data_GS9
#

_chem_comp.id                                   GS9
_chem_comp.name                                 "naphthalen-2-yl 1-thio-beta-D-galactopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C16 H18 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "naphthalen-2-yl 1-thio-beta-D-galactoside; naphthalen-2-yl 1-thio-D-galactoside; naphthalen-2-yl 1-thio-galactoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-11-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       322.376
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GS9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4A6S
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GS9  "naphthalen-2-yl 1-thio-beta-D-galactoside"  PDB  ?  
2  GS9  "naphthalen-2-yl 1-thio-D-galactoside"       PDB  ?  
3  GS9  "naphthalen-2-yl 1-thio-galactoside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GS9  C1   C1    C  0  1  N  N  S  -16.647   1.862  -3.226  -1.424   0.680   0.260  C1   GS9   1  
GS9  O5   O5    O  0  1  N  N  N  -16.875   1.542  -1.846  -1.473  -0.613  -0.346  O5   GS9   2  
GS9  S1   S1    S  0  1  N  N  N  -17.964   2.994  -3.768  -0.149   1.681  -0.554  S1   GS9   3  
GS9  C2   C2    C  0  1  N  N  R  -15.238   2.463  -3.374  -2.784   1.365   0.109  C2   GS9   4  
GS9  O2   O2    O  0  1  N  N  N  -14.942   2.952  -4.683  -2.756   2.634   0.765  O2   GS9   5  
GS9  C3   C3    C  0  1  N  N  S  -14.269   1.360  -3.017  -3.864   0.484   0.746  C3   GS9   6  
GS9  O3   O3    O  0  1  N  N  N  -12.936   1.820  -3.155  -5.147   1.080   0.546  O3   GS9   7  
GS9  C4   C4    C  0  1  N  N  R  -14.480   1.078  -1.545  -3.833  -0.899   0.088  C4   GS9   8  
GS9  O4   O4    O  0  1  N  N  N  -14.215   2.258  -0.818  -4.152  -0.775  -1.300  O4   GS9   9  
GS9  C5   C5    C  0  1  N  N  R  -15.918   0.619  -1.280  -2.431  -1.497   0.239  C5   GS9  10  
GS9  C80  C80   C  0  1  Y  N  N  -20.335   2.470  -4.821   1.286  -0.334   0.626  C80  GS9  11  
GS9  O6   O6    O  0  1  N  N  N  -17.513   0.083   0.381  -1.105  -3.462  -0.230  O6   GS9  12  
GS9  C6   C6    C  0  1  N  N  N  -16.163   0.473   0.204  -2.375  -2.852  -0.468  C6   GS9  13  
GS9  C90  C90   C  0  1  Y  N  N  -21.475   1.700  -5.174   2.419  -1.012   0.948  C90  GS9  14  
GS9  C7   C7    C  0  1  Y  N  N  -19.223   1.977  -4.105   1.340   0.828  -0.155  C7   GS9  15  
GS9  C8   C8    C  0  1  Y  N  N  -19.248   0.598  -3.738   2.547   1.310  -0.615  C8   GS9  16  
GS9  C9   C9    C  0  1  Y  N  N  -20.356  -0.226  -4.063   3.731   0.627  -0.295  C9   GS9  17  
GS9  C14  C14   C  0  1  Y  N  N  -21.517   0.352  -4.816   3.667  -0.548   0.496  C14  GS9  18  
GS9  C13  C13   C  0  1  Y  N  N  -22.610  -0.475  -5.138   4.854  -1.229   0.814  C13  GS9  19  
GS9  C12  C12   C  0  1  Y  N  N  -22.610  -1.824  -4.749   6.046  -0.754   0.360  C12  GS9  20  
GS9  C11  C11   C  0  1  Y  N  N  -21.525  -2.375  -4.041   6.109   0.400  -0.418  C11  GS9  21  
GS9  C10  C10   C  0  1  Y  N  N  -20.415  -1.587  -3.704   4.981   1.087  -0.746  C10  GS9  22  
GS9  H1   H1    H  0  1  N  N  N  -16.731   0.965  -3.857  -1.184   0.576   1.318  H1   GS9  23  
GS9  H2   H2    H  0  1  N  N  N  -15.131   3.276  -2.641  -3.006   1.506  -0.948  H2   GS9  24  
GS9  H5   H5    H  0  1  N  N  N  -16.050  -0.367  -1.748  -2.205  -1.629   1.297  H5   GS9  25  
GS9  HO2  HA    H  0  1  N  Y  N  -14.060   3.306  -4.698  -2.090   3.242   0.416  HO2  GS9  26  
GS9  H3   H3    H  0  1  N  N  N  -14.463   0.460  -3.618  -3.671   0.385   1.814  H3   GS9  27  
GS9  H4   H4    H  0  1  N  N  N  -13.793   0.277  -1.235  -4.561  -1.549   0.572  H4   GS9  28  
GS9  HO4  HB    H  0  1  N  Y  N  -14.344   2.095   0.109  -5.025  -0.397  -1.470  HO4  GS9  29  
GS9  H80  H80   H  0  1  N  N  N  -20.318   3.507  -5.122   0.330  -0.698   0.973  H80  GS9  30  
GS9  H90  H90   H  0  1  N  N  N  -22.296   2.151  -5.711   2.360  -1.906   1.551  H90  GS9  31  
GS9  H61  H61C  H  0  1  N  N  N  -15.494  -0.294   0.621  -3.166  -3.496  -0.082  H61  GS9  32  
GS9  H62  H62C  H  0  1  N  N  N  -15.981   1.433   0.710  -2.514  -2.709  -1.540  H62  GS9  33  
GS9  HO6  HC    H  0  1  N  Y  N  -17.695  -0.016   1.308  -0.999  -4.326  -0.650  HO6  GS9  34  
GS9  H8   H8    H  0  1  N  N  N  -18.410   0.175  -3.204   2.581   2.206  -1.217  H8   GS9  35  
GS9  H10  H10   H  0  1  N  N  N  -19.593  -2.030  -3.161   5.045   1.980  -1.349  H10  GS9  36  
GS9  H11  H11   H  0  1  N  N  N  -21.548  -3.416  -3.754   7.068   0.756  -0.765  H11  GS9  37  
GS9  H12  H12   H  0  1  N  N  N  -23.455  -2.449  -4.997   6.956  -1.280   0.607  H12  GS9  38  
GS9  HO3  HD    H  0  1  N  Y  N  -12.334   1.121  -2.929  -5.235   1.962   0.932  HO3  GS9  39  
GS9  H13  H13   H  0  1  N  N  N  -23.449  -0.071  -5.685   4.820  -2.125   1.416  H13  GS9  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GS9  C1   O5   SING  N  N   1  
GS9  C1   S1   SING  N  N   2  
GS9  C1   C2   SING  N  N   3  
GS9  O5   C5   SING  N  N   4  
GS9  S1   C7   SING  N  N   5  
GS9  C2   O2   SING  N  N   6  
GS9  C2   C3   SING  N  N   7  
GS9  C3   O3   SING  N  N   8  
GS9  C3   C4   SING  N  N   9  
GS9  C4   O4   SING  N  N  10  
GS9  C4   C5   SING  N  N  11  
GS9  C80  C90  DOUB  Y  N  12  
GS9  C80  C7   SING  Y  N  13  
GS9  C5   C6   SING  N  N  14  
GS9  C90  C14  SING  Y  N  15  
GS9  C13  C14  SING  Y  N  16  
GS9  O6   C6   SING  N  N  17  
GS9  C7   C8   DOUB  Y  N  18  
GS9  C8   C9   SING  Y  N  19  
GS9  C9   C10  SING  Y  N  20  
GS9  C9   C14  DOUB  Y  N  21  
GS9  C10  C11  DOUB  Y  N  22  
GS9  C11  C12  SING  Y  N  23  
GS9  C12  C13  DOUB  Y  N  24  
GS9  C1   H1   SING  N  N  25  
GS9  C2   H2   SING  N  N  26  
GS9  C5   H5   SING  N  N  27  
GS9  O3   HO3  SING  N  N  28  
GS9  O2   HO2  SING  N  N  29  
GS9  C3   H3   SING  N  N  30  
GS9  C4   H4   SING  N  N  31  
GS9  O4   HO4  SING  N  N  32  
GS9  C80  H80  SING  N  N  33  
GS9  C90  H90  SING  N  N  34  
GS9  C6   H61  SING  N  N  35  
GS9  C6   H62  SING  N  N  36  
GS9  O6   HO6  SING  N  N  37  
GS9  C8   H8   SING  N  N  38  
GS9  C10  H10  SING  N  N  39  
GS9  C11  H11  SING  N  N  40  
GS9  C12  H12  SING  N  N  41  
GS9  C13  H13  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GS9  SMILES            ACDLabs               12.01  "S(c1ccc2c(c1)cccc2)C3OC(C(O)C(O)C3O)CO"  
GS9  InChI             InChI                 1.03   "InChI=1S/C16H18O5S/c17-8-12-13(18)14(19)15(20)16(21-12)22-11-6-5-9-3-1-2-4-10(9)7-11/h1-7,12-20H,8H2/t12-,13+,14+,15-,16+/m1/s1"  
GS9  InChIKey          InChI                 1.03   UTPJJZURVZIAID-CWVYHPPDSA-N  
GS9  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](Sc2ccc3ccccc3c2)[C@H](O)[C@@H](O)[C@H]1O"  
GS9  SMILES            CACTVS                3.385  "OC[CH]1O[CH](Sc2ccc3ccccc3c2)[CH](O)[CH](O)[CH]1O"  
GS9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1ccc2cc(ccc2c1)S[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O"  
GS9  SMILES            "OpenEye OEToolkits"  1.9.2  "c1ccc2cc(ccc2c1)SC3C(C(C(C(O3)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GS9  "SYSTEMATIC NAME"  ACDLabs               12.01  "naphthalen-2-yl 1-thio-beta-D-galactopyranoside"  
GS9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-naphthalen-2-ylsulfanyl-oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GS9  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GS9  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GS9  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
GS9  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GS9  "Create component"          2011-11-08  EBI   
GS9  "Modify atom id"            2011-12-01  EBI   
GS9  "Initial release"           2012-10-12  RCSB  
GS9  "Modify descriptor"         2014-09-05  RCSB  
GS9  "Other modification"        2020-07-03  RCSB  
GS9  "Modify name"               2020-07-17  RCSB  
GS9  "Modify synonyms"           2020-07-17  RCSB  
GS9  "Modify internal type"      2020-07-17  RCSB  
GS9  "Modify linking type"       2020-07-17  RCSB  
GS9  "Modify atom id"            2020-07-17  RCSB  
GS9  "Modify component atom id"  2020-07-17  RCSB  
GS9  "Modify leaving atom flag"  2020-07-17  RCSB  
##
