data_PR8
#

_chem_comp.id                                   PR8
_chem_comp.name                                 "5'-O-[(R)-hydroxy{[(2S)-pyrrolidin-2-ylcarbonyl]oxy}phosphoryl]adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H21 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        prolyl-adenylate
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-07-16
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       444.336
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PR8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3IAL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PR8  C       C       C  0  1  N  N  N  52.697  84.803  15.521   5.226  -0.212  -0.058  C       PR8   1  
PR8  N       N       N  0  1  N  N  N  53.731  85.930  17.462   7.541  -0.786  -0.653  N       PR8   2  
PR8  O       O       O  0  1  N  N  N  53.501  83.895  15.745   5.683   0.358   0.904  O       PR8   3  
PR8  P       P       P  0  1  N  N  N  51.771  83.467  13.584   3.053   0.898   0.575  P       PR8   4  
PR8  N1      N1      N  0  1  Y  N  N  58.016  78.020   8.451  -7.136  -1.963  -0.797  N1      PR8   5  
PR8  C2      C2      C  0  1  Y  N  N  58.029  79.207   7.847  -6.694  -1.010  -1.598  C2      PR8   6  
PR8  N3      N3      N  0  1  Y  N  N  57.234  80.196   8.239  -5.542  -0.403  -1.406  N3      PR8   7  
PR8  C4      C4      C  0  1  Y  N  N  56.388  80.033   9.262  -4.765  -0.733  -0.379  C4      PR8   8  
PR8  C5      C5      C  0  1  Y  N  N  56.356  78.803   9.913  -5.190  -1.742   0.502  C5      PR8   9  
PR8  C6      C6      C  0  1  Y  N  N  57.198  77.782   9.489  -6.428  -2.360   0.255  C6      PR8  10  
PR8  N6      N6      N  0  1  N  N  N  57.194  76.595  10.104  -6.899  -3.359   1.089  N6      PR8  11  
PR8  N7      N7      N  0  1  Y  N  N  55.459  78.890  10.885  -4.228  -1.880   1.445  N7      PR8  12  
PR8  C8      C8      C  0  1  Y  N  N  54.937  80.117  10.850  -3.262  -1.041   1.204  C8      PR8  13  
PR8  N9      N9      N  0  1  Y  N  N  55.495  80.822   9.859  -3.547  -0.311   0.089  N9      PR8  14  
PR8  CA      CA      C  0  1  N  N  S  52.676  86.058  16.423   6.109  -1.099  -0.898  CA      PR8  15  
PR8  CB      CB      C  0  1  N  N  N  53.028  87.249  15.548   5.954  -2.574  -0.469  CB      PR8  16  
PR8  CD      CD      C  0  1  N  N  N  54.717  86.967  17.153   8.260  -2.014  -1.077  CD      PR8  17  
PR8  CG      CG      C  0  1  N  N  N  54.527  87.293  15.672   7.370  -3.176  -0.587  CG      PR8  18  
PR8  "C1'"   "C1'"   C  0  1  N  N  R  55.167  82.239   9.528  -2.706   0.734  -0.501  "C1'"   PR8  19  
PR8  O10     O10     O  0  1  N  N  N  51.775  84.812  14.507   3.931  -0.061  -0.376  O10     PR8  20  
PR8  O1P     O1P     O  0  1  N  N  N  51.335  82.264  14.326   2.956   0.252   2.046  O1P     PR8  21  
PR8  "C2'"   "C2'"   C  0  1  N  N  R  53.774  82.510   8.918  -3.089   2.118   0.068  "C2'"   PR8  22  
PR8  "O2'"   "O2'"   O  0  1  N  N  N  53.865  83.604   7.995  -3.953   2.809  -0.835  "O2'"   PR8  23  
PR8  O2P     O2P     O  0  1  N  N  N  50.766  83.839  12.371   3.694   2.228   0.661  O2P     PR8  24  
PR8  "C3'"   "C3'"   C  0  1  N  N  S  52.992  83.044  10.081  -1.738   2.857   0.198  "C3'"   PR8  25  
PR8  "O3'"   "O3'"   O  0  1  N  N  N  51.924  83.851   9.572  -1.727   4.027  -0.622  "O3'"   PR8  26  
PR8  "C4'"   "C4'"   C  0  1  N  N  R  54.077  83.930  10.682  -0.699   1.832  -0.309  "C4'"   PR8  27  
PR8  "O4'"   "O4'"   O  0  1  N  N  N  55.200  83.022  10.767  -1.327   0.545  -0.117  "O4'"   PR8  28  
PR8  "C5'"   "C5'"   C  0  1  N  N  N  53.666  84.437  12.060   0.587   1.925   0.515  "C5'"   PR8  29  
PR8  "O5'"   "O5'"   O  0  1  N  N  N  53.238  83.362  12.911   1.573   1.054  -0.041  "O5'"   PR8  30  
PR8  HN      HN      H  0  1  N  N  N  53.348  86.066  18.375   7.835   0.012  -1.197  HN      PR8  31  
PR8  H2      H2      H  0  1  N  N  N  58.702  79.369   7.018  -7.301  -0.718  -2.442  H2      PR8  32  
PR8  HN6     HN6     H  0  1  N  N  N  57.861  75.991   9.668  -7.755  -3.778   0.908  HN6     PR8  33  
PR8  HN6A    HN6A    H  0  0  N  N  N  57.435  76.718  11.067  -6.373  -3.641   1.854  HN6A    PR8  34  
PR8  H8      H8      H  0  1  N  N  N  54.177  80.487  11.522  -2.368  -0.939   1.800  H8      PR8  35  
PR8  HA      HA      H  0  1  N  N  N  51.691  86.176  16.898   5.870  -0.981  -1.955  HA      PR8  36  
PR8  HB      HB      H  0  1  N  N  N  52.703  87.107  14.507   5.602  -2.634   0.560  HB      PR8  37  
PR8  HBA     HBA     H  0  1  N  N  N  52.556  88.177  15.904   5.266  -3.092  -1.137  HBA     PR8  38  
PR8  HD      HD      H  0  1  N  N  N  54.550  87.860  17.773   8.358  -2.042  -2.163  HD      PR8  39  
PR8  HDA     HDA     H  0  1  N  N  N  55.737  86.603  17.344   9.243  -2.061  -0.607  HDA     PR8  40  
PR8  HG      HG      H  0  1  N  N  N  55.021  86.560  15.017   7.712  -3.532   0.384  HG      PR8  41  
PR8  HGA     HGA     H  0  1  N  N  N  54.938  88.278  15.406   7.376  -3.990  -1.313  HGA     PR8  42  
PR8  "H1'"   "H1'"   H  0  1  N  N  N  55.913  82.511   8.767  -2.802   0.729  -1.587  "H1'"   PR8  43  
PR8  HO1P    HO1P    H  0  0  N  N  N  50.532  81.930  13.944   2.545  -0.623   2.065  HO1P    PR8  44  
PR8  "H2'"   "H2'"   H  0  1  N  N  N  53.356  81.622   8.422  -3.561   2.012   1.045  "H2'"   PR8  45  
PR8  "HO2'"  "HO2'"  H  0  0  N  N  N  53.009  83.773   7.618  -4.225   3.685  -0.527  "HO2'"  PR8  46  
PR8  "H3'"   "H3'"   H  0  1  N  N  N  52.539  82.311  10.765  -1.543   3.116   1.238  "H3'"   PR8  47  
PR8  "HO3'"  "HO3'"  H  0  0  N  N  N  51.416  84.199  10.296  -2.401   4.679  -0.385  "HO3'"  PR8  48  
PR8  "H4'"   "H4'"   H  0  1  N  N  N  54.289  84.836  10.095  -0.487   1.997  -1.365  "H4'"   PR8  49  
PR8  "H5'"   "H5'"   H  0  1  N  N  N  54.529  84.936  12.526   0.956   2.951   0.497  "H5'"   PR8  50  
PR8  "H5'A"  "H5'A"  H  0  0  N  N  N  52.835  85.148  11.943   0.381   1.631   1.544  "H5'A"  PR8  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PR8  O10    C       SING  N  N   1  
PR8  C      O       DOUB  N  N   2  
PR8  C      CA      SING  N  N   3  
PR8  CA     N       SING  N  N   4  
PR8  CD     N       SING  N  N   5  
PR8  N      HN      SING  N  N   6  
PR8  O2P    P       DOUB  N  N   7  
PR8  "O5'"  P       SING  N  N   8  
PR8  P      O1P     SING  N  N   9  
PR8  P      O10     SING  N  N  10  
PR8  C2     N1      DOUB  Y  N  11  
PR8  N1     C6      SING  Y  N  12  
PR8  C2     N3      SING  Y  N  13  
PR8  C2     H2      SING  N  N  14  
PR8  N3     C4      DOUB  Y  N  15  
PR8  C4     N9      SING  Y  N  16  
PR8  C4     C5      SING  Y  N  17  
PR8  C6     C5      DOUB  Y  N  18  
PR8  C5     N7      SING  Y  N  19  
PR8  C6     N6      SING  N  N  20  
PR8  N6     HN6     SING  N  N  21  
PR8  N6     HN6A    SING  N  N  22  
PR8  C8     N7      DOUB  Y  N  23  
PR8  N9     C8      SING  Y  N  24  
PR8  C8     H8      SING  N  N  25  
PR8  "C1'"  N9      SING  N  N  26  
PR8  CB     CA      SING  N  N  27  
PR8  CA     HA      SING  N  N  28  
PR8  CB     CG      SING  N  N  29  
PR8  CB     HB      SING  N  N  30  
PR8  CB     HBA     SING  N  N  31  
PR8  CG     CD      SING  N  N  32  
PR8  CD     HD      SING  N  N  33  
PR8  CD     HDA     SING  N  N  34  
PR8  CG     HG      SING  N  N  35  
PR8  CG     HGA     SING  N  N  36  
PR8  "C2'"  "C1'"   SING  N  N  37  
PR8  "C1'"  "O4'"   SING  N  N  38  
PR8  "C1'"  "H1'"   SING  N  N  39  
PR8  O1P    HO1P    SING  N  N  40  
PR8  "O2'"  "C2'"   SING  N  N  41  
PR8  "C2'"  "C3'"   SING  N  N  42  
PR8  "C2'"  "H2'"   SING  N  N  43  
PR8  "O2'"  "HO2'"  SING  N  N  44  
PR8  "O3'"  "C3'"   SING  N  N  45  
PR8  "C3'"  "C4'"   SING  N  N  46  
PR8  "C3'"  "H3'"   SING  N  N  47  
PR8  "O3'"  "HO3'"  SING  N  N  48  
PR8  "C4'"  "O4'"   SING  N  N  49  
PR8  "C4'"  "C5'"   SING  N  N  50  
PR8  "C4'"  "H4'"   SING  N  N  51  
PR8  "C5'"  "O5'"   SING  N  N  52  
PR8  "C5'"  "H5'"   SING  N  N  53  
PR8  "C5'"  "H5'A"  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PR8  SMILES            ACDLabs               11.02  "O=P(OC(=O)C1NCCC1)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O"  
PR8  SMILES_CANONICAL  CACTVS                3.352  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)[C@@H]4CCCN4)[C@@H](O)[C@H]3O"  
PR8  SMILES            CACTVS                3.352  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)[CH]4CCCN4)[CH](O)[CH]3O"  
PR8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OC(=O)[C@@H]4CCCN4)O)O)N"  
PR8  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)C4CCCN4)O)O)N"  
PR8  InChI             InChI                 1.03   "InChI=1S/C15H21N6O8P/c16-12-9-13(19-5-18-12)21(6-20-9)14-11(23)10(22)8(28-14)4-27-30(25,26)29-15(24)7-2-1-3-17-7/h5-8,10-11,14,17,22-23H,1-4H2,(H,25,26)(H2,16,18,19)/t7-,8+,10+,11+,14+/m0/s1"  
PR8  InChIKey          InChI                 1.03   KQFKHTAASHMYDJ-TWBCTODHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PR8  "SYSTEMATIC NAME"  ACDLabs               11.02  "5'-O-[(R)-hydroxy{[(2S)-pyrrolidin-2-ylcarbonyl]oxy}phosphoryl]adenosine"  
PR8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-pyrrolidine-2-carboxylate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PR8  "Create component"      2009-07-16  RCSB  
PR8  "Modify aromatic_flag"  2011-06-04  RCSB  
PR8  "Modify descriptor"     2011-06-04  RCSB  
PR8  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PR8
_pdbx_chem_comp_synonyms.name        prolyl-adenylate
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
