data_DP9
# 
_chem_comp.id                                    DP9 
_chem_comp.name                                  "L-N(OMEGA)-NITROARGININE-(4R)-AMINO-L-PROLINE AMIDE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H22 N8 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-05-06 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        330.344 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DP9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1P6J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DP9 NH2    NH2    N 0  1 N N N 14.617 -0.311 23.832 -5.179 -1.160 -1.088 NH2    DP9 1  
DP9 CZ     CZ     C 0  1 N N N 13.683 0.518  23.367 -5.320 -0.358 -0.070 CZ     DP9 2  
DP9 NH1    NH1    N 0  1 N N N 13.849 1.225  22.243 -6.540 -0.246 0.553  NH1    DP9 3  
DP9 NO     NO     N 1  1 N N N 14.862 1.260  21.347 -7.598 -1.085 0.178  NO     DP9 4  
DP9 O2     O2     O -1 1 N N N 14.725 2.030  20.328 -7.370 -2.220 -0.200 O2     DP9 5  
DP9 O3     O3     O 0  1 N N N 15.874 0.607  21.455 -8.745 -0.678 0.229  O3     DP9 6  
DP9 NE     NE     N 0  1 N N N 12.566 0.605  24.085 -4.248 0.375  0.381  NE     DP9 7  
DP9 CD     CD     C 0  1 N N N 11.338 1.401  23.885 -2.947 0.255  -0.282 CD     DP9 8  
DP9 CG     CG     C 0  1 N N N 10.264 0.556  23.169 -1.935 1.170  0.410  CG     DP9 9  
DP9 CB     CB     C 0  1 N N N 10.069 -0.850 23.795 -0.577 1.045  -0.283 CB     DP9 10 
DP9 CA     CA     C 0  1 N N S 9.372  -0.847 25.180 0.435  1.960  0.410  CA     DP9 11 
DP9 N      N      N 0  1 N N N 9.728  -2.121 25.823 0.033  3.361  0.228  N      DP9 12 
DP9 C      C      C 0  1 N N N 7.834  -0.670 25.093 1.800  1.746  -0.193 C      DP9 13 
DP9 O      O      O 0  1 N N N 7.102  -1.642 24.862 2.227  2.525  -1.019 O      DP9 14 
DP9 "N2'"  "N2'"  N 0  1 N N N 7.367  0.577  25.267 2.546  0.690  0.186  "N2'"  DP9 15 
DP9 "CG'"  "CG'"  C 0  1 N N R 5.904  0.985  25.284 3.873  0.482  -0.400 "CG'"  DP9 16 
DP9 "CD'"  "CD'"  C 0  1 N N N 5.066  0.346  26.438 4.942  1.247  0.410  "CD'"  DP9 17 
DP9 "N'"   "N'"   N 0  1 N N N 5.157  1.359  27.517 6.127  0.351  0.404  "N'"   DP9 18 
DP9 "CA'"  "CA'"  C 0  1 N N S 5.545  2.679  27.003 5.557  -1.011 0.567  "CA'"  DP9 19 
DP9 "C'"   "C'"   C 0  1 N N N 4.553  3.789  27.384 6.526  -2.050 0.065  "C'"   DP9 20 
DP9 "O'"   "O'"   O 0  1 N N N 3.414  3.540  27.778 7.427  -1.729 -0.682 "O'"   DP9 21 
DP9 "N1'"  "N1'"  N 0  1 N N N 4.887  5.064  27.300 6.393  -3.336 0.446  "N1'"  DP9 22 
DP9 "CB'"  "CB'"  C 0  1 N N N 5.695  2.490  25.488 4.276  -1.003 -0.299 "CB'"  DP9 23 
DP9 HH2    HH2    H 0  1 N N N 14.424 -1.247 23.476 -5.954 -1.604 -1.466 HH2    DP9 24 
DP9 HH1    HH1    H 0  1 N N N 13.726 2.196  22.530 -6.669 0.414  1.253  HH1    DP9 25 
DP9 HNE    HNE    H 0  1 N N N 12.881 0.848  25.023 -4.353 0.972  1.139  HNE    DP9 26 
DP9 HD1    1HD    H 0  1 N N N 10.959 1.830  24.842 -3.045 0.547  -1.328 HD1    DP9 27 
DP9 HD2    2HD    H 0  1 N N N 11.543 2.355  23.346 -2.603 -0.777 -0.224 HD2    DP9 28 
DP9 HG1    1HG    H 0  1 N N N 9.295  1.105  23.121 -1.838 0.878  1.456  HG1    DP9 29 
DP9 HG2    2HG    H 0  1 N N N 10.484 0.476  22.079 -2.279 2.203  0.352  HG2    DP9 30 
DP9 HB1    1HB    H 0  1 N N N 9.523  -1.517 23.087 -0.675 1.337  -1.329 HB1    DP9 31 
DP9 HB2    2HB    H 0  1 N N N 11.044 -1.387 23.852 -0.233 0.013  -0.225 HB2    DP9 32 
DP9 HA     HA     H 0  1 N N N 9.720  0.029  25.775 0.467  1.726  1.474  HA     DP9 33 
DP9 HN1    1HN    H 0  1 N N N 9.269  -2.119 26.734 0.777  3.928  0.607  HN1    DP9 34 
DP9 HN2    2HN    H 0  1 N N N 10.734 -2.281 25.875 0.017  3.532  -0.767 HN2    DP9 35 
DP9 "H2'"  "H2'"  H 0  1 N N N 8.141  1.229  25.389 2.205  0.067  0.847  "H2'"  DP9 36 
DP9 "HG'"  "HG'"  H 0  1 N N N 5.565  0.630  24.282 3.882  0.808  -1.440 "HG'"  DP9 37 
DP9 "HD'1" "1HD'" H 0  0 N N N 4.026  0.060  26.154 5.179  2.195  -0.073 "HD'1" DP9 38 
DP9 "HD'2" "2HD'" H 0  0 N N N 5.388  -0.679 26.734 4.598  1.414  1.431  "HD'2" DP9 39 
DP9 "HN'"  "HN'"  H 0  1 N N N 5.784  1.052  28.260 6.647  0.551  1.245  "HN'"  DP9 40 
DP9 "HA'"  "HA'"  H 0  1 N N N 6.498  3.031  27.460 5.309  -1.196 1.612  "HA'"  DP9 41 
DP9 "H1'1" "1H1'" H 0  0 N N N 5.831  5.270  26.973 5.673  -3.592 1.043  "H1'1" DP9 42 
DP9 "H1'2" "2H1'" H 0  0 N N N 4.228  5.800  27.552 7.016  -4.005 0.123  "H1'2" DP9 43 
DP9 "HB'1" "1HB'" H 0  0 N N N 6.495  3.119  25.034 3.487  -1.577 0.187  "HB'1" DP9 44 
DP9 "HB'2" "2HB'" H 0  0 N N N 4.847  2.909  24.897 4.486  -1.408 -1.289 "HB'2" DP9 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DP9 NH2   CZ     DOUB N N 1  
DP9 NH2   HH2    SING N N 2  
DP9 CZ    NH1    SING N N 3  
DP9 CZ    NE     SING N N 4  
DP9 NH1   NO     SING N N 5  
DP9 NH1   HH1    SING N N 6  
DP9 NO    O2     SING N N 7  
DP9 NO    O3     DOUB N N 8  
DP9 NE    CD     SING N N 9  
DP9 NE    HNE    SING N N 10 
DP9 CD    CG     SING N N 11 
DP9 CD    HD1    SING N N 12 
DP9 CD    HD2    SING N N 13 
DP9 CG    CB     SING N N 14 
DP9 CG    HG1    SING N N 15 
DP9 CG    HG2    SING N N 16 
DP9 CB    CA     SING N N 17 
DP9 CB    HB1    SING N N 18 
DP9 CB    HB2    SING N N 19 
DP9 CA    N      SING N N 20 
DP9 CA    C      SING N N 21 
DP9 CA    HA     SING N N 22 
DP9 N     HN1    SING N N 23 
DP9 N     HN2    SING N N 24 
DP9 C     O      DOUB N N 25 
DP9 C     "N2'"  SING N N 26 
DP9 "N2'" "CG'"  SING N N 27 
DP9 "N2'" "H2'"  SING N N 28 
DP9 "CG'" "CD'"  SING N N 29 
DP9 "CG'" "CB'"  SING N N 30 
DP9 "CG'" "HG'"  SING N N 31 
DP9 "CD'" "N'"   SING N N 32 
DP9 "CD'" "HD'1" SING N N 33 
DP9 "CD'" "HD'2" SING N N 34 
DP9 "N'"  "CA'"  SING N N 35 
DP9 "N'"  "HN'"  SING N N 36 
DP9 "CA'" "C'"   SING N N 37 
DP9 "CA'" "CB'"  SING N N 38 
DP9 "CA'" "HA'"  SING N N 39 
DP9 "C'"  "O'"   DOUB N N 40 
DP9 "C'"  "N1'"  SING N N 41 
DP9 "N1'" "H1'1" SING N N 42 
DP9 "N1'" "H1'2" SING N N 43 
DP9 "CB'" "HB'1" SING N N 44 
DP9 "CB'" "HB'2" SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DP9 SMILES           ACDLabs              10.04 "O=C(NC1CC(C(=O)N)NC1)C(N)CCCNC(=[N@H])N[N+]([O-])=O"                                                                                                   
DP9 SMILES_CANONICAL CACTVS               3.341 "N[C@@H](CCCNC(=N)N[N+]([O-])=O)C(=O)N[C@H]1CN[C@@H](C1)C(N)=O"                                                                                         
DP9 SMILES           CACTVS               3.341 "N[CH](CCCNC(=N)N[N+]([O-])=O)C(=O)N[CH]1CN[CH](C1)C(N)=O"                                                                                              
DP9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H](CN[C@@H]1C(=O)N)NC(=O)[C@H](CCCNC(=N)N[N+](=O)[O-])N"                                                                                          
DP9 SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(CNC1C(=O)N)NC(=O)C(CCCNC(=N)N[N+](=O)[O-])N"                                                                                                       
DP9 InChI            InChI                1.03  "InChI=1S/C11H22N8O4/c12-7(2-1-3-15-11(14)18-19(22)23)10(21)17-6-4-8(9(13)20)16-5-6/h6-8,16H,1-5,12H2,(H2,13,20)(H,17,21)(H3,14,15,18)/t6-,7+,8+/m1/s1" 
DP9 InChIKey         InChI                1.03  IUFRDGFKAVLPFZ-CSMHCCOUSA-N                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DP9 "SYSTEMATIC NAME" ACDLabs              10.04 "(4R)-4-{[N~5~-(N-nitrocarbamimidoyl)-L-ornithyl]amino}-L-prolinamide"                              
DP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4R)-4-[[(2S)-2-amino-5-[(N-nitrocarbamimidoyl)amino]pentanoyl]amino]pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DP9 "Create component"  2003-05-06 RCSB 
DP9 "Modify descriptor" 2011-06-04 RCSB 
# 
