data_GC9
#

_chem_comp.id                                   GC9
_chem_comp.name                                 "2,6-anhydro-3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-L-altro-non-2-enonic acid"
_chem_comp.type                                 L-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H17 N O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-11-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       307.254
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GC9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MYV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GC9  C4    C4    C  0  1  N  N  S  -26.784  41.255  -27.216   0.731   1.956   0.666  C4    GC9   1  
GC9  C3    C3    C  0  1  N  N  N  -26.417  39.953  -26.858  -0.622   2.566   0.421  C3    GC9   2  
GC9  C2    C2    C  0  1  N  N  N  -25.933  39.034  -27.787  -1.656   1.851   0.003  C2    GC9   3  
GC9  C6    C6    C  0  1  N  N  R  -25.689  40.740  -29.351  -0.463  -0.191   0.292  C6    GC9   4  
GC9  C5    C5    C  0  1  N  N  R  -26.937  41.368  -28.724   0.812   0.596  -0.037  C5    GC9   5  
GC9  C1    C1    C  0  1  N  N  N  -25.597  37.731  -27.426  -2.946   2.534  -0.201  C1    GC9   6  
GC9  C7    C7    C  0  1  N  N  S  -25.641  41.014  -30.851  -0.387  -1.582  -0.340  C7    GC9   7  
GC9  C8    C8    C  0  1  N  N  R  -24.397  40.401  -31.502  -1.673  -2.353  -0.034  C8    GC9   8  
GC9  C9    C9    C  0  1  N  N  N  -24.401  40.725  -33.089  -1.547  -3.785  -0.558  C9    GC9   9  
GC9  C10   C10   C  0  1  N  N  N  -27.907  43.525  -29.930   3.187   0.056  -0.133  C10   GC9  10  
GC9  C11   C11   C  0  1  N  N  N  -27.526  44.937  -30.141   4.392  -0.700   0.361  C11   GC9  11  
GC9  N5    N5    N  0  1  N  N  N  -27.069  42.767  -29.176   1.985  -0.139   0.444  N5    GC9  12  
GC9  O6    O6    O  0  1  N  N  N  -25.755  39.329  -29.104  -1.582   0.521  -0.245  O6    GC9  13  
GC9  O1B   O1B   O  0  1  N  N  N  -25.731  37.349  -26.244  -4.018   1.836  -0.625  O1B   GC9  14  
GC9  O1A   O1A   O  0  1  N  N  N  -25.157  36.939  -28.289  -3.043   3.726   0.013  O1A   GC9  15  
GC9  O7    O7    O  0  1  N  N  N  -25.608  42.443  -31.028   0.732  -2.290   0.199  O7    GC9  16  
GC9  O8    O8    O  0  1  N  N  N  -23.209  40.913  -30.911  -1.888  -2.379   1.378  O8    GC9  17  
GC9  O9    O9    O  0  1  N  N  N  -24.897  39.553  -33.635  -2.788  -4.470  -0.377  O9    GC9  18  
GC9  O10   O10   O  0  1  N  N  N  -28.905  43.078  -30.489   3.298   0.841  -1.051  O10   GC9  19  
GC9  O11   O11   O  0  1  N  N  N  -28.259  45.600  -28.998   5.538  -0.323  -0.404  O11   GC9  20  
GC9  O4    O4    O  0  1  N  N  N  -28.005  41.569  -26.536   1.745   2.820   0.149  O4    GC9  21  
GC9  H4    H4    H  0  1  N  N  N  -26.002  41.960  -26.899   0.881   1.821   1.737  H4    GC9  22  
GC9  H3    H3    H  0  1  N  N  N  -26.512  39.650  -25.826  -0.755   3.625   0.591  H3    GC9  23  
GC9  H6    H6    H  0  1  N  N  N  -24.794  41.170  -28.877  -0.571  -0.283   1.372  H6    GC9  24  
GC9  H5    H5    H  0  1  N  N  N  -27.821  40.794  -29.039   0.887   0.743  -1.114  H5    GC9  25  
GC9  H7    H7    H  0  1  N  N  N  -26.539  40.591  -31.324  -0.270  -1.485  -1.420  H7    GC9  26  
GC9  H8    H8    H  0  1  N  N  N  -24.439  39.308  -31.384  -2.516  -1.861  -0.520  H8    GC9  27  
GC9  H91   H91   H  0  1  N  N  N  -23.385  40.934  -33.454  -1.295  -3.763  -1.618  H91   GC9  28  
GC9  H92   H92   H  0  1  N  N  N  -25.056  41.578  -33.318  -0.762  -4.305  -0.009  H92   GC9  29  
GC9  H112  H112  H  0  0  N  N  N  -26.438  45.079  -30.061   4.563  -0.465   1.412  H112  GC9  30  
GC9  H111  H111  H  0  0  N  N  N  -27.874  45.309  -31.116   4.219  -1.771   0.253  H111  GC9  31  
GC9  HN5   HN5   H  0  1  N  N  N  -26.317  43.323  -28.821   1.895  -0.767   1.178  HN5   GC9  32  
GC9  HO1B  HO1B  H  0  0  N  N  N  -25.457  36.442  -26.171  -4.842   2.326  -0.745  HO1B  GC9  33  
GC9  HO7   HO7   H  0  1  N  N  N  -26.377  42.830  -30.626   0.694  -2.413   1.157  HO7   GC9  34  
GC9  HO8   HO8   H  0  1  N  N  N  -23.210  40.721  -29.981  -1.175  -2.803   1.877  HO8   GC9  35  
GC9  HO9   HO9   H  0  1  N  N  N  -24.941  39.637  -34.580  -2.781  -5.385  -0.687  HO9   GC9  36  
GC9  HO11  HO11  H  0  0  N  N  N  -28.096  46.536  -29.017   6.353  -0.772  -0.140  HO11  GC9  37  
GC9  HO4   HO4   H  0  1  N  N  N  -27.875  41.489  -25.598   1.753   3.701   0.549  HO4   GC9  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GC9  O9   C9    SING  N  N   1  
GC9  C9   C8    SING  N  N   2  
GC9  C8   O8    SING  N  N   3  
GC9  C8   C7    SING  N  N   4  
GC9  O7   C7    SING  N  N   5  
GC9  C7   C6    SING  N  N   6  
GC9  O10  C10   DOUB  N  N   7  
GC9  C11  C10   SING  N  N   8  
GC9  C11  O11   SING  N  N   9  
GC9  C10  N5    SING  N  N  10  
GC9  C6   O6    SING  N  N  11  
GC9  C6   C5    SING  N  N  12  
GC9  N5   C5    SING  N  N  13  
GC9  O6   C2    SING  N  N  14  
GC9  C5   C4    SING  N  N  15  
GC9  O1A  C1    DOUB  N  N  16  
GC9  C2   C1    SING  N  N  17  
GC9  C2   C3    DOUB  N  N  18  
GC9  C1   O1B   SING  N  N  19  
GC9  C4   C3    SING  N  N  20  
GC9  C4   O4    SING  N  N  21  
GC9  C4   H4    SING  N  N  22  
GC9  C3   H3    SING  N  N  23  
GC9  C6   H6    SING  N  N  24  
GC9  C5   H5    SING  N  N  25  
GC9  C7   H7    SING  N  N  26  
GC9  C8   H8    SING  N  N  27  
GC9  C9   H91   SING  N  N  28  
GC9  C9   H92   SING  N  N  29  
GC9  C11  H112  SING  N  N  30  
GC9  C11  H111  SING  N  N  31  
GC9  N5   HN5   SING  N  N  32  
GC9  O1B  HO1B  SING  N  N  33  
GC9  O7   HO7   SING  N  N  34  
GC9  O8   HO8   SING  N  N  35  
GC9  O9   HO9   SING  N  N  36  
GC9  O11  HO11  SING  N  N  37  
GC9  O4   HO4   SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GC9  SMILES            ACDLabs               12.01  "C1(C=C(C(O)=O)OC(C1NC(CO)=O)C(C(O)CO)O)O"  
GC9  InChI             InChI                 1.03   "InChI=1S/C11H17NO9/c13-2-5(16)9(18)10-8(12-7(17)3-14)4(15)1-6(21-10)11(19)20/h1,4-5,8-10,13-16,18H,2-3H2,(H,12,17)(H,19,20)/t4-,5+,8+,9-,10+/m0/s1"  
GC9  InChIKey          InChI                 1.03   FDONZIZJWIPGCO-CYVDNQRASA-N  
GC9  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H](O)[C@H](O)[C@@H]1OC(=C[C@H](O)[C@H]1NC(=O)CO)C(O)=O"  
GC9  SMILES            CACTVS                3.385  "OC[CH](O)[CH](O)[CH]1OC(=C[CH](O)[CH]1NC(=O)CO)C(O)=O"  
GC9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1=C(O[C@H]([C@@H]([C@H]1O)NC(=O)CO)[C@H]([C@@H](CO)O)O)C(=O)O"  
GC9  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=C(OC(C(C1O)NC(=O)CO)C(C(CO)O)O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GC9  "SYSTEMATIC NAME"  ACDLabs               12.01  "2,6-anhydro-3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-L-altro-non-2-enonic acid"  
GC9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  
;(2~{R},3~{R},4~{S})-4-oxidanyl-3-(2-oxidanylethanoylamino)-2-[(1~{S},2~{R})-1,2,3-tris(oxidanyl)propyl]-3,4-dihydro-2~{
H}-pyran-6-carboxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GC9  "CARBOHYDRATE ISOMER"                  L             PDB  ?  
GC9  "CARBOHYDRATE RING"                    dihydropyran  PDB  ?  
GC9  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose        PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GC9  "Create component"          2018-11-05  RCSB  
GC9  "Initial release"           2019-10-02  RCSB  
GC9  "Other modification"        2020-04-11  RCSB  
GC9  "Other modification"        2020-07-03  RCSB  
GC9  "Modify component atom id"  2020-07-17  RCSB  
##
