data_WN8
# 
_chem_comp.id                                    WN8 
_chem_comp.name                                  "(6~{S},7~{S},12~{S})-12-methyl-6,7,16,18-tetrakis(oxidanyl)-2,13-dioxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-8,14-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H24 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-09 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        368.378 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WN8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QR4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WN8 C4  C1  C 0 1 N N N N N N -10.778 12.696 41.687 3.711  1.677  0.057  C4  WN8 1  
WN8 C5  C2  C 0 1 N N N N N N -10.865 14.208 41.794 3.371  0.238  0.362  C5  WN8 2  
WN8 C6  C3  C 0 1 N N S N N N -10.902 14.899 43.133 3.893  -0.861 -0.524 C6  WN8 3  
WN8 C7  C4  C 0 1 N N S N N N -12.261 14.752 43.809 3.225  -2.193 -0.183 C7  WN8 4  
WN8 C8  C5  C 0 1 N N N N N N -13.406 14.894 42.816 1.772  -2.176 -0.655 C8  WN8 5  
WN8 C9  C6  C 0 1 N N N N N N -14.087 16.254 42.868 0.821  -2.367 0.525  C9  WN8 6  
WN8 C10 C7  C 0 1 N N N N N N -15.547 16.074 42.472 -0.569 -2.747 0.005  C10 WN8 7  
WN8 C11 C8  C 0 1 Y N N N N N -17.008 14.117 42.544 -2.239 -1.116 -0.465 C11 WN8 8  
WN8 C12 C9  C 0 1 Y N N N N N -17.913 14.803 43.343 -3.392 -1.871 -0.349 C12 WN8 9  
WN8 C3  C10 C 0 1 N N N N N N -12.124 12.016 41.392 2.517  2.351  -0.620 C3  WN8 10 
WN8 C2  C11 C 0 1 N N N N N N -12.773 12.426 40.078 1.366  2.486  0.380  C2  WN8 11 
WN8 C1  C12 C 0 1 N N S N N N -14.214 11.927 39.979 0.163  3.125  -0.316 C1  WN8 12 
WN8 C   C13 C 0 1 N N N N N N -14.751 12.246 38.588 -0.011 4.562  0.185  C   WN8 13 
WN8 O   O1  O 0 1 N N N N N N -10.885 14.884 40.778 2.680  -0.014 1.320  O   WN8 14 
WN8 C13 C14 C 0 1 Y N N N N N -19.169 14.275 43.596 -4.573 -1.282 0.084  C13 WN8 15 
WN8 C14 C15 C 0 1 Y N N N N N -19.511 13.044 43.053 -4.607 0.071  0.393  C14 WN8 16 
WN8 C15 C16 C 0 1 Y N N N N N -18.601 12.353 42.262 -3.474 0.850  0.244  C15 WN8 17 
WN8 C16 C17 C 0 1 Y N N N N N -17.346 12.884 42.002 -2.282 0.267  -0.212 C16 WN8 18 
WN8 C17 C18 C 0 1 N N N N N N -16.378 12.111 41.148 -1.081 1.082  -0.428 C17 WN8 19 
WN8 O1  O2  O 0 1 N N N N N N -10.642 16.295 42.952 5.308  -0.983 -0.353 O1  WN8 20 
WN8 O2  O3  O 0 1 N N N N N N -12.396 15.753 44.825 3.296  -2.433 1.221  O2  WN8 21 
WN8 O3  O4  O 0 1 N N N N N N -15.778 14.674 42.322 -1.073 -1.704 -0.831 O3  WN8 22 
WN8 O4  O5  O 0 1 N N N N N N -20.054 14.960 44.373 -5.697 -2.032 0.206  O4  WN8 23 
WN8 O5  O6  O 0 1 N N N N N N -18.958 11.147 41.741 -3.530 2.173  0.538  O5  WN8 24 
WN8 O6  O7  O 0 1 N N N N N N -16.744 11.075 40.616 -0.120 0.595  -0.996 O6  WN8 25 
WN8 O7  O8  O 0 1 N N N N N N -15.000 12.573 40.987 -1.035 2.362  -0.020 O7  WN8 26 
WN8 H41 H1  H 0 1 N N N N N N -10.078 12.446 40.876 3.942  2.196  0.987  H41 WN8 27 
WN8 H9  H2  H 0 1 N N N N N N -10.392 12.303 42.639 4.576  1.715  -0.604 H9  WN8 28 
WN8 H1  H3  H 0 1 N N N N N N -10.135 14.456 43.784 3.681  -0.613 -1.568 H1  WN8 29 
WN8 H2  H4  H 0 1 N N N N N N -12.317 13.752 44.264 3.756  -2.998 -0.705 H2  WN8 30 
WN8 H12 H5  H 0 1 N N N N N N -14.156 14.120 43.036 1.560  -1.222 -1.140 H12 WN8 31 
WN8 H13 H6  H 0 1 N N N N N N -13.009 14.742 41.802 1.617  -2.980 -1.377 H13 WN8 32 
WN8 H15 H7  H 0 1 N N N N N N -13.594 16.944 42.167 1.184  -3.167 1.170  H15 WN8 33 
WN8 H14 H8  H 0 1 N N N N N N -14.026 16.662 43.888 0.752  -1.441 1.095  H14 WN8 34 
WN8 H17 H9  H 0 1 N N N N N N -15.746 16.592 41.522 -0.496 -3.669 -0.571 H17 WN8 35 
WN8 H16 H10 H 0 1 N N N N N N -16.202 16.481 43.256 -1.241 -2.898 0.849  H16 WN8 36 
WN8 H18 H11 H 0 1 N N N N N N -17.636 15.755 43.771 -3.372 -2.923 -0.586 H18 WN8 37 
WN8 H31 H12 H 0 1 N N N N N N -11.960 10.929 41.368 2.810  3.337  -0.978 H31 WN8 38 
WN8 H8  H13 H 0 1 N N N N N N -12.818 12.264 42.208 2.192  1.740  -1.463 H8  WN8 39 
WN8 H7  H14 H 0 1 N N N N N N -12.191 12.003 39.246 1.089  1.500  0.753  H7  WN8 40 
WN8 H6  H15 H 0 1 N N N N N N -12.770 13.524 40.006 1.682  3.113  1.213  H6  WN8 41 
WN8 H   H16 H 0 1 N N N N N N -14.226 10.837 40.126 0.332  3.138  -1.393 H   WN8 42 
WN8 H4  H17 H 0 1 N N N N N N -14.133 11.740 37.831 0.887  5.137  -0.041 H4  WN8 43 
WN8 H5  H18 H 0 1 N N N N N N -15.790 11.895 38.507 -0.868 5.018  -0.311 H5  WN8 44 
WN8 H3  H19 H 0 1 N N N N N N -14.717 13.333 38.422 -0.176 4.554  1.262  H3  WN8 45 
WN8 H20 H20 H 0 1 N N N N N N -20.486 12.622 43.246 -5.523 0.519  0.747  H20 WN8 46 
WN8 H10 H21 H 0 1 N N N N N N -10.598 16.492 42.024 5.801  -0.181 -0.574 H10 WN8 47 
WN8 H11 H22 H 0 1 N N N N N N -11.684 15.670 45.449 4.197  -2.477 1.567  H11 WN8 48 
WN8 H19 H23 H 0 1 N N N N N N -19.660 15.776 44.659 -5.809 -2.435 1.077  H19 WN8 49 
WN8 H21 H24 H 0 1 N N N N N N -18.251 10.813 41.202 -3.316 2.382  1.457  H21 WN8 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WN8 O6  C17 DOUB N N 1  
WN8 C17 O7  SING N N 2  
WN8 C17 C16 SING N N 3  
WN8 O7  C1  SING N N 4  
WN8 C1  C   SING N N 5  
WN8 C1  C2  SING N N 6  
WN8 C16 C15 DOUB Y N 7  
WN8 C16 C11 SING Y N 8  
WN8 C15 O5  SING N N 9  
WN8 C15 C14 SING Y N 10 
WN8 C14 C13 DOUB Y N 11 
WN8 C13 O4  SING N N 12 
WN8 C13 C12 SING Y N 13 
WN8 C12 C11 DOUB Y N 14 
WN8 C11 O3  SING N N 15 
WN8 O3  C10 SING N N 16 
WN8 C10 C9  SING N N 17 
WN8 C9  C8  SING N N 18 
WN8 C8  C7  SING N N 19 
WN8 C7  O2  SING N N 20 
WN8 C7  C6  SING N N 21 
WN8 C6  O1  SING N N 22 
WN8 C6  C5  SING N N 23 
WN8 C5  O   DOUB N N 24 
WN8 C5  C4  SING N N 25 
WN8 C4  C3  SING N N 26 
WN8 C3  C2  SING N N 27 
WN8 C4  H41 SING N N 28 
WN8 C4  H9  SING N N 29 
WN8 C6  H1  SING N N 30 
WN8 C7  H2  SING N N 31 
WN8 C8  H12 SING N N 32 
WN8 C8  H13 SING N N 33 
WN8 C9  H15 SING N N 34 
WN8 C9  H14 SING N N 35 
WN8 C10 H17 SING N N 36 
WN8 C10 H16 SING N N 37 
WN8 C12 H18 SING N N 38 
WN8 C3  H31 SING N N 39 
WN8 C3  H8  SING N N 40 
WN8 C2  H7  SING N N 41 
WN8 C2  H6  SING N N 42 
WN8 C1  H   SING N N 43 
WN8 C   H4  SING N N 44 
WN8 C   H5  SING N N 45 
WN8 C   H3  SING N N 46 
WN8 C14 H20 SING N N 47 
WN8 O1  H10 SING N N 48 
WN8 O2  H11 SING N N 49 
WN8 O4  H19 SING N N 50 
WN8 O5  H21 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WN8 InChI            InChI                1.06  "InChI=1S/C18H24O8/c1-10-4-2-5-12(20)17(23)13(21)6-3-7-25-15-9-11(19)8-14(22)16(15)18(24)26-10/h8-10,13,17,19,21-23H,2-7H2,1H3/t10-,13?,17+/m0/s1" 
WN8 InChIKey         InChI                1.06  OHMMQAZYIHWRGL-PFRTXPISSA-N                                                                                                                        
WN8 SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CCCC(=O)[C@@H](O)[C@@H](O)CCCOc2cc(O)cc(O)c2C(=O)O1"                                                                                       
WN8 SMILES           CACTVS               3.385 "C[CH]1CCCC(=O)[CH](O)[CH](O)CCCOc2cc(O)cc(O)c2C(=O)O1"                                                                                            
WN8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCCC(=O)[C@H]([C@H](CCCOc2cc(cc(c2C(=O)O1)O)O)O)O"                                                                                         
WN8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CCCC(=O)C(C(CCCOc2cc(cc(c2C(=O)O1)O)O)O)O"                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           WN8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(6~{S},7~{S},12~{S})-12-methyl-6,7,16,18-tetrakis(oxidanyl)-2,13-dioxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-8,14-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WN8 "Create component" 2023-10-09 PDBE 
WN8 "Initial release"  2025-04-16 RCSB 
# 
