data_DF8
# 
_chem_comp.id                                    DF8 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{R})-2-(6-azanyl-8-diazanyl-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "NEOMYCIN A; NEAMINE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-01-17 
_chem_comp.pdbx_modified_date                    2020-05-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        297.271 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DF8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6FI6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DF8 O3  O1  O 0 1 N N N -15.137 15.682 44.617 1.028  -2.315 -1.481 O3  DF8 1  
DF8 C4  C1  C 0 1 Y N N -16.683 13.771 41.684 -1.678 -0.567 0.326  C4  DF8 2  
DF8 C5  C2  C 0 1 N N R -15.577 15.969 42.257 0.855  -0.655 0.319  C5  DF8 3  
DF8 C6  C3  C 0 1 N N R -14.519 18.010 41.858 3.118  -0.244 0.594  C6  DF8 4  
DF8 N1  N1  N 0 1 N N N -13.346 14.476 40.884 0.354  2.174  -0.643 N1  DF8 5  
DF8 C7  C4  C 0 1 N N N -13.217 18.287 41.124 4.093  0.913  0.367  C7  DF8 6  
DF8 C8  C5  C 0 1 N N S -14.388 17.687 43.352 3.000  -1.089 -0.689 C8  DF8 7  
DF8 N2  N2  N 0 1 Y N N -14.909 12.742 40.681 -1.929 1.528  -0.377 N2  DF8 8  
DF8 C9  C6  C 0 1 N N R -14.583 16.165 43.398 1.493  -1.037 -1.041 C9  DF8 9  
DF8 N3  N3  N 0 1 N N N -16.867 10.380 40.362 -4.956 1.051  -0.164 N3  DF8 10 
DF8 N4  N4  N 0 1 Y N N -18.370 11.717 41.515 -4.317 -1.105 0.554  N4  DF8 11 
DF8 N   N5  N 0 1 N N N -12.538 13.953 39.851 0.032  3.435  -1.058 N   DF8 12 
DF8 C   C7  C 0 1 Y N N -14.592 13.954 41.078 -0.644 1.277  -0.321 C   DF8 13 
DF8 O   O2  O 0 1 N N N -15.170 16.870 41.250 1.807  0.268  0.890  O   DF8 14 
DF8 C1  C8  C 0 1 Y N N -16.243 12.616 41.053 -2.620 0.425  0.007  C1  DF8 15 
DF8 C2  C9  C 0 1 Y N N -17.149 11.549 40.962 -3.982 0.112  0.137  C2  DF8 16 
DF8 C3  C10 C 0 1 Y N N -18.657 12.884 42.104 -3.395 -2.005 0.844  C3  DF8 17 
DF8 N5  N6  N 0 1 Y N N -17.891 13.967 42.237 -2.106 -1.755 0.739  N5  DF8 18 
DF8 N6  N7  N 0 1 Y N N -15.612 14.634 41.689 -0.441 -0.003 0.115  N6  DF8 19 
DF8 O1  O3  O 0 1 N N N -12.284 17.225 41.276 4.285  1.622  1.593  O1  DF8 20 
DF8 O2  O4  O 0 1 N N N -15.402 18.352 44.092 3.409  -2.436 -0.440 O2  DF8 21 
DF8 H1  H1  H 0 1 N N N -14.512 15.808 45.321 1.399  -2.598 -2.328 H1  DF8 22 
DF8 H2  H2  H 0 1 N N N -16.580 16.238 42.620 0.746  -1.535 0.953  H2  DF8 23 
DF8 H3  H3  H 0 1 N N N -15.167 18.893 41.756 3.467  -0.867 1.418  H3  DF8 24 
DF8 H4  H4  H 0 1 N N N -12.842 14.357 41.739 1.285  1.909  -0.575 H4  DF8 25 
DF8 H5  H5  H 0 1 N N N -12.773 19.210 41.525 5.049  0.520  0.021  H5  DF8 26 
DF8 H6  H6  H 0 1 N N N -13.434 18.419 40.054 3.685  1.590  -0.384 H6  DF8 27 
DF8 H7  H7  H 0 1 N N N -13.382 17.950 43.709 3.595  -0.651 -1.490 H7  DF8 28 
DF8 H8  H8  H 0 1 N N N -13.635 15.661 43.160 1.296  -0.273 -1.792 H8  DF8 29 
DF8 H9  H9  H 0 1 N N N -17.660 9.774  40.422 -4.700 1.936  -0.468 H9  DF8 30 
DF8 H10 H10 H 0 1 N N N -16.645 10.544 39.401 -5.895 0.823  -0.071 H10 DF8 31 
DF8 H11 H11 H 0 1 N N N -11.662 14.435 39.836 -0.548 3.902  -0.377 H11 DF8 32 
DF8 H12 H12 H 0 1 N N N -12.380 12.979 40.013 0.862  3.973  -1.256 H12 DF8 33 
DF8 H13 H13 H 0 1 N N N -19.646 12.959 42.531 -3.710 -2.982 1.179  H13 DF8 34 
DF8 H14 H14 H 0 1 N N N -11.486 17.434 40.805 4.893  2.371  1.523  H14 DF8 35 
DF8 H15 H15 H 0 1 N N N -15.310 18.144 45.014 4.330  -2.521 -0.158 H15 DF8 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DF8 N  N1  SING N N 1  
DF8 N3 C2  SING N N 2  
DF8 N2 C1  SING Y N 3  
DF8 N2 C   DOUB Y N 4  
DF8 N1 C   SING N N 5  
DF8 C2 C1  DOUB Y N 6  
DF8 C2 N4  SING Y N 7  
DF8 C1 C4  SING Y N 8  
DF8 C  N6  SING Y N 9  
DF8 C7 O1  SING N N 10 
DF8 C7 C6  SING N N 11 
DF8 O  C6  SING N N 12 
DF8 O  C5  SING N N 13 
DF8 N4 C3  DOUB Y N 14 
DF8 C4 N6  SING Y N 15 
DF8 C4 N5  DOUB Y N 16 
DF8 N6 C5  SING N N 17 
DF8 C6 C8  SING N N 18 
DF8 C3 N5  SING Y N 19 
DF8 C5 C9  SING N N 20 
DF8 C8 C9  SING N N 21 
DF8 C8 O2  SING N N 22 
DF8 C9 O3  SING N N 23 
DF8 O3 H1  SING N N 24 
DF8 C5 H2  SING N N 25 
DF8 C6 H3  SING N N 26 
DF8 N1 H4  SING N N 27 
DF8 C7 H5  SING N N 28 
DF8 C7 H6  SING N N 29 
DF8 C8 H7  SING N N 30 
DF8 C9 H8  SING N N 31 
DF8 N3 H9  SING N N 32 
DF8 N3 H10 SING N N 33 
DF8 N  H11 SING N N 34 
DF8 N  H12 SING N N 35 
DF8 C3 H13 SING N N 36 
DF8 O1 H14 SING N N 37 
DF8 O2 H15 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DF8 InChI            InChI                1.03  "InChI=1S/C10H15N7O4/c11-7-4-8(14-2-13-7)17(10(15-4)16-12)9-6(20)5(19)3(1-18)21-9/h2-3,5-6,9,18-20H,1,12H2,(H,15,16)(H2,11,13,14)/t3-,5-,6-,9-/m1/s1" 
DF8 InChIKey         InChI                1.03  XMRQUQWRGIIBTK-UUOKFMHZSA-N                                                                                                                           
DF8 SMILES_CANONICAL CACTVS               3.385 "NNc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O"                                                                                                 
DF8 SMILES           CACTVS               3.385 "NNc1nc2c(N)ncnc2n1[CH]3O[CH](CO)[CH](O)[CH]3O"                                                                                                       
DF8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(c(n2)NN)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N"                                                                                         
DF8 SMILES           "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(c(n2)NN)C3C(C(C(O3)CO)O)O)N"                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           DF8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{S},5~{R})-2-(6-azanyl-8-diazanyl-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DF8 "Create component" 2018-01-17 RCSB 
DF8 "Initial release"  2019-01-30 RCSB 
DF8 "Modify synonyms"  2020-05-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 DF8 "NEOMYCIN A" ? ? 
2 DF8 NEAMINE      ? ? 
# 
