695  -0.286  -1.019  C18  XT7  18  
XT7  C19  C15  C  0  1  Y  N  N   3.875  12.736  34.292   -1.283  -1.505  -1.302  C19  XT7  19  
XT7  C20  C16  C  0  1  Y  N  N   4.649  13.644  35.029   -0.575  -2.680  -1.125  C20  XT7  20  
XT7  C21  C17  C  0  1  Y  N  N   4.072  14.567  35.878    0.725  -2.643  -0.666  C21  XT7  21  
XT7  C22  C18  C  0  1  Y  N  N   2.665  14.641  36.030    1.326  -1.416  -0.378  C22  XT7  22  
XT7  C23  C19  C  0  1  Y  N  N   1.988  15.616  36.902    2.718  -1.368   0.114  C23  XT7  23  
XT7  C24  C20  C  0  1  Y  N  N   2.371  16.496  37.832    3.507  -2.441   0.325  C24  XT7  24  
XT7  C25  C21  C  0  1  Y  N  N   1.339  17.305  38.451    4.772  -2.144   0.788  C25  XT7  25  
XT7  C26  C22  C  0  1  Y  N  N   0.084  17.094  38.019    5.023  -0.843   0.957  C26  XT7  26  
XT7  C27  C23  C  0  1  N  N  N  -1.294  17.696  38.371    6.325  -0.268   1.451  C27  XT7  27  
XT7  N28  N4   N  0  1  N  N  N  -1.904  18.624  37.333    7.207   0.001   0.307  N28  XT7  28  
XT7  C29  C24  C  0  1  N  N  S  -1.145  19.750  36.653    8.489   0.563   0.751  C29  XT7  29  
XT7  C30  C25  C  0  1  N  N  N  -0.980  19.485  35.120    9.514  -0.567   1.019  C30  XT7  30  
XT7  C31  C26  C  0  1  N  N  N  -1.699  20.650  34.399   10.873   0.160   0.866  C31  XT7  31  
XT7  C32  C27  C  0  1  N  N  R  -1.737  21.878  35.321   10.648   1.140  -0.303  C32  XT7  32  
XT7  O33  O2   O  0  1  N  N  N  -2.807  22.722  35.109   11.106   0.558  -1.525  O33  XT7  33  
XT7  C34  C28  C  0  1  N  N  N  -1.908  21.159  36.708    9.132   1.397  -0.377  C34  XT7  34  
XT7  S35  S1   S  0  1  Y  N  N   0.189  15.797  36.761    3.606   0.098   0.509  S35  XT7  35  
XT7  C36  C29  C  0  1  Y  N  N   1.951  13.705  35.236    0.607  -0.234  -0.564  C36  XT7  36  
XT7  H1   H1   H  0  1  N  N  N   1.542  12.955  31.721   -0.444   1.515  -3.031  H1   XT7  37  
XT7  H2   H2   H  0  1  N  N  N   2.819  11.691  31.718   -1.931   0.568  -3.276  H2   XT7  38  
XT7  H3   H3   H  0  1  N  N  N   1.095  11.227  31.515   -2.035   2.289  -2.837  H3   XT7  39  
XT7  H4   H4   H  0  1  N  N  N   0.585  11.954  33.825   -1.014   1.789  -0.633  H4   XT7  40  
XT7  H5   H5   H  0  1  N  N  N   2.470   9.874  33.232   -3.238  -0.100  -0.754  H5   XT7  41  
XT7  H6   H6   H  0  1  N  N  N  -0.299   7.594  33.734   -5.152   4.597  -0.217  H6   XT7  42  
XT7  H7   H7   H  0  1  N  N  N  -0.981   7.008  35.288   -5.573   4.651   1.512  H7   XT7  43  
XT7  H8   H8   H  0  1  N  N  N  -0.504   8.730  35.110   -4.015   3.962   0.997  H8   XT7  44  
XT7  H9   H9   H  0  1  N  N  N   0.640   5.320  35.553   -7.565   3.355   1.458  H9   XT7  45  
XT7  H10  H10  H  0  1  N  N  N   2.803   4.639  36.320   -8.615   1.140   1.277  H10  XT7  46  
XT7  H11  H11  H  0  1  N  N  N   4.777   5.923  37.709   -6.991  -1.794  -0.052  H11  XT7  47  
XT7  H12  H12  H  0  1  N  N  N   6.508   7.235  37.613   -9.169  -0.516   1.528  H12  XT7  48  
XT7  H13  H13  H  0  1  N  N  N   7.486   8.133  35.571   -8.339  -3.295   1.393  H13  XT7  49  
XT7  H14  H14  H  0  1  N  N  N   6.084   7.474  34.662  -10.028  -2.791   1.839  H14  XT7  50  
XT7  H15  H15  H  0  1  N  N  N   7.081   5.432  34.574   -8.843  -3.109  -0.867  H15  XT7  51  
XT7  H17  H17  H  0  1  N  N  N   7.205   4.455  36.634  -10.898  -1.098  -0.112  H17  XT7  52  
XT7  H18  H18  H  0  1  N  N  N   8.399   5.689  37.161   -9.549  -0.939  -1.321  H18  XT7  53  
XT7  H19  H19  H  0  1  N  N  N   4.100   8.719  36.003   -5.028  -0.439  -0.431  H19  XT7  54  
XT7  H20  H20  H  0  1  N  N  N   4.360  12.009  33.658   -2.301  -1.540  -1.662  H20  XT7  55  
XT7  H21  H21  H  0  1  N  N  N   5.724  13.621  34.930   -1.040  -3.629  -1.348  H21  XT7  56  
XT7  H22  H22  H  0  1  N  N  N   4.703  15.244  36.435    1.277  -3.560  -0.528  H22  XT7  57  
XT7  H23  H23  H  0  1  N  N  N   3.409  16.601  38.112    3.174  -3.452   0.145  H23  XT7  58  
XT7  H24  H24  H  0  1  N  N  N   1.566  18.034  39.215    5.506  -2.908   0.999  H24  XT7  59  
XT7  H25  H25  H  0  1  N  N  N  -1.183  18.265  39.306    6.132   0.662   1.986  H25  XT7  60  
XT7  H26  H26  H  0  1  N  N  N  -1.994  16.863  38.529    6.806  -0.980   2.121  H26  XT7  61  
XT7  H27  H27  H  0  1  N  N  N  -2.686  19.056  37.782    6.758   0.608  -0.362  H27  XT7  62  
XT7  H29  H29  H  0  1  N  N  N  -0.152  19.865  37.112    8.349   1.173   1.643  H29  XT7  63  
XT7  H30  H30  H  0  1  N  N  N  -1.442  18.525  34.847    9.398  -0.962   2.029  H30  XT7  64  
XT7  H31  H31  H  0  1  N  N  N   0.086  19.469  34.849    9.413  -1.363   0.281  H31  XT7  65  
XT7  H32  H32  H  0  1  N  N  N  -1.156  20.901  33.476   11.119   0.704   1.778  H32  XT7  66  
XT7  H33  H33  H  0  1  N  N  N  -2.727  20.348  34.149   11.661  -0.552   0.621  H33  XT7  67  
XT7  H34  H34  H  0  1  N  N  N  -0.771  22.404  35.292   11.176   2.075  -0.114  H34  XT7  68  
XT7  H35  H35  H  0  1  N  N  N  -2.759  23.453  35.714   12.051   0.352  -1.533  H35  XT7  69  
XT7  H36  H36  H  0  1  N  N  N  -1.476  21.783  37.504    8.746   1.077  -1.344  H36  XT7  70  
XT7  H37  H37  H  0  1  N  N  N  -2.977  20.994  36.910    8.925   2.456  -0.223  H37  XT7  71  
XT7  H38  H38  H  0  1  N  N  N   0.874  13.730  35.315    1.067   0.719  -0.347  H38  XT7  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XT7  C01  C02  SING  N  N   1  
XT7  C02  N03  SING  N  N   2  
XT7  C02  C18  SING  N  N   3  
XT7  N03  C04  SING  N  N   4  
XT7  C19  C18  DOUB  Y  N   5  
XT7  C19  C20  SING  Y  N   6  
XT7  C18  C36  SING  Y  N   7  
XT7  C31  C30  SING  N  N   8  
XT7  C31  C32  SING  N  N   9  
XT7  C07  C06  SING  N  N  10  
XT7  C20  C21  DOUB  Y  N  11  
XT7  C04  C05  SING  N  N  12  
XT7  C04  O17  DOUB  N  N  13  
XT7  O33  C32  SING  N  N  14  
XT7  C30  C29  SING  N  N  15  
XT7  N14  C13  SING  N  N  16  
XT7  N14  C15  SING  N  N  17  
XT7  C36  C22  DOUB  Y  N  18  
XT7  C06  C05  DOUB  Y  N  19  
XT7  C06  C08  SING  Y  N  20  
XT7  C32  C34  SING  N  N  21  
XT7  C05  C16  SING  Y  N  22  
XT7  C13  C12  SING  N  N  23  
XT7  C08  C09  DOUB  Y  N  24  
XT7  C21  C22  SING  Y  N  25  
XT7  C16  C10  DOUB  Y  N  26  
XT7  C22  C23  SING  N  N  27  
XT7  C09  C10  SING  Y  N  28  
XT7  C10  N11  SING  N  N  29  
XT7  C15  C12  SING  N  N  30  
XT7  C29  C34  SING  N  N  31  
XT7  C29  N28  SING  N  N  32  
XT7  N11  C12  SING  N  N  33  
XT7  S35  C23  SING  Y  N  34  
XT7  S35  C26  SING  Y  N  35  
XT7  C23  C24  DOUB  Y  N  36  
XT7  N28  C27  SING  N  N  37  
XT7  C24  C25  SING  Y  N  38  
XT7  C26  C27  SING  N  N  39  
XT7  C26  C25  DOUB  Y  N  40  
XT7  C01  H1   SING  N  N  41  
XT7  C01  H2   SING  N  N  42  
XT7  C01  H3   SING  N  N  43  
XT7  C02  H4   SING  N  N  44  
XT7  N03  H5   SING  N  N  45  
XT7  C07  H6   SING  N  N  46  
XT7  C07  H7   SING  N  N  47  
XT7  C07  H8   SING  N  N  48  
XT7  C08  H9   SING  N  N  49  
XT7  C09  H10  SING  N  N  50  
XT7  N11  H11  SING  N  N  51  
XT7  C12  H12  SING  N  N  52  
XT7  C13  H13  SING  N  N  53  
XT7  C13  H14  SING  N  N  54  
XT7  N14  H15  SING  N  N  55  
XT7  C15  H17  SING  N  N  56  
XT7  C15  H18  SING  N  N  57  
XT7  C16  H19  SING  N  N  58  
XT7  C19  H20  SING  N  N  59  
XT7  C20  H21  SING  N  N  60  
XT7  C21  H22  SING  N  N  61  
XT7  C24  H23  SING  N  N  62  
XT7  C25  H24  SING  N  N  63  
XT7  C27  H25  SING  N  N  64  
XT7  C27  H26  SING  N  N  65  
XT7  N28  H27  SING  N  N  66  
XT7  C29  H29  SING  N  N  67  
XT7  C30  H30  SING  N  N  68  
XT7  C30  H31  SING  N  N  69  
XT7  C31  H32  SING  N  N  70  
XT7  C31  H33  SING  N  N  71  
XT7  C32  H34  SING  N  N  72  
XT7  O33  H35  SING  N  N  73  
XT7  C34  H36  SING  N  N  74  
XT7  C34  H37  SING  N  N  75  
XT7  C36  H38  SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XT7  SMILES            ACDLabs               12.01  "CC(NC(c1cc(ccc1C)NC2CNC2)=O)c3cc(ccc3)c5ccc(CNC4CC(CC4)O)s5"  
XT7  InChI             InChI                 1.03   "InChI=1S/C29H36N4O2S/c1-18-6-7-23(33-24-15-30-16-24)14-27(18)29(35)32-19(2)20-4-3-5-21(12-20)28-11-10-26(36-28)17-31-22-8-9-25(34)13-22/h3-7,10-12,14,19,22,24-25,30-31,33-34H,8-9,13,15-17H2,1-2H3,(H,32,35)/t19-,22+,25-/m1/s1"  
XT7  InChIKey          InChI                 1.03   IGVYCVBUHQMNRZ-RZTXVSJASA-N  
XT7  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[C@H]5CC[C@@H](O)C5)cc4"  
XT7  SMILES            CACTVS                3.385  "C[CH](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[CH]5CC[CH](O)C5)cc4"  
XT7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc(c2)c3ccc(s3)CN[C@H]4CC[C@H](C4)O)NC5CNC5"  
XT7  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1C(=O)NC(C)c2cccc(c2)c3ccc(s3)CNC4CCC(C4)O)NC5CNC5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XT7  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1S,3R)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide"  
XT7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(1~{S},3~{R})-3-oxidanylcyclopentyl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XT7  "Create component"  2021-01-12  RCSB  
XT7  "Initial release"   2021-02-24  RCSB  
##
