data_TP8
#

_chem_comp.id                                   TP8
_chem_comp.name                                 
;5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-[(1Z)-1-HYDROXY-3-(PHOSPHONOOXY)PROP-1-EN-1-YL]-3-{[(4Z)-4-IMINO-2-
METHYL-4,5-DIHYDROPYRIMIDIN-5-YL]METHYL}-4-METHYL-1,3-THIAZOL-3-IUM
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H21 N4 O12 P3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PUTATIVE ENOL(ATE)-THDP REACTION INTERMEDIATE"
_chem_comp.pdbx_formal_charge                   -2
_chem_comp.pdbx_initial_date                    2006-10-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       574.333
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TP8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TP8  C8      C8      C   0  1  N  N  N  19.825  108.817  41.443   4.321  -1.570  -1.049  C8      TP8   1  
TP8  C5      C5      C   0  1  Y  N  N  21.967  111.537  43.388   6.902  -2.284  -3.801  C5      TP8   2  
TP8  C4      C4      C   0  1  Y  N  N  22.535  110.284  43.613   7.115  -3.134  -2.742  C4      TP8   3  
TP8  N3      N3      N   1  1  Y  N  N  21.886  109.260  42.980   6.218  -2.923  -1.724  N3      TP8   4  
TP8  C2      C2      C   0  1  Y  N  N  20.805  109.620  42.243   5.337  -1.973  -1.932  C2      TP8   5  
TP8  C6      C6      C   0  1  N  N  N  22.379  112.889  43.911   7.623  -2.169  -5.085  C6      TP8   6  
TP8  O3C     O3C     O  -1  1  N  N  N  14.797  108.115  40.668   0.090  -4.310   2.143  O3C     TP8   7  
TP8  PC      PC      P   0  1  N  N  N  15.702  108.070  39.461   0.267  -2.935   1.535  PC      TP8   8  
TP8  O1C     O1C     O   0  1  N  N  N  15.809  106.713  38.810  -0.902  -2.232   0.879  O1C     TP8   9  
TP8  O2C     O2C     O   0  1  N  N  N  15.507  109.217  38.488   0.890  -1.950   2.680  O2C     TP8  10  
TP8  O10     O10     O   0  1  N  N  N  17.188  108.331  40.032   1.532  -2.990   0.505  O10     TP8  11  
TP8  C10     C10     C   0  1  N  N  N  17.619  107.965  41.370   1.906  -1.813  -0.201  C10     TP8  12  
TP8  C9      C9      C   0  1  N  N  N  18.589  108.663  41.961   3.082  -2.132  -1.069  C9      TP8  13  
TP8  O8      O8      O   0  1  N  N  N  20.139  108.287  40.388   4.684  -0.569  -0.157  O8      TP8  14  
TP8  "C7,"   "C7,"   C   0  1  N  N  N  22.342  107.877  43.090   6.243  -3.703  -0.495  "C7,"   TP8  15  
TP8  "C5,"   "C5,"   C   0  1  N  N  R  23.567  107.606  42.230   7.137  -3.049   0.551  "C5,"   TP8  16  
TP8  "C4,"   "C4,"   C   0  1  N  N  N  23.656  107.928  40.874   7.220  -3.915   1.778  "C4,"   TP8  17  
TP8  "N4,"   "N4,"   N   0  1  N  N  N  22.648  108.528  40.202   7.977  -4.961   1.828  "N4,"   TP8  18  
TP8  "N3,"   "N3,"   N   0  1  N  N  N  24.783  107.635  40.184   6.446  -3.597   2.861  "N3,"   TP8  19  
TP8  "C2,"   "C2,"   C   0  1  N  N  N  25.825  107.033  40.796   5.900  -2.422   2.921  "C2,"   TP8  20  
TP8  CM2     CM2     C   0  1  N  N  N  27.071  106.705  40.018   5.054  -2.069   4.112  CM2     TP8  21  
TP8  "N1,"   "N1,"   N   0  1  N  N  N  25.754  106.720  42.108   6.017  -1.414   1.994  "N1,"   TP8  22  
TP8  "C6,"   "C6,"   C   0  1  N  N  N  24.660  106.993  42.828   6.601  -1.689   0.875  "C6,"   TP8  23  
TP8  CM4     CM4     C   0  1  N  N  N  23.763  110.116  44.482   8.132  -4.184  -2.580  CM4     TP8  24  
TP8  S1      S1      S   0  1  Y  N  N  20.537  111.390  42.328   5.570  -1.249  -3.464  S1      TP8  25  
TP8  C7      C7      C   0  1  N  N  N  22.065  114.039  42.982   8.800  -1.184  -5.045  C7      TP8  26  
TP8  O7      O7      O   0  1  N  N  N  22.355  115.200  43.747   9.756  -1.626  -4.089  O7      TP8  27  
TP8  PA      PA      P   0  1  N  N  N  22.850  116.549  43.036  11.111  -0.743  -3.856  PA      TP8  28  
TP8  O1A     O1A     O  -1  1  N  N  N  23.480  117.412  44.104  11.945  -1.431  -2.797  O1A     TP8  29  
TP8  O2A     O2A     O   0  1  N  N  N  23.656  116.182  41.818  11.714  -0.380  -5.196  O2A     TP8  30  
TP8  O3A     O3A     O   0  1  N  N  N  21.451  117.173  42.531  10.453   0.602  -3.203  O3A     TP8  31  
TP8  PB      PB      P   0  1  N  N  N  20.100  117.281  43.415   9.569   0.805  -1.846  PB      TP8  32  
TP8  O2B     O2B     O  -1  1  N  N  N  19.495  115.898  43.495   8.235   0.113  -2.020  O2B     TP8  33  
TP8  O3B     O3B     O   0  1  N  N  N  20.589  117.815  44.744  10.438   0.523  -0.640  O3B     TP8  34  
TP8  O1B     O1B     O   0  1  N  N  N  19.272  118.237  42.596   9.332   2.417  -1.946  O1B     TP8  35  
TP8  HO8     HO8     H   0  1  N  N  N  20.221  108.950  39.712   4.390  -0.807   0.725  HO8     TP8  36  
TP8  H9      H9      H   0  1  N  N  N  18.373  109.132  42.909   2.891  -2.918  -1.801  H9      TP8  37  
TP8  H101    1H10    H   0  0  N  N  N  16.734  108.061  42.016   2.098  -1.026   0.530  H101    TP8  38  
TP8  H102    2H10    H   0  0  N  N  N  18.054  106.963  41.243   1.063  -1.505  -0.828  H102    TP8  39  
TP8  H2C     H2C     H   0  1  N  N  N  15.466  110.036  38.967   0.890  -0.983   2.517  H2C     TP8  40  
TP8  H61     1H6     H   0  1  N  N  N  21.844  113.063  44.856   8.003  -3.156  -5.411  H61     TP8  41  
TP8  H62     2H6     H   0  1  N  N  N  23.473  112.864  44.027   6.933  -1.841  -5.884  H62     TP8  42  
TP8  H71     1H7     H   0  1  N  N  N  22.683  113.997  42.073   9.297  -1.138  -6.019  H71     TP8  43  
TP8  H72     2H7     H   0  1  N  N  N  21.022  114.020  42.632   8.467  -0.177  -4.772  H72     TP8  44  
TP8  H1B     H1B     H   0  1  N  N  N  19.098  119.021  43.104   8.650   2.751  -2.568  H1B     TP8  45  
TP8  HM41    1HM4    H   0  0  N  N  N  24.660  110.075  43.846   9.001  -4.007  -3.238  HM41    TP8  46  
TP8  HM42    2HM4    H   0  0  N  N  N  23.842  110.968  45.173   8.510  -4.245  -1.543  HM42    TP8  47  
TP8  HM43    3HM4    H   0  0  N  N  N  23.679  109.183  45.058   7.738  -5.189  -2.816  HM43    TP8  48  
TP8  "H7,1"  "1H7,"  H   0  0  N  N  N  22.600  107.675  44.140   5.225  -3.797  -0.109  "H7,1"  TP8  49  
TP8  "H7,2"  "2H7,"  H   0  0  N  N  N  21.530  107.223  42.739   6.604  -4.710  -0.718  "H7,2"  TP8  50  
TP8  "H5,"   "H5,"   H   0  1  N  N  N  22.752  108.192  41.781   8.145  -2.919   0.140  "H5,"   TP8  51  
TP8  "H6,"   "H6,"   H   0  1  N  N  N  24.627  106.736  43.876   6.697  -0.903   0.109  "H6,"   TP8  52  
TP8  "H4,"   "H4,"   H   0  1  N  N  N  21.881  108.686  40.824   8.465  -5.065   0.933  "H4,"   TP8  53  
TP8  HM21    1HM2    H   0  0  N  N  N  26.826  106.625  38.949   5.646  -2.174   5.017  HM21    TP8  54  
TP8  HM22    2HM2    H   0  0  N  N  N  27.815  107.502  40.165   4.196  -2.735   4.155  HM22    TP8  55  
TP8  HM23    3HM2    H   0  0  N  N  N  27.483  105.748  40.372   4.707  -1.043   4.016  HM23    TP8  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TP8  C8     O8      SING  N  N   1  
TP8  C8     C9      DOUB  N  Z   2  
TP8  C8     C2      SING  N  N   3  
TP8  C5     C4      DOUB  Y  N   4  
TP8  C5     S1      SING  Y  N   5  
TP8  C5     C6      SING  N  N   6  
TP8  C4     N3      SING  Y  N   7  
TP8  C4     CM4     SING  N  N   8  
TP8  N3     C2      DOUB  Y  N   9  
TP8  N3     "C7,"   SING  N  N  10  
TP8  C2     S1      SING  Y  N  11  
TP8  C6     H61     SING  N  N  12  
TP8  C6     H62     SING  N  N  13  
TP8  C6     C7      SING  N  N  14  
TP8  O3C    PC      SING  N  N  15  
TP8  PC     O10     SING  N  N  16  
TP8  PC     O1C     DOUB  N  N  17  
TP8  PC     O2C     SING  N  N  18  
TP8  O2C    H2C     SING  N  N  19  
TP8  O10    C10     SING  N  N  20  
TP8  C10    C9      SING  N  N  21  
TP8  C10    H101    SING  N  N  22  
TP8  C10    H102    SING  N  N  23  
TP8  C9     H9      SING  N  N  24  
TP8  O8     HO8     SING  N  N  25  
TP8  "C7,"  "H7,1"  SING  N  N  26  
TP8  "C7,"  "H7,2"  SING  N  N  27  
TP8  "C7,"  "C5,"   SING  N  N  28  
TP8  "C5,"  "H5,"   SING  N  N  29  
TP8  "C5,"  "C6,"   SING  N  N  30  
TP8  "C5,"  "C4,"   SING  N  N  31  
TP8  "C4,"  "N3,"   SING  N  N  32  
TP8  "C4,"  "N4,"   DOUB  N  N  33  
TP8  "N4,"  "H4,"   SING  N  N  34  
TP8  "N3,"  "C2,"   DOUB  N  N  35  
TP8  "C2,"  "N1,"   SING  N  N  36  
TP8  "C2,"  CM2     SING  N  N  37  
TP8  CM2    HM21    SING  N  N  38  
TP8  CM2    HM22    SING  N  N  39  
TP8  CM2    HM23    SING  N  N  40  
TP8  "N1,"  "C6,"   DOUB  N  N  41  
TP8  "C6,"  "H6,"   SING  N  N  42  
TP8  CM4    HM41    SING  N  N  43  
TP8  CM4    HM42    SING  N  N  44  
TP8  CM4    HM43    SING  N  N  45  
TP8  C7     H71     SING  N  N  46  
TP8  C7     H72     SING  N  N  47  
TP8  C7     O7      SING  N  N  48  
TP8  O7     PA      SING  N  N  49  
TP8  PA     O1A     SING  N  N  50  
TP8  PA     O2A     DOUB  N  N  51  
TP8  PA     O3A     SING  N  N  52  
TP8  O3A    PB      SING  N  N  53  
TP8  PB     O2B     SING  N  N  54  
TP8  PB     O3B     DOUB  N  N  55  
TP8  PB     O1B     SING  N  N  56  
TP8  O1B    H1B     SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TP8  SMILES_CANONICAL  CACTVS                3.341  "CC1=NC(=N)[C@@H](C[n+]2c(C)c(CCO[P]([O-])(=O)O[P](O)([O-])=O)sc2\C(O)=C\CO[P](O)([O-])=O)C=N1"  
TP8  SMILES            CACTVS                3.341  "CC1=NC(=N)[CH](C[n+]2c(C)c(CCO[P]([O-])(=O)O[P](O)([O-])=O)sc2C(O)=CCO[P](O)([O-])=O)C=N1"  
TP8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[H]/N=C/1\[C@H](C=NC(=N1)C)C[n+]2c(c(sc2/C(=C/CO[P@](=O)(O)[O-])/O)CCO[P@](=O)([O-])O[P@@](=O)(O)[O-])C"  
TP8  SMILES            "OpenEye OEToolkits"  1.5.0  "[H]N=C1C(C=NC(=N1)C)C[n+]2c(c(sc2C(=CCOP(=O)(O)[O-])O)CCOP(=O)([O-])OP(=O)(O)[O-])C"  
TP8  InChI             InChI                 1.03   "InChI=1S/C15H23N4O12P3S/c1-9-13(4-6-30-34(27,28)31-33(24,25)26)35-15(12(20)3-5-29-32(21,22)23)19(9)8-11-7-17-10(2)18-14(11)16/h3,7,11,16H,4-6,8H2,1-2H3,(H5-,20,21,22,23,24,25,26,27,28)/p-2/b12-3-,16-14+"  
TP8  InChIKey          InChI                 1.03   IYJJFPCOWJABBY-AOCMNYQTSA-L  
#
_pdbx_chem_comp_identifier.comp_id          TP8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "[(Z)-3-hydroxy-3-[5-[2-[(hydroxy-oxido-phosphoryl)oxy-oxido-phosphoryl]oxyethyl]-3-[[(5S)-4-imino-2-methyl-5H-pyrimidin-5-yl]methyl]-4-methyl-1,3-thiazol-3-ium-2-yl]prop-2-enyl] hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TP8  "Create component"   2006-10-13  EBI   
TP8  "Modify descriptor"  2011-06-04  RCSB  
TP8  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TP8
_pdbx_chem_comp_synonyms.name        "PUTATIVE ENOL(ATE)-THDP REACTION INTERMEDIATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
