data_CD8
# 
_chem_comp.id                                    CD8 
_chem_comp.name                                  "(2R)-2-[(1S)-1-(benzoylamino)-1-methoxy-2-oxoethyl]-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H16 N2 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        348.374 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CD8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VFF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CD8 CAA  CAA  C 0 1 N N N N N N 20.138 12.645 9.477  4.792  -1.383 -0.420 CAA  CD8 1  
CD8 CAC  CAC  C 0 1 N N N N N N 25.172 17.808 9.298  -0.131 2.212  2.766  CAC  CD8 2  
CD8 OAF  OAF  O 0 1 N N N N N N 21.771 11.034 9.592  3.342  -3.297 0.286  OAF  CD8 3  
CD8 OAG  OAG  O 0 1 N N N N N N 23.536 17.936 7.690  -1.559 0.899  -1.561 OAG  CD8 4  
CD8 OAH  OAH  O 0 1 N N N N N N 24.553 15.878 7.623  -1.409 3.161  -0.287 OAH  CD8 5  
CD8 OAI  OAI  O 0 1 N N N N N N 23.739 11.378 10.265 1.278  -3.049 1.055  OAI  CD8 6  
CD8 CAJ  CAJ  C 0 1 Y N N N N N 18.807 18.257 6.325  -5.429 -1.856 -0.105 CAJ  CD8 7  
CD8 CAK  CAK  C 0 1 Y N N N N N 19.115 16.974 6.730  -5.056 -1.360 -1.342 CAK  CD8 8  
CD8 CAL  CAL  C 0 1 Y N N N N N 19.733 19.269 6.501  -4.654 -1.599 1.012  CAL  CD8 9  
CD8 CAM  CAM  C 0 1 Y N N N N N 20.346 16.711 7.311  -3.908 -0.607 -1.469 CAM  CD8 10 
CD8 CAN  CAN  C 0 1 Y N N N N N 20.965 19.003 7.082  -3.503 -0.846 0.899  CAN  CD8 11 
CD8 CAO  CAO  C 0 1 N N N N N N 20.637 14.867 10.044 3.695  0.588  -1.429 CAO  CD8 12 
CD8 NAQ  NAQ  N 0 1 N N N N N N 23.348 13.899 10.624 1.302  -0.534 -0.030 NAQ  CD8 13 
CD8 NAS  NAS  N 0 1 N N N N N N 22.386 16.580 9.081  -1.132 0.715  0.611  NAS  CD8 14 
CD8 OAT  OAT  O 0 1 N N N N N N 24.199 17.406 10.256 0.712  1.641  1.763  OAT  CD8 15 
CD8 SAV  SAV  S 0 1 N N N N N N 21.498 15.695 11.388 2.605  1.763  -0.560 SAV  CD8 16 
CD8 CAX  CAX  C 0 1 N N N N N N 21.056 13.563 9.939  3.670  -0.701 -0.631 CAX  CD8 17 
CD8 CAY  CAY  C 0 1 N N N N N N 22.624 11.808 10.010 2.372  -2.582 0.427  CAY  CD8 18 
CD8 CAZ  CAZ  C 0 1 N N N N N N 22.489 17.429 8.072  -1.889 0.463  -0.475 CAZ  CD8 19 
CD8 CBA  CBA  C 0 1 N N N N N N 24.569 15.555 8.797  -0.259 2.883  -0.044 CBA  CD8 20 
CD8 CBB  CBB  C 0 1 N N N N N N 22.344 13.131 10.205 2.394  -1.189 -0.094 CBB  CD8 21 
CD8 CBC  CBC  C 0 1 Y N N N N N 21.275 17.719 7.481  -3.121 -0.344 -0.346 CBC  CD8 22 
CD8 CBE  CBE  C 0 1 N N R N N N 23.228 15.335 10.933 1.051  0.824  -0.486 CBE  CD8 23 
CD8 CBF  CBF  C 0 1 N N S N N N 23.606 16.226 9.765  0.089  1.514  0.483  CBF  CD8 24 
CD8 HAA  HAA  H 0 1 N N N N N N 20.430 11.616 9.330  5.706  -1.085 -0.912 HAA  CD8 25 
CD8 HAAA HAAA H 0 0 N N N N N N 19.126 12.955 9.261  4.791  -2.232 0.248  HAAA CD8 26 
CD8 HAC  HAC  H 0 1 N N N N N N 25.664 18.730 9.640  -0.510 3.173  2.417  HAC  CD8 27 
CD8 HACA HACA H 0 0 N N N N N N 25.923 17.013 9.183  -0.968 1.542  2.963  HACA CD8 28 
CD8 HACB HACB H 0 0 N N N N N N 24.681 17.991 8.331  0.441  2.358  3.682  HACB CD8 29 
CD8 HOAI HOAI H 0 0 N N N N N N 23.768 10.446 10.085 1.311  -3.960 1.377  HOAI CD8 30 
CD8 HAJ  HAJ  H 0 1 N N N N N N 17.849 18.469 5.874  -6.331 -2.442 -0.010 HAJ  CD8 31 
CD8 HAK  HAK  H 0 1 N N N N N N 18.399 16.177 6.595  -5.665 -1.565 -2.210 HAK  CD8 32 
CD8 HAL  HAL  H 0 1 N N N N N N 19.496 20.274 6.184  -4.951 -1.988 1.975  HAL  CD8 33 
CD8 HAM  HAM  H 0 1 N N N N N N 20.581 15.708 7.634  -3.618 -0.221 -2.435 HAM  CD8 34 
CD8 HAN  HAN  H 0 1 N N N N N N 21.680 19.800 7.222  -2.899 -0.646 1.771  HAN  CD8 35 
CD8 HAO  HAO  H 0 1 N N N N N N 20.847 15.392 9.101  3.323  0.409  -2.437 HAO  CD8 36 
CD8 HAOA HAOA H 0 0 N N N N N N 19.555 14.885 10.241 4.710  0.982  -1.470 HAOA CD8 37 
CD8 HNAS HNAS H 0 0 N N N N N N 21.503 16.201 9.357  -1.396 0.367  1.477  HNAS CD8 38 
CD8 HBA  HBA  H 0 1 N N N N N N 25.259 14.801 9.147  0.519  3.614  -0.203 HBA  CD8 39 
CD8 HBE  HBE  H 0 1 N N N N N N 23.839 15.591 11.811 0.600  0.794  -1.478 HBE  CD8 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CD8 CAA CAX  DOUB N N 1  
CD8 CAA HAA  SING N N 2  
CD8 CAA HAAA SING N N 3  
CD8 CAC OAT  SING N N 4  
CD8 CAC HAC  SING N N 5  
CD8 CAC HACA SING N N 6  
CD8 CAC HACB SING N N 7  
CD8 OAF CAY  DOUB N N 8  
CD8 OAG CAZ  DOUB N N 9  
CD8 OAH CBA  DOUB N N 10 
CD8 CAY OAI  SING N N 11 
CD8 OAI HOAI SING N N 12 
CD8 CAJ CAL  DOUB Y N 13 
CD8 CAJ CAK  SING Y N 14 
CD8 CAJ HAJ  SING N N 15 
CD8 CAK CAM  DOUB Y N 16 
CD8 CAK HAK  SING N N 17 
CD8 CAL CAN  SING Y N 18 
CD8 CAL HAL  SING N N 19 
CD8 CAM CBC  SING Y N 20 
CD8 CAM HAM  SING N N 21 
CD8 CAN CBC  DOUB Y N 22 
CD8 CAN HAN  SING N N 23 
CD8 CAX CAO  SING N N 24 
CD8 CAO SAV  SING N N 25 
CD8 CAO HAO  SING N N 26 
CD8 CAO HAOA SING N N 27 
CD8 CBB NAQ  DOUB N N 28 
CD8 NAQ CBE  SING N N 29 
CD8 CAZ NAS  SING N N 30 
CD8 NAS CBF  SING N N 31 
CD8 NAS HNAS SING N N 32 
CD8 CBF OAT  SING N N 33 
CD8 CBE SAV  SING N N 34 
CD8 CAX CBB  SING N N 35 
CD8 CAY CBB  SING N N 36 
CD8 CBC CAZ  SING N N 37 
CD8 CBA CBF  SING N N 38 
CD8 CBA HBA  SING N N 39 
CD8 CBF CBE  SING N N 40 
CD8 CBE HBE  SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CD8 SMILES           ACDLabs              12.01 "O=CC(OC)(NC(=O)c1ccccc1)C2N=C(C(=O)O)\C(=C)CS2"                                                                                                    
CD8 InChI            InChI                1.03  "InChI=1S/C16H16N2O5S/c1-10-8-24-15(17-12(10)14(21)22)16(9-19,23-2)18-13(20)11-6-4-3-5-7-11/h3-7,9,15H,1,8H2,2H3,(H,18,20)(H,21,22)/t15-,16+/m1/s1" 
CD8 InChIKey         InChI                1.03  DDPBNTJUSOYARI-CVEARBPZSA-N                                                                                                                         
CD8 SMILES_CANONICAL CACTVS               3.370 "CO[C@@](NC(=O)c1ccccc1)(C=O)[C@H]2SCC(=C)C(=N2)C(O)=O"                                                                                             
CD8 SMILES           CACTVS               3.370 "CO[C](NC(=O)c1ccccc1)(C=O)[CH]2SCC(=C)C(=N2)C(O)=O"                                                                                                
CD8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CO[C@@](C=O)([C@@H]1N=C(C(=C)CS1)C(=O)O)NC(=O)c2ccccc2"                                                                                            
CD8 SMILES           "OpenEye OEToolkits" 1.7.6 "COC(C=O)(C1N=C(C(=C)CS1)C(=O)O)NC(=O)c2ccccc2"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CD8 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-[(1S)-1-(benzoylamino)-1-methoxy-2-oxoethyl]-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" 
CD8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[(1S)-1-benzamido-1-methoxy-2-oxidanylidene-ethyl]-5-methylidene-2H-1,3-thiazine-4-carboxylic acid"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CD8 "Create component"         2012-01-12 RCSB 
CD8 "Modify leaving atom flag" 2012-01-19 RCSB 
CD8 "Other modification"       2012-01-20 RCSB 
CD8 "Initial release"          2012-09-14 RCSB 
CD8 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            CD8 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CBA 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
