data_XM8
# 
_chem_comp.id                                    XM8 
_chem_comp.name                                  "7-[(1~{S})-1-[[4-(aminomethyl)phenyl]methoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H27 Cl N2 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        527.032 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XM8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PAH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XM8 C11  C1  C  0 1 Y N N N N N -29.260 -13.225 14.959 9.115  -0.152 -0.553 C11  XM8 1  
XM8 C12  C2  C  0 1 Y N N N N N -28.131 -12.550 14.525 7.972  0.621  -0.461 C12  XM8 2  
XM8 C13  C3  C  0 1 Y N N N N N -22.829 -12.844 13.499 2.384  0.447  -0.757 C13  XM8 3  
XM8 C17  C4  C  0 1 N N N N N N -22.666 -9.412  9.876  -1.708 2.473  1.289  C17  XM8 4  
XM8 O19  O1  O  0 1 N N N N N N -23.018 -9.405  8.664  -2.897 2.225  1.345  O19  XM8 5  
XM8 C20  C5  C  0 1 Y N N N N N -22.132 -11.959 10.088 -1.185 0.432  -0.117 C20  XM8 6  
XM8 C21  C6  C  0 1 Y N N N N N -21.678 -12.321 8.661  -2.552 -0.122 -0.224 C21  XM8 7  
XM8 C25  C7  C  0 1 Y N N N N N -20.814 -12.960 6.115  -5.112 -1.160 -0.425 C25  XM8 8  
XM8 C26  C8  C  0 1 N N N N N N -20.301 -13.275 4.686  -6.505 -1.726 -0.534 C26  XM8 9  
XM8 C28  C9  C  0 1 N N N N N N -18.221 -14.627 3.098  -9.097 -1.954 0.547  C28  XM8 10 
XM8 C01  C10 C  0 1 N N N N N N -22.296 -12.163 15.899 3.602  2.512  -1.389 C01  XM8 11 
XM8 C02  C11 C  0 1 N N S N N N -23.306 -12.050 14.744 3.521  1.362  -0.383 C02  XM8 12 
XM8 C04  C12 C  0 1 N N N N N N -25.633 -12.244 14.348 5.725  1.111  0.526  C04  XM8 13 
XM8 C05  C13 C  0 1 Y N N N N N -26.868 -13.008 14.849 6.971  0.269  0.425  C05  XM8 14 
XM8 C06  C14 C  0 1 Y N N N N N -26.729 -14.145 15.615 7.112  -0.855 1.217  C06  XM8 15 
XM8 C07  C15 C  0 1 Y N N N N N -27.855 -14.828 16.052 8.254  -1.627 1.124  C07  XM8 16 
XM8 C08  C16 C  0 1 Y N N N N N -29.118 -14.375 15.714 9.257  -1.275 0.240  C08  XM8 17 
XM8 C09  C17 C  0 1 N N N N N N -30.342 -15.116 16.207 10.500 -2.120 0.135  C09  XM8 18 
XM8 C14  C18 C  0 1 Y N N N N N -22.642 -12.182 12.265 1.088  0.735  -0.336 C14  XM8 19 
XM8 C16  C19 C  0 1 Y N N N N N -22.523 -10.730 10.601 -0.807 1.582  0.553  C16  XM8 20 
XM8 C22  C20 C  0 1 Y N N N N N -20.703 -11.554 8.081  -3.544 0.587  -0.904 C22  XM8 21 
XM8 C23  C21 C  0 1 Y N N N N N -20.301 -11.883 6.817  -4.818 0.064  -1.001 C23  XM8 22 
XM8 C31  C22 C  0 1 Y N N N N N -21.794 -13.742 6.712  -4.132 -1.869 0.245  C31  XM8 23 
XM8 C32  C23 C  0 1 Y N N N N N -22.222 -13.412 8.000  -2.855 -1.357 0.349  C32  XM8 24 
XM8 C33  C24 C  0 1 Y N N N N N -22.204 -12.882 11.143 0.039  -0.129 -0.701 C33  XM8 25 
XM8 C34  C25 C  0 1 Y N N N N N -21.925 -14.248 11.211 0.305  -1.260 -1.477 C34  XM8 26 
XM8 C35  C26 C  0 1 Y N N N N N -22.110 -14.904 12.429 1.584  -1.523 -1.878 C35  XM8 27 
XM8 C36  C27 C  0 1 Y N N N N N -22.562 -14.204 13.561 2.623  -0.674 -1.521 C36  XM8 28 
XM8 N10  N1  N  0 1 N N N N N N -30.591 -14.663 17.547 11.509 -1.626 1.081  N10  XM8 29 
XM8 N15  N2  N  0 1 Y N N N N N -22.813 -10.891 11.899 0.555  1.755  0.417  N15  XM8 30 
XM8 O03  O2  O  0 1 N N N N N N -24.552 -12.533 15.215 4.748  0.629  -0.399 O03  XM8 31 
XM8 O18  O3  O  0 1 N N N N N N -22.513 -8.348  10.535 -1.218 3.569  1.905  O18  XM8 32 
XM8 O29  O4  O  0 1 N N N N N N -19.467 -15.812 5.250  -6.951 -1.738 2.065  O29  XM8 33 
XM8 O30  O5  O  0 1 N N N N N N -17.894 -14.189 5.683  -7.655 0.239  0.797  O30  XM8 34 
XM8 S27  S1  S  0 1 N N N N N N -18.981 -14.533 4.758  -7.495 -1.171 0.881  S27  XM8 35 
XM8 CL24 CL1 CL 0 0 N N N N N N -19.077 -10.873 6.101  -6.054 0.944  -1.846 CL24 XM8 36 
XM8 H111 H1  H  0 0 N N N N N N -30.244 -12.856 14.710 9.896  0.121  -1.248 H111 XM8 37 
XM8 H121 H2  H  0 0 N N N N N N -28.239 -11.657 13.927 7.862  1.498  -1.080 H121 XM8 38 
XM8 H261 H3  H  0 0 N N N N N N -19.903 -12.356 4.231  -6.966 -1.379 -1.459 H261 XM8 39 
XM8 H262 H4  H  0 0 N N N N N N -21.134 -13.655 4.076  -6.456 -2.815 -0.539 H262 XM8 40 
XM8 H281 H5  H  0 0 N N N N N N -17.418 -15.378 3.104  -8.972 -3.036 0.511  H281 XM8 41 
XM8 H283 H6  H  0 0 N N N N N N -18.985 -14.913 2.361  -9.800 -1.696 1.340  H283 XM8 42 
XM8 H282 H7  H  0 0 N N N N N N -17.803 -13.645 2.830  -9.482 -1.601 -0.409 H282 XM8 43 
XM8 H011 H8  H  0 0 N N N N N N -22.662 -11.591 16.764 3.773  2.111  -2.388 H011 XM8 44 
XM8 H012 H9  H  0 0 N N N N N N -22.179 -13.220 16.181 2.667  3.072  -1.377 H012 XM8 45 
XM8 H013 H10 H  0 0 N N N N N N -21.325 -11.759 15.577 4.424  3.174  -1.118 H013 XM8 46 
XM8 H021 H11 H  0 0 N N N N N N -23.395 -10.990 14.463 3.351  1.764  0.615  H021 XM8 47 
XM8 H041 H12 H  0 0 N N N N N N -25.386 -12.565 13.325 5.327  1.051  1.539  H041 XM8 48 
XM8 H042 H13 H  0 0 N N N N N N -25.836 -11.163 14.354 5.967  2.148  0.291  H042 XM8 49 
XM8 H061 H14 H  0 0 N N N N N N -25.744 -14.504 15.875 6.329  -1.129 1.909  H061 XM8 50 
XM8 H071 H15 H  0 0 N N N N N N -27.745 -15.716 16.658 8.365  -2.505 1.744  H071 XM8 51 
XM8 H092 H16 H  0 0 N N N N N N -31.206 -14.890 15.564 10.256 -3.156 0.371  H092 XM8 52 
XM8 H091 H17 H  0 0 N N N N N N -30.155 -16.200 16.202 10.894 -2.062 -0.880 H091 XM8 53 
XM8 H221 H18 H  0 0 N N N N N N -20.266 -10.717 8.605  -3.316 1.543  -1.353 H221 XM8 54 
XM8 H311 H19 H  0 0 N N N N N N -22.217 -14.588 6.191  -4.367 -2.824 0.692  H311 XM8 55 
XM8 H321 H20 H  0 0 N N N N N N -22.981 -14.010 8.484  -2.090 -1.913 0.872  H321 XM8 56 
XM8 H341 H21 H  0 0 N N N N N N -21.574 -14.785 10.342 -0.498 -1.925 -1.758 H341 XM8 57 
XM8 H351 H22 H  0 0 N N N N N N -21.903 -15.962 12.503 1.788  -2.398 -2.478 H351 XM8 58 
XM8 H361 H23 H  0 0 N N N N N N -22.703 -14.732 14.492 3.628  -0.893 -1.849 H361 XM8 59 
XM8 H102 H24 H  0 0 N N N N N N -31.396 -15.130 17.913 12.353 -2.177 1.030  H102 XM8 60 
XM8 H101 H26 H  0 0 N N N N N N -29.798 -14.867 18.121 11.705 -0.649 0.924  H101 XM8 61 
XM8 H151 H27 H  0 0 N N N N N N -23.114 -10.160 12.511 1.063  2.489  0.797  H151 XM8 62 
XM8 H2   H28 H  0 1 N N N N N N -22.701 -7.601  9.979  -1.888 4.094  2.364  H2   XM8 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XM8 C28  S27  SING N N 1  
XM8 C26  S27  SING N N 2  
XM8 C26  C25  SING N N 3  
XM8 S27  O29  DOUB N N 4  
XM8 S27  O30  DOUB N N 5  
XM8 CL24 C23  SING N N 6  
XM8 C25  C31  DOUB Y N 7  
XM8 C25  C23  SING Y N 8  
XM8 C31  C32  SING Y N 9  
XM8 C23  C22  DOUB Y N 10 
XM8 C32  C21  DOUB Y N 11 
XM8 C22  C21  SING Y N 12 
XM8 C21  C20  SING N N 13 
XM8 O19  C17  DOUB N N 14 
XM8 C17  O18  SING N N 15 
XM8 C17  C16  SING N N 16 
XM8 C20  C16  DOUB Y N 17 
XM8 C20  C33  SING Y N 18 
XM8 C16  N15  SING Y N 19 
XM8 C33  C34  DOUB Y N 20 
XM8 C33  C14  SING Y N 21 
XM8 C34  C35  SING Y N 22 
XM8 N15  C14  SING Y N 23 
XM8 C14  C13  DOUB Y N 24 
XM8 C35  C36  DOUB Y N 25 
XM8 C13  C36  SING Y N 26 
XM8 C13  C02  SING N N 27 
XM8 C04  C05  SING N N 28 
XM8 C04  O03  SING N N 29 
XM8 C12  C05  DOUB Y N 30 
XM8 C12  C11  SING Y N 31 
XM8 C02  O03  SING N N 32 
XM8 C02  C01  SING N N 33 
XM8 C05  C06  SING Y N 34 
XM8 C11  C08  DOUB Y N 35 
XM8 C06  C07  DOUB Y N 36 
XM8 C08  C07  SING Y N 37 
XM8 C08  C09  SING N N 38 
XM8 C09  N10  SING N N 39 
XM8 C11  H111 SING N N 40 
XM8 C12  H121 SING N N 41 
XM8 C26  H261 SING N N 42 
XM8 C26  H262 SING N N 43 
XM8 C28  H281 SING N N 44 
XM8 C28  H283 SING N N 45 
XM8 C28  H282 SING N N 46 
XM8 C01  H011 SING N N 47 
XM8 C01  H012 SING N N 48 
XM8 C01  H013 SING N N 49 
XM8 C02  H021 SING N N 50 
XM8 C04  H041 SING N N 51 
XM8 C04  H042 SING N N 52 
XM8 C06  H061 SING N N 53 
XM8 C07  H071 SING N N 54 
XM8 C09  H092 SING N N 55 
XM8 C09  H091 SING N N 56 
XM8 C22  H221 SING N N 57 
XM8 C31  H311 SING N N 58 
XM8 C32  H321 SING N N 59 
XM8 C34  H341 SING N N 60 
XM8 C35  H351 SING N N 61 
XM8 C36  H361 SING N N 62 
XM8 N10  H102 SING N N 63 
XM8 N10  H101 SING N N 64 
XM8 N15  H151 SING N N 65 
XM8 O18  H2   SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XM8 InChI            InChI                1.06  "InChI=1S/C27H27ClN2O5S/c1-16(35-14-18-8-6-17(13-29)7-9-18)21-4-3-5-22-24(26(27(31)32)30-25(21)22)19-10-11-20(23(28)12-19)15-36(2,33)34/h3-12,16,30H,13-15,29H2,1-2H3,(H,31,32)/t16-/m0/s1" 
XM8 InChIKey         InChI                1.06  JCXDRPGSXCBCFR-INIZCTEOSA-N                                                                                                                                                                 
XM8 SMILES_CANONICAL CACTVS               3.385 "C[C@H](OCc1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4"                                                                                                                 
XM8 SMILES           CACTVS               3.385 "C[CH](OCc1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4"                                                                                                                  
XM8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)OCc4ccc(cc4)CN"                                                                                                                  
XM8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)OCc4ccc(cc4)CN"                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           XM8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[[4-(aminomethyl)phenyl]methoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XM8 "Create component" 2023-06-08 PDBE 
XM8 "Initial release"  2024-06-26 RCSB 
# 
