data_DM8
#

_chem_comp.id                                   DM8
_chem_comp.name                                 "2'-BROMO-4'-EPIDAUNORUBICIN"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C27 H28 Br N O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "WP401; DAUNOMYCIN DERIVATIVE; DAUNORUBICIN DERIVATIVE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       606.416
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DM8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       288D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DM8  C1      C1    C   0  1  Y  N  N  15.274  18.233   5.160   0.065   0.259  -6.672  C1      DM8   1  
DM8  C2      C2    C   0  1  Y  N  N  16.433  18.990   5.192   1.231  -0.077  -7.342  C2      DM8   2  
DM8  C3      C3    C   0  1  Y  N  N  17.770  18.382   5.139   2.396  -0.319  -6.644  C3      DM8   3  
DM8  C4      C4    C   0  1  Y  N  N  17.843  16.929   5.032   2.418  -0.229  -5.255  C4      DM8   4  
DM8  C5      C5    C   0  1  N  N  N  16.674  14.730   4.915   1.248   0.210  -3.095  C5      DM8   5  
DM8  C6      C6    C   0  1  Y  N  N  15.426  12.608   4.888  -0.100   0.070  -1.002  C6      DM8   6  
DM8  C7      C7    C   0  1  N  N  S  14.139  10.412   4.808  -1.314  -0.107   1.158  C7      DM8   7  
DM8  C8      C8    C   0  1  N  N  N  12.801   9.789   4.728  -2.609   0.393   1.793  C8      DM8   8  
DM8  C9      C9    C   0  1  N  N  S  11.663  10.538   5.336  -3.789  -0.207   1.020  C9      DM8   9  
DM8  C10     C10   C   0  1  N  N  N  11.604  12.036   4.877  -3.835   0.438  -0.362  C10     DM8  10  
DM8  C11     C11   C   0  1  Y  N  N  12.975  14.015   4.941  -2.441   0.559  -2.416  C11     DM8  11  
DM8  C12     C12   C   0  1  N  N  N  14.125  16.183   5.059  -1.171   0.712  -4.556  C12     DM8  12  
DM8  C13     C13   C   0  1  N  N  N  10.342   9.899   4.963  -3.600  -1.696   0.880  C13     DM8  13  
DM8  C14     C14   C   0  1  N  N  N  10.005   8.931   5.801  -4.053  -2.620   1.980  C14     DM8  14  
DM8  C15     C15   C   0  1  Y  N  N  15.409  16.834   5.075   0.064   0.354  -5.286  C15     DM8  15  
DM8  C16     C16   C   0  1  Y  N  N  16.626  16.234   5.000   1.249   0.103  -4.567  C16     DM8  16  
DM8  C17     C17   C   0  1  Y  N  N  15.398  14.004   4.947  -0.039   0.263  -2.379  C17     DM8  17  
DM8  C18     C18   C   0  1  Y  N  N  14.122  14.753   4.963  -1.228   0.509  -3.097  C18     DM8  18  
DM8  C19     C19   C   0  1  Y  N  N  12.913  12.616   4.899  -2.485   0.363  -1.029  C19     DM8  19  
DM8  C20     C20   C   0  1  Y  N  N  14.147  11.988   4.851  -1.329   0.119  -0.331  C20     DM8  20  
DM8  C21     C21   C   0  1  N  N  N  20.319  16.808   5.011   4.565  -0.784  -5.546  C21     DM8  21  
DM8  O4      O4    O   0  1  N  N  N  19.021  16.304   4.995   3.566  -0.468  -4.574  O4      DM8  22  
DM8  O5      O5    O   0  1  N  N  N  17.711  14.049   4.856   2.296   0.249  -2.479  O5      DM8  23  
DM8  O6      O6    O   0  1  N  N  N  16.522  11.918   4.845   1.038  -0.167  -0.305  O6      DM8  24  
DM8  O7      O7    O   0  1  N  N  N  14.812  10.154   6.083  -0.207   0.594   1.729  O7      DM8  25  
DM8  O9      O9    O   0  1  N  N  N  11.685  10.527   6.814  -5.007   0.059   1.717  O9      DM8  26  
DM8  O11     O11   O   0  1  N  N  N  11.778  14.756   5.000  -3.588   0.799  -3.098  O11     DM8  27  
DM8  O12     O12   O   0  1  N  N  N  13.090  16.892   5.080  -2.128   1.167  -5.153  O12     DM8  28  
DM8  O13     O13   O   0  1  N  N  N   9.358  10.261   3.922  -3.085  -2.148  -0.114  O13     DM8  29  
DM8  "C1'"   C1*   C   0  1  N  N  R  15.734   9.125   6.217   0.516  -0.349   2.520  "C1'"   DM8  30  
DM8  "C2'"   C2*   C   0  1  N  N  R  16.374   9.178   7.631   1.874   0.243   2.903  "C2'"   DM8  31  
DM8  "C3'"   C3*   C   0  1  N  N  R  15.317   8.898   8.650   1.651   1.543   3.681  "C3'"   DM8  32  
DM8  "C4'"   C4*   C   0  1  N  N  R  14.669   7.490   8.437   0.711   1.255   4.857  "C4'"   DM8  33  
DM8  "C5'"   C5*   C   0  1  N  N  S  13.895   7.563   7.065  -0.559   0.586   4.327  "C5'"   DM8  34  
DM8  "C6'"   C6*   C   0  1  N  N  N  13.306   6.228   6.622  -1.518   0.325   5.491  "C6'"   DM8  35  
DM8  "O5'"   O5*   O   0  1  N  N  N  14.958   7.857   6.030  -0.228  -0.650   3.699  "O5'"   DM8  36  
DM8  "O4'"   O4*   O   0  1  N  N  N  13.738   7.215   9.515   0.369   2.479   5.510  "O4'"   DM8  37  
DM8  "N3'"   N3*   N   0  1  N  N  N  15.872   8.945  10.107   2.935   2.045   4.189  "N3'"   DM8  38  
DM8  BR      BR    BR  0  0  N  N  N  17.849   8.110   7.610   2.859  -1.034   4.027  BR      DM8  39  
DM8  H1      H1    H   0  1  N  N  N  14.286  18.722   5.200  -0.841   0.448  -7.227  H1      DM8  40  
DM8  H2      H2    H   0  1  N  N  N  16.290  20.081   5.260   1.227  -0.150  -8.419  H2      DM8  41  
DM8  H3      H3    H   0  1  N  N  N  18.686  18.994   5.178   3.298  -0.580  -7.179  H3      DM8  42  
DM8  H7      H7    H   0  1  N  N  N  14.614   9.978   3.897  -1.204  -1.173   1.358  H7      DM8  43  
DM8  H81     1H8   H   0  1  N  N  N  12.564   9.554   3.663  -2.649   1.480   1.737  H81     DM8  44  
DM8  H82     2H8   H   0  1  N  N  N  12.843   8.762   5.161  -2.653   0.076   2.835  H82     DM8  45  
DM8  H101    1H10  H   0  0  N  N  N  11.117  12.146   3.879  -4.128   1.483  -0.260  H101    DM8  46  
DM8  H102    2H10  H   0  0  N  N  N  10.877  12.627   5.481  -4.569  -0.082  -0.977  H102    DM8  47  
DM8  H141    1H14  H   0  0  N  N  N   9.032   8.460   5.526  -3.835  -3.651   1.701  H141    DM8  48  
DM8  H142    2H14  H   0  0  N  N  N  10.814   8.168   5.884  -3.526  -2.374   2.902  H142    DM8  49  
DM8  H143    3H14  H   0  0  N  N  N   9.995   9.293   6.855  -5.126  -2.504   2.133  H143    DM8  50  
DM8  H211    1H21  H   0  0  N  N  N  21.303  16.285   4.980   5.510  -0.985  -5.043  H211    DM8  51  
DM8  H212    2H21  H   0  0  N  N  N  20.353  17.532   4.164   4.258  -1.666  -6.109  H212    DM8  52  
DM8  H213    3H21  H   0  0  N  N  N  20.364  17.448   5.922   4.687   0.056  -6.228  H213    DM8  53  
DM8  H6      H6    H   0  1  N  N  N  16.541  10.969   4.804   1.139  -1.127  -0.253  H6      DM8  54  
DM8  H9      H9    H   0  1  N  N  N  10.960  11.003   7.201  -5.722  -0.319   1.187  H9      DM8  55  
DM8  H11     H11   H   0  1  N  N  N  10.979  14.242   4.984  -3.936  -0.061  -3.371  H11     DM8  56  
DM8  "H1'"   H1*   H   0  1  N  N  N  16.562   9.201   5.475   0.669  -1.263   1.945  "H1'"   DM8  57  
DM8  "H2'"   H2*   H   0  1  N  N  N  16.758  10.181   7.929   2.447   0.452   2.000  "H2'"   DM8  58  
DM8  "H3'"   H3*   H   0  1  N  N  N  14.554   9.700   8.513   1.200   2.289   3.027  "H3'"   DM8  59  
DM8  "H4'"   H4*   H   0  1  N  N  N  15.436   6.681   8.427   1.205   0.589   5.565  "H4'"   DM8  60  
DM8  "H5'"   H5*   H   0  1  N  N  N  13.070   8.305   7.172  -1.039   1.243   3.603  "H5'"   DM8  61  
DM8  "H6'1"  1H6*  H   0  0  N  N  N  12.758   6.279   5.651  -2.425  -0.146   5.115  "H6'1"  DM8  62  
DM8  "H6'2"  2H6*  H   0  0  N  N  N  14.095   5.441   6.586  -1.039  -0.334   6.215  "H6'2"  DM8  63  
DM8  "H6'3"  3H6*  H   0  0  N  N  N  12.653   5.801   7.419  -1.771   1.269   5.972  "H6'3"  DM8  64  
DM8  "HO4'"  *HO4  H   0  0  N  N  N  13.344   6.360   9.385  -0.226   2.252   6.237  "HO4'"  DM8  65  
DM8  "HN'1"  1HN*  H   0  0  N  N  N  15.150   8.753  10.802   3.517   2.219   3.383  "HN'1"  DM8  66  
DM8  "HN'2"  2HN*  H   0  0  N  N  N  16.338   9.832  10.294   2.749   2.942   4.612  "HN'2"  DM8  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DM8  C1     C2      DOUB  Y  N   1  
DM8  C1     C15     SING  Y  N   2  
DM8  C1     H1      SING  N  N   3  
DM8  C2     C3      SING  Y  N   4  
DM8  C2     H2      SING  N  N   5  
DM8  C3     C4      DOUB  Y  N   6  
DM8  C3     H3      SING  N  N   7  
DM8  C4     C16     SING  Y  N   8  
DM8  C4     O4      SING  N  N   9  
DM8  C5     C16     SING  N  N  10  
DM8  C5     C17     SING  N  N  11  
DM8  C5     O5      DOUB  N  N  12  
DM8  C6     C17     DOUB  Y  N  13  
DM8  C6     C20     SING  Y  N  14  
DM8  C6     O6      SING  N  N  15  
DM8  C7     C8      SING  N  N  16  
DM8  C7     C20     SING  N  N  17  
DM8  C7     O7      SING  N  N  18  
DM8  C7     H7      SING  N  N  19  
DM8  C8     C9      SING  N  N  20  
DM8  C8     H81     SING  N  N  21  
DM8  C8     H82     SING  N  N  22  
DM8  C9     C10     SING  N  N  23  
DM8  C9     C13     SING  N  N  24  
DM8  C9     O9      SING  N  N  25  
DM8  C10    C19     SING  N  N  26  
DM8  C10    H101    SING  N  N  27  
DM8  C10    H102    SING  N  N  28  
DM8  C11    C18     DOUB  Y  N  29  
DM8  C11    C19     SING  Y  N  30  
DM8  C11    O11     SING  N  N  31  
DM8  C12    C15     SING  N  N  32  
DM8  C12    C18     SING  N  N  33  
DM8  C12    O12     DOUB  N  N  34  
DM8  C13    C14     SING  N  N  35  
DM8  C13    O13     DOUB  N  N  36  
DM8  C14    H141    SING  N  N  37  
DM8  C14    H142    SING  N  N  38  
DM8  C14    H143    SING  N  N  39  
DM8  C15    C16     DOUB  Y  N  40  
DM8  C17    C18     SING  Y  N  41  
DM8  C19    C20     DOUB  Y  N  42  
DM8  C21    O4      SING  N  N  43  
DM8  C21    H211    SING  N  N  44  
DM8  C21    H212    SING  N  N  45  
DM8  C21    H213    SING  N  N  46  
DM8  O6     H6      SING  N  N  47  
DM8  O7     "C1'"   SING  N  N  48  
DM8  O9     H9      SING  N  N  49  
DM8  O11    H11     SING  N  N  50  
DM8  "C1'"  "C2'"   SING  N  N  51  
DM8  "C1'"  "O5'"   SING  N  N  52  
DM8  "C1'"  "H1'"   SING  N  N  53  
DM8  "C2'"  "C3'"   SING  N  N  54  
DM8  "C2'"  BR      SING  N  N  55  
DM8  "C2'"  "H2'"   SING  N  N  56  
DM8  "C3'"  "C4'"   SING  N  N  57  
DM8  "C3'"  "N3'"   SING  N  N  58  
DM8  "C3'"  "H3'"   SING  N  N  59  
DM8  "C4'"  "C5'"   SING  N  N  60  
DM8  "C4'"  "O4'"   SING  N  N  61  
DM8  "C4'"  "H4'"   SING  N  N  62  
DM8  "C5'"  "C6'"   SING  N  N  63  
DM8  "C5'"  "O5'"   SING  N  N  64  
DM8  "C5'"  "H5'"   SING  N  N  65  
DM8  "C6'"  "H6'1"  SING  N  N  66  
DM8  "C6'"  "H6'2"  SING  N  N  67  
DM8  "C6'"  "H6'3"  SING  N  N  68  
DM8  "O4'"  "HO4'"  SING  N  N  69  
DM8  "N3'"  "HN'1"  SING  N  N  70  
DM8  "N3'"  "HN'2"  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DM8  SMILES            ACDLabs               10.04  "O=C2c1c(O)c5c(c(O)c1C(=O)c3cccc(OC)c23)CC(O)(C(=O)C)CC5OC4OC(C(O)C(N)C4Br)C"  
DM8  SMILES_CANONICAL  CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@@H]5O[C@@H](C)[C@H](O)[C@@H](N)[C@H]5Br)c4c(O)c3C(=O)c12)C(C)=O"  
DM8  SMILES            CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5O[CH](C)[CH](O)[CH](N)[CH]5Br)c4c(O)c3C(=O)c12)C(C)=O"  
DM8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)C)O)Br)N)O"  
DM8  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(C(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)C)O)Br)N)O"  
DM8  InChI             InChI                 1.03   "InChI=1S/C27H28BrNO10/c1-9-21(31)20(29)19(28)26(38-9)39-14-8-27(36,10(2)30)7-12-16(14)25(35)18-17(23(12)33)22(32)11-5-4-6-13(37-3)15(11)24(18)34/h4-6,9,14,19-21,26,31,33,35-36H,7-8,29H2,1-3H3/t9-,14-,19+,20-,21-,26-,27-/m0/s1"  
DM8  InChIKey          InChI                 1.03   RNTSDANIDLGPLQ-VQBVCDDFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DM8  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,3S)-3-acetyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2-bromo-2,3,6-trideoxy-alpha-L-mannopyranoside"  
DM8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(7S,9S)-7-[(2R,3R,4R,5R,6S)-4-amino-3-bromo-5-hydroxy-6-methyl-oxan-2-yl]oxy-9-ethanoyl-6,9,11-trihydroxy-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DM8  "Create component"   1999-07-08  RCSB  
DM8  "Modify descriptor"  2011-06-04  RCSB  
DM8  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  DM8  WP401                      ?  ?  
2  DM8  "DAUNOMYCIN DERIVATIVE"    ?  ?  
3  DM8  "DAUNORUBICIN DERIVATIVE"  ?  ?  
##
