data_YN7
#

_chem_comp.id                                   YN7
_chem_comp.name                                 "5-{(5S)-1-[2-({3-chloro-6-[(2S)-2,4-dimethylpiperazin-1-yl]-2-fluoropyridin-4-yl}amino)-2-oxoethyl]-4-oxo-4,6,7,8-tetrahydro-1H-dipyrrolo[1,2-a:2',3'-d]pyrimidin-3-yl}-3,4-difluoro-2-hydroxybenzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H28 Cl F3 N8 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2022-03-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       645.032
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YN7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LWG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YN7  C11   C1   C   0  1  Y  N  N  46.385   0.323  -36.492  -6.539   1.427  -1.389  C11   YN7   1  
YN7  C13   C2   C   0  1  Y  N  N  46.475  -0.033  -37.843  -5.273   1.753  -1.897  C13   YN7   2  
YN7  C02   C3   C   0  1  N  N  N  43.504  -2.541  -40.616  -3.050  -2.377   0.699  C02   YN7   3  
YN7  C04   C4   C   0  1  Y  N  N  43.591  -3.227  -39.251  -2.571  -1.089   1.014  C04   YN7   4  
YN7  C05   C5   C   0  1  Y  N  N  44.150  -2.916  -37.989  -3.028   0.280   0.749  C05   YN7   5  
YN7  C06   C6   C   0  1  Y  N  N  44.884  -1.812  -37.519  -4.245   0.681   0.001  C06   YN7   6  
YN7  C07   C7   C   0  1  Y  N  N  44.815  -1.438  -36.159  -5.511   0.364   0.504  C07   YN7   7  
YN7  C09   C8   C   0  1  Y  N  N  45.549  -0.404  -35.658  -6.648   0.736  -0.190  C09   YN7   8  
YN7  C14   C9   C   0  1  N  N  N  47.351   0.744  -38.833  -5.154   2.491  -3.167  C14   YN7   9  
YN7  C17   C10  C   0  1  Y  N  N  45.726  -1.086  -38.345  -4.126   1.376  -1.195  C17   YN7  10  
YN7  C18   C11  C   0  1  Y  N  N  43.913  -4.035  -37.161  -2.119   1.106   1.325  C18   YN7  11  
YN7  C20   C12  C   0  1  N  N  N  42.775  -6.251  -37.359   0.010   0.911   2.642  C20   YN7  12  
YN7  C21   C13  C   0  1  N  N  N  41.354  -6.274  -36.960   1.191   1.003   1.710  C21   YN7  13  
YN7  C23   C14  C   0  1  Y  N  N  39.790  -7.823  -35.739   3.491   1.462   1.331  C23   YN7  14  
YN7  C24   C15  C   0  1  Y  N  N  38.727  -7.722  -36.651   3.594   0.541   0.292  C24   YN7  15  
YN7  C25   C16  C   0  1  Y  N  N  37.496  -8.184  -36.215   4.725   0.554  -0.512  C25   YN7  16  
YN7  C27   C17  C   0  1  N  N  S  36.567  -7.732  -38.523   6.105  -0.180  -2.277  C27   YN7  17  
YN7  C28   C18  C   0  1  N  N  N  37.294  -8.842  -39.355   7.277  -0.461  -1.334  C28   YN7  18  
YN7  C29   C19  C   0  1  N  N  N  35.282  -7.358  -39.209   6.156  -1.151  -3.459  C29   YN7  19  
YN7  C31   C20  C   0  1  N  N  N  33.129  -7.944  -39.626   6.149  -3.496  -4.064  C31   YN7  20  
YN7  C32   C21  C   0  1  N  N  N  33.943  -8.451  -37.595   4.763  -2.710  -2.240  C32   YN7  21  
YN7  C33   C22  C   0  1  N  N  N  35.114  -8.695  -36.716   4.712  -1.740  -1.058  C33   YN7  22  
YN7  C35   C23  C   0  1  Y  N  N  38.324  -8.843  -34.204   5.632   2.317   0.678  C35   YN7  23  
YN7  C37   C24  C   0  1  Y  N  N  39.611  -8.421  -34.514   4.537   2.366   1.521  C37   YN7  24  
YN7  C40   C25  C   0  1  Y  N  N  42.995  -4.537  -39.083  -1.385  -0.971   1.749  C40   YN7  25  
YN7  C41   C26  C   0  1  N  N  N  42.198  -4.644  -41.384  -1.196  -3.280   1.830  C41   YN7  26  
YN7  C42   C27  C   0  1  N  N  N  41.595  -5.052  -42.482  -0.598  -4.634   2.173  C42   YN7  27  
YN7  C43   C28  C   0  1  N  N  N  41.605  -3.718  -43.472  -1.303  -5.618   1.214  C43   YN7  28  
YN7  C44   C29  C   0  1  N  N  N  42.504  -2.874  -43.002  -2.631  -4.885   0.928  C44   YN7  29  
YN7  F08   F1   F   0  1  N  N  N  43.983  -2.076  -35.259  -5.623  -0.307   1.671  F08   YN7  30  
YN7  F10   F2   F   0  1  N  N  N  45.467  -0.094  -34.338  -7.868   0.427   0.301  F10   YN7  31  
YN7  F36   F3   F   0  1  N  N  N  38.104  -9.420  -32.998   6.649   3.189   0.855  F36   YN7  32  
YN7  N01   N1   N   0  1  N  N  N  42.796  -3.293  -41.553  -2.342  -3.454   1.122  N01   YN7  33  
YN7  N16   N2   N   0  1  N  N  N  48.030   1.837  -38.319  -3.936   2.804  -3.653  N16   YN7  34  
YN7  N19   N3   N   0  1  Y  N  N  43.207  -4.955  -37.868  -1.140   0.360   1.921  N19   YN7  35  
YN7  N22   N4   N   0  1  N  N  N  41.126  -7.428  -36.156   2.367   1.485   2.158  N22   YN7  36  
YN7  N26   N5   N   0  1  N  N  N  36.366  -8.086  -37.118   4.839  -0.362  -1.552  N26   YN7  37  
YN7  N30   N6   N   0  1  N  N  N  34.217  -8.178  -38.908   6.029  -2.529  -2.965  N30   YN7  38  
YN7  N34   N7   N   0  1  Y  N  N  37.300  -8.740  -35.029   5.697   1.429  -0.299  N34   YN7  39  
YN7  N45   N8   N   0  1  N  N  N  42.310  -5.269  -40.140  -0.745  -2.088   2.128  N45   YN7  40  
YN7  O03   O1   O   0  1  N  N  N  43.960  -1.463  -40.878  -4.081  -2.520   0.064  O03   YN7  41  
YN7  O12   O2   O   0  1  N  N  N  47.136   1.360  -35.895  -7.657   1.791  -2.067  O12   YN7  42  
YN7  O15   O3   O   0  1  N  N  N  47.357   0.500  -39.987  -6.154   2.819  -3.776  O15   YN7  43  
YN7  O39   O4   O   0  1  N  N  N  40.520  -5.479  -37.301   1.082   0.643   0.557  O39   YN7  44  
YN7  CL38  CL1  CL  0  0  N  N  N  40.963  -8.655  -33.415   4.464   3.538   2.799  CL38  YN7  45  
YN7  H171  H1   H   0  0  N  N  N  45.800  -1.343  -39.391  -3.149   1.625  -1.582  H171  YN7  46  
YN7  H181  H2   H   0  0  N  N  N  44.239  -4.141  -36.137  -2.161   2.185   1.313  H181  YN7  47  
YN7  H202  H3   H   0  0  N  N  N  42.930  -7.005  -38.145   0.259   0.261   3.481  H202  YN7  48  
YN7  H201  H4   H   0  0  N  N  N  43.389  -6.505  -36.482  -0.237   1.906   3.014  H201  YN7  49  
YN7  H241  H5   H   0  0  N  N  N  38.862  -7.307  -37.639   2.804  -0.174   0.115  H241  YN7  50  
YN7  H271  H6   H   0  0  N  N  N  37.218  -6.846  -38.552   6.170   0.844  -2.644  H271  YN7  51  
YN7  H283  H7   H   0  0  N  N  N  38.235  -9.118  -38.856   7.212  -1.485  -0.968  H283  YN7  52  
YN7  H281  H8   H   0  0  N  N  N  36.646  -9.727  -39.430   8.216  -0.326  -1.872  H281  YN7  53  
YN7  H282  H9   H   0  0  N  N  N  37.512  -8.460  -40.363   7.239   0.230  -0.492  H282  YN7  54  
YN7  H292  H10  H   0  0  N  N  N  35.449  -7.395  -40.296   5.337  -0.933  -4.144  H292  YN7  55  
YN7  H291  H11  H   0  0  N  N  N  35.020  -6.331  -38.913   7.107  -1.038  -3.981  H291  YN7  56  
YN7  H312  H12  H   0  0  N  N  N  32.332  -8.639  -39.323   7.123  -3.384  -4.541  H312  YN7  57  
YN7  H311  H13  H   0  0  N  N  N  32.795  -6.909  -39.459   6.051  -4.507  -3.670  H311  YN7  58  
YN7  H313  H14  H   0  0  N  N  N  33.356  -8.089  -40.693   5.363  -3.313  -4.797  H313  YN7  59  
YN7  H322  H15  H   0  0  N  N  N  33.388  -7.595  -37.184   4.698  -3.734  -1.873  H322  YN7  60  
YN7  H321  H16  H   0  0  N  N  N  33.308  -9.349  -37.565   3.928  -2.510  -2.911  H321  YN7  61  
YN7  H332  H17  H   0  0  N  N  N  34.864  -8.315  -35.715   3.761  -1.852  -0.536  H332  YN7  62  
YN7  H331  H18  H   0  0  N  N  N  35.273  -9.782  -36.666   5.531  -1.958  -0.373  H331  YN7  63  
YN7  H421  H19  H   0  0  N  N  N  40.564  -5.370  -42.266   0.477  -4.632   1.994  H421  YN7  64  
YN7  H422  H20  H   0  0  N  N  N  42.146  -5.885  -42.944  -0.810  -4.892   3.210  H422  YN7  65  
YN7  H431  H21  H   0  0  N  N  N  40.612  -3.245  -43.473  -0.727  -5.751   0.299  H431  YN7  66  
YN7  H432  H22  H   0  0  N  N  N  41.870  -4.015  -44.497  -1.484  -6.575   1.703  H432  YN7  67  
YN7  H442  H23  H   0  0  N  N  N  43.423  -2.927  -43.604  -2.950  -5.069  -0.097  H442  YN7  68  
YN7  H441  H24  H   0  0  N  N  N  42.109  -1.848  -43.027  -3.400  -5.212   1.628  H441  YN7  69  
YN7  H161  H25  H   0  0  N  N  N  48.541   2.441  -38.931  -3.138   2.543  -3.167  H161  YN7  70  
YN7  H162  H26  H   0  0  N  N  N  48.009   2.022  -37.336  -3.858   3.290  -4.489  H162  YN7  71  
YN7  H221  H27  H   0  0  N  N  N  41.908  -7.983  -35.870   2.432   1.849   3.055  H221  YN7  72  
YN7  H121  H29  H   0  0  N  N  N  46.913   1.423  -34.974  -7.998   2.662  -1.824  H121  YN7  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YN7  C43  C44   SING  N  N   1  
YN7  C43  C42   SING  N  N   2  
YN7  C44  N01   SING  N  N   3  
YN7  C42  C41   SING  N  N   4  
YN7  N01  C41   SING  N  N   5  
YN7  N01  C02   SING  N  N   6  
YN7  C41  N45   DOUB  N  N   7  
YN7  O03  C02   DOUB  N  N   8  
YN7  C02  C04   SING  N  N   9  
YN7  N45  C40   SING  N  N  10  
YN7  O15  C14   DOUB  N  N  11  
YN7  C31  N30   SING  N  N  12  
YN7  C28  C27   SING  N  N  13  
YN7  C04  C40   DOUB  Y  N  14  
YN7  C04  C05   SING  Y  N  15  
YN7  C29  N30   SING  N  N  16  
YN7  C29  C27   SING  N  N  17  
YN7  C40  N19   SING  Y  N  18  
YN7  N30  C32   SING  N  N  19  
YN7  C14  N16   SING  N  N  20  
YN7  C14  C13   SING  N  N  21  
YN7  C27  N26   SING  N  N  22  
YN7  C17  C13   DOUB  Y  N  23  
YN7  C17  C06   SING  Y  N  24  
YN7  C05  C06   SING  N  N  25  
YN7  C05  C18   DOUB  Y  N  26  
YN7  N19  C20   SING  N  N  27  
YN7  N19  C18   SING  Y  N  28  
YN7  C13  C11   SING  Y  N  29  
YN7  C32  C33   SING  N  N  30  
YN7  C06  C07   DOUB  Y  N  31  
YN7  C20  C21   SING  N  N  32  
YN7  O39  C21   DOUB  N  N  33  
YN7  N26  C33   SING  N  N  34  
YN7  N26  C25   SING  N  N  35  
YN7  C21  N22   SING  N  N  36  
YN7  C24  C25   DOUB  Y  N  37  
YN7  C24  C23   SING  Y  N  38  
YN7  C11  O12   SING  N  N  39  
YN7  C11  C09   DOUB  Y  N  40  
YN7  C25  N34   SING  Y  N  41  
YN7  C07  C09   SING  Y  N  42  
YN7  C07  F08   SING  N  N  43  
YN7  N22  C23   SING  N  N  44  
YN7  C23  C37   DOUB  Y  N  45  
YN7  C09  F10   SING  N  N  46  
YN7  N34  C35   DOUB  Y  N  47  
YN7  C37  C35   SING  Y  N  48  
YN7  C37  CL38  SING  N  N  49  
YN7  C35  F36   SING  N  N  50  
YN7  C17  H171  SING  N  N  51  
YN7  C18  H181  SING  N  N  52  
YN7  C20  H202  SING  N  N  53  
YN7  C20  H201  SING  N  N  54  
YN7  C24  H241  SING  N  N  55  
YN7  C27  H271  SING  N  N  56  
YN7  C28  H283  SING  N  N  57  
YN7  C28  H281  SING  N  N  58  
YN7  C28  H282  SING  N  N  59  
YN7  C29  H292  SING  N  N  60  
YN7  C29  H291  SING  N  N  61  
YN7  C31  H312  SING  N  N  62  
YN7  C31  H311  SING  N  N  63  
YN7  C31  H313  SING  N  N  64  
YN7  C32  H322  SING  N  N  65  
YN7  C32  H321  SING  N  N  66  
YN7  C33  H332  SING  N  N  67  
YN7  C33  H331  SING  N  N  68  
YN7  C42  H421  SING  N  N  69  
YN7  C42  H422  SING  N  N  70  
YN7  C43  H431  SING  N  N  71  
YN7  C43  H432  SING  N  N  72  
YN7  C44  H442  SING  N  N  73  
YN7  C44  H441  SING  N  N  74  
YN7  N16  H161  SING  N  N  75  
YN7  N16  H162  SING  N  N  76  
YN7  N22  H221  SING  N  N  77  
YN7  O12  H121  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YN7  SMILES            ACDLabs               12.01  "CN1CC(C)N(CC1)c1nc(F)c(Cl)c(NC(=O)Cn2cc(c3cc(C(N)=O)c(O)c(F)c3F)c3C(=O)N4CCCC4=Nc32)c1"  
YN7  InChI             InChI                 1.03   "InChI=1S/C29H28ClF3N8O4/c1-13-10-38(2)6-7-40(13)19-9-17(22(30)26(33)36-19)35-20(42)12-39-11-16(14-8-15(27(34)44)25(43)24(32)23(14)31)21-28(39)37-18-4-3-5-41(18)29(21)45/h8-9,11,13,43H,3-7,10,12H2,1-2H3,(H2,34,44)(H,35,36,42)/t13-/m0/s1"  
YN7  InChIKey          InChI                 1.03   LGAFZGSECXDYIR-ZDUSSCGKSA-N  
YN7  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1CN(C)CCN1c2cc(NC(=O)Cn3cc(c4cc(C(N)=O)c(O)c(F)c4F)c5C(=O)N6CCCC6=Nc35)c(Cl)c(F)n2"  
YN7  SMILES            CACTVS                3.385  "C[CH]1CN(C)CCN1c2cc(NC(=O)Cn3cc(c4cc(C(N)=O)c(O)c(F)c4F)c5C(=O)N6CCCC6=Nc35)c(Cl)c(F)n2"  
YN7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1CN(CCN1c2cc(c(c(n2)F)Cl)NC(=O)Cn3cc(c4c3N=C5CCCN5C4=O)c6cc(c(c(c6F)F)O)C(=O)N)C"  
YN7  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CN(CCN1c2cc(c(c(n2)F)Cl)NC(=O)Cn3cc(c4c3N=C5CCCN5C4=O)c6cc(c(c(c6F)F)O)C(=O)N)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YN7  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-{(5S)-1-[2-({3-chloro-6-[(2S)-2,4-dimethylpiperazin-1-yl]-2-fluoropyridin-4-yl}amino)-2-oxoethyl]-4-oxo-4,6,7,8-tetrahydro-1H-dipyrrolo[1,2-a:2',3'-d]pyrimidin-3-yl}-3,4-difluoro-2-hydroxybenzamide"  
YN7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[6-[2-[[3-chloranyl-6-[(2~{S})-2,4-dimethylpiperazin-1-yl]-2-fluoranyl-pyridin-4-yl]amino]-2-oxidanylidene-ethyl]-2-oxidanylidene-1,6,8-triazatricyclo[7.3.0.0^{3,7}]dodeca-3(7),4,8-trien-4-yl]-3,4-bis(fluoranyl)-2-oxidanyl-benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YN7  "Create component"  2021-03-12  RCSB  
YN7  "Initial release"   2022-03-09  RCSB  
##
