data_II9
# 
_chem_comp.id                                    II9 
_chem_comp.name                                  "N-methyl-6-[(6-methylpyridine-2-carbonyl)amino]-2-phenyl-1H-benzimidazole-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H19 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-25 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        385.419 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     II9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SEX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
II9 C10 C1  C 0 1 Y N N 95.922 -10.682 10.798 -1.078 -2.033 0.082  C10 II9 1  
II9 C11 C2  C 0 1 Y N N 93.162 -10.601 11.393 -0.253 0.631  -0.184 C11 II9 2  
II9 C15 C3  C 0 1 Y N N 93.725 -13.712 7.570  -5.241 0.624  -0.108 C15 II9 3  
II9 C19 C4  C 0 1 Y N N 92.629 -5.827  15.461 6.011  0.981  -0.621 C19 II9 4  
II9 C20 C5  C 0 1 Y N N 91.149 -8.123  15.772 4.385  2.635  0.813  C20 II9 5  
II9 C21 C6  C 0 1 Y N N 90.956 -7.070  16.666 5.719  2.981  0.660  C21 II9 6  
II9 C22 C7  C 0 1 Y N N 92.467 -13.691 6.957  -6.242 -0.341 -0.000 C22 II9 7  
II9 C23 C8  C 0 1 Y N N 94.759 -14.489 7.036  -5.588 1.971  -0.227 C23 II9 8  
II9 C24 C9  C 0 1 Y N N 91.698 -5.901  16.498 6.541  2.136  -0.070 C24 II9 9  
II9 C25 C10 C 0 1 N N N 98.648 -8.382  13.300 1.898  -5.131 0.417  C25 II9 10 
II9 C26 C11 C 0 1 N N N 93.476 -4.599  15.241 6.900  0.060  -1.415 C26 II9 11 
II9 C27 C12 C 0 1 Y N N 92.225 -14.497 5.865  -7.568 0.040  -0.011 C27 II9 12 
II9 C28 C13 C 0 1 Y N N 94.496 -15.302 5.947  -6.918 2.339  -0.236 C28 II9 13 
II9 N1  N1  N 0 1 Y N N 93.038 -12.263 9.480  -2.755 1.084  -0.190 N1  II9 14 
II9 C2  C14 C 0 1 Y N N 93.959 -12.795 8.700  -3.817 0.223  -0.091 C2  II9 15 
II9 C3  C15 C 0 1 Y N N 95.437 -9.888  11.830 0.277  -1.720 0.026  C3  II9 16 
II9 N4  N2  N 0 1 Y N N 95.196 -12.299 9.013  -3.383 -1.007 0.019  N4  II9 17 
II9 C5  C16 C 0 1 Y N N 94.047 -9.851  12.133 0.688  -0.380 -0.107 C5  II9 18 
II9 C6  C17 C 0 1 Y N N 93.645 -11.413 10.359 -1.606 0.324  -0.135 C6  II9 19 
II9 C7  C18 C 0 1 Y N N 95.035 -11.436 10.077 -2.026 -1.015 -0.001 C7  II9 20 
II9 C8  C19 C 0 1 N N N 92.378 -9.025  13.750 2.500  1.069  0.395  C8  II9 21 
II9 N9  N3  N 0 1 N N N 93.578 -9.002  13.137 2.046  -0.071 -0.162 N9  II9 22 
II9 C12 C20 C 0 1 N N N 96.403 -9.025  12.538 1.284  -2.793 0.108  C12 II9 23 
II9 N13 N4  N 0 1 Y N N 92.797 -6.839  14.640 4.742  0.674  -0.456 N13 II9 24 
II9 C14 C21 C 0 1 Y N N 92.101 -7.969  14.753 3.921  1.455  0.236  C14 II9 25 
II9 O16 O1  O 0 1 N N N 91.547 -9.869  13.514 1.745  1.780  1.027  O16 II9 26 
II9 O17 O2  O 0 1 N N N 95.979 -7.944  12.933 2.464  -2.532 -0.031 O17 II9 27 
II9 N18 N5  N 0 1 N N N 97.729 -9.322  12.630 0.897  -4.064 0.336  N18 II9 28 
II9 C29 C22 C 0 1 Y N N 93.240 -15.303 5.365  -7.906 1.376  -0.129 C29 II9 29 
II9 H1  H1  H 0 1 N N N 96.977 -10.704 10.569 -1.393 -3.060 0.185  H1  II9 30 
II9 H2  H2  H 0 1 N N N 92.104 -10.564 11.608 0.064  1.658  -0.287 H2  II9 31 
II9 H3  H3  H 0 1 N N N 90.579 -9.036  15.862 3.716  3.270  1.375  H3  II9 32 
II9 H4  H4  H 0 1 N N N 90.245 -7.158  17.474 6.109  3.887  1.099  H4  II9 33 
II9 H5  H5  H 0 1 N N N 91.689 -13.046 7.338  -5.980 -1.385 0.091  H5  II9 34 
II9 H6  H6  H 0 1 N N N 95.748 -14.455 7.468  -4.818 2.723  -0.310 H6  II9 35 
II9 H7  H7  H 0 1 N N N 91.554 -5.062  17.163 7.585  2.377  -0.207 H7  II9 36 
II9 H8  H8  H 0 1 N N N 99.670 -8.788  13.277 2.446  -5.188 -0.524 H8  II9 37 
II9 H9  H9  H 0 1 N N N 98.627 -7.414  12.778 2.592  -4.917 1.230  H9  II9 38 
II9 H10 H10 H 0 1 N N N 98.332 -8.243  14.344 1.401  -6.082 0.605  H10 II9 39 
II9 H11 H11 H 0 1 N N N 94.137 -4.759  14.377 7.347  -0.678 -0.749 H11 II9 40 
II9 H12 H12 H 0 1 N N N 92.824 -3.734  15.049 6.310  -0.449 -2.177 H12 II9 41 
II9 H13 H13 H 0 1 N N N 94.084 -4.408  16.137 7.689  0.640  -1.895 H13 II9 42 
II9 H14 H14 H 0 1 N N N 91.250 -14.502 5.400  -8.344 -0.707 0.073  H14 II9 43 
II9 H15 H15 H 0 1 N N N 95.273 -15.938 5.550  -7.188 3.381  -0.327 H15 II9 44 
II9 H16 H16 H 0 1 N N N 92.057 -12.451 9.435  -2.803 2.049  -0.282 H16 II9 45 
II9 H18 H18 H 0 1 N N N 94.211 -8.289  13.439 2.664  -0.677 -0.601 H18 II9 46 
II9 H19 H19 H 0 1 N N N 98.079 -10.176 12.244 -0.043 -4.272 0.447  H19 II9 47 
II9 H20 H20 H 0 1 N N N 93.047 -15.938 4.513  -8.945 1.669  -0.137 H20 II9 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
II9 N1  C2  SING Y N 1  
II9 N1  C6  SING Y N 2  
II9 C2  N4  DOUB Y N 3  
II9 C2  C15 SING N N 4  
II9 C3  C5  DOUB Y N 5  
II9 C3  C10 SING Y N 6  
II9 C3  C12 SING N N 7  
II9 N4  C7  SING Y N 8  
II9 C5  N9  SING N N 9  
II9 C5  C11 SING Y N 10 
II9 C6  C11 DOUB Y N 11 
II9 C6  C7  SING Y N 12 
II9 C7  C10 DOUB Y N 13 
II9 C8  N9  SING N N 14 
II9 C8  O16 DOUB N N 15 
II9 C8  C14 SING N N 16 
II9 C12 N18 SING N N 17 
II9 C12 O17 DOUB N N 18 
II9 N13 C19 DOUB Y N 19 
II9 N13 C14 SING Y N 20 
II9 C14 C20 DOUB Y N 21 
II9 C15 C22 DOUB Y N 22 
II9 C15 C23 SING Y N 23 
II9 N18 C25 SING N N 24 
II9 C19 C26 SING N N 25 
II9 C19 C24 SING Y N 26 
II9 C20 C21 SING Y N 27 
II9 C21 C24 DOUB Y N 28 
II9 C22 C27 SING Y N 29 
II9 C23 C28 DOUB Y N 30 
II9 C27 C29 DOUB Y N 31 
II9 C28 C29 SING Y N 32 
II9 C10 H1  SING N N 33 
II9 C11 H2  SING N N 34 
II9 C20 H3  SING N N 35 
II9 C21 H4  SING N N 36 
II9 C22 H5  SING N N 37 
II9 C23 H6  SING N N 38 
II9 C24 H7  SING N N 39 
II9 C25 H8  SING N N 40 
II9 C25 H9  SING N N 41 
II9 C25 H10 SING N N 42 
II9 C26 H11 SING N N 43 
II9 C26 H12 SING N N 44 
II9 C26 H13 SING N N 45 
II9 C27 H14 SING N N 46 
II9 C28 H15 SING N N 47 
II9 N1  H16 SING N N 48 
II9 N9  H18 SING N N 49 
II9 N18 H19 SING N N 50 
II9 C29 H20 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
II9 SMILES           ACDLabs              12.01 "Cc1cccc(n1)C(=O)Nc1cc2[NH]c(nc2cc1C(=O)NC)c1ccccc1"                                                                                                      
II9 InChI            InChI                1.03  "InChI=1S/C22H19N5O2/c1-13-7-6-10-16(24-13)22(29)27-17-12-19-18(11-15(17)21(28)23-2)25-20(26-19)14-8-4-3-5-9-14/h3-12H,1-2H3,(H,23,28)(H,25,26)(H,27,29)" 
II9 InChIKey         InChI                1.03  FEZUIXBPOZHUAQ-UHFFFAOYSA-N                                                                                                                               
II9 SMILES_CANONICAL CACTVS               3.385 "CNC(=O)c1cc2nc([nH]c2cc1NC(=O)c3cccc(C)n3)c4ccccc4"                                                                                                      
II9 SMILES           CACTVS               3.385 "CNC(=O)c1cc2nc([nH]c2cc1NC(=O)c3cccc(C)n3)c4ccccc4"                                                                                                      
II9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)C(=O)Nc2cc3c(cc2C(=O)NC)nc([nH]3)c4ccccc4"                                                                                                    
II9 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)C(=O)Nc2cc3c(cc2C(=O)NC)nc([nH]3)c4ccccc4"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
II9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-methyl-6-[(6-methylpyridine-2-carbonyl)amino]-2-phenyl-1H-benzimidazole-5-carboxamide"        
II9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-6-[(6-methylpyridin-2-yl)carbonylamino]-2-phenyl-1~{H}-benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
II9 "Create component" 2022-01-25 RCSB 
II9 "Initial release"  2022-10-12 RCSB 
# 
