data_OF9
# 
_chem_comp.id                                    OF9 
_chem_comp.name                                  "(2~{R})-1-[4,4-bis(fluoranyl)cyclohexyl]carbonyl-4,4-bis(fluoranyl)-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]pyrrolidine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 F4 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.572 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OF9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8I30 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OF9 C10 C1  C 0 1 N N N N N N 23.055 1.663  0.773  0.035  -1.706 -2.339 C10 OF9 1  
OF9 C13 C2  C 0 1 N N N N N N 23.141 1.068  2.195  0.514  -0.305 -2.803 C13 OF9 2  
OF9 C15 C3  C 0 1 N N N N N N 25.059 2.411  3.234  0.721  1.023  -0.699 C15 OF9 3  
OF9 C17 C4  C 0 1 N N R N N N 26.532 4.435  3.287  2.750  2.088  0.129  C17 OF9 4  
OF9 C20 C5  C 0 1 Y N N N N N 24.079 6.469  3.068  0.463  4.403  -0.060 C20 OF9 5  
OF9 C21 C6  C 0 1 Y N N N N N 22.750 6.730  2.779  -0.792 4.810  0.352  C21 OF9 6  
OF9 C22 C7  C 0 1 Y N N N N N 22.248 6.459  1.516  -1.094 4.860  1.700  C22 OF9 7  
OF9 C24 C8  C 0 1 Y N N N N N 24.396 5.667  0.814  1.110  4.087  2.224  C24 OF9 8  
OF9 C02 C9  C 0 1 N N N N N N 29.711 1.185  -1.933 -6.197 -1.051 0.516  C02 OF9 9  
OF9 C04 C10 C 0 1 N N N N N N 28.651 2.278  -1.809 -5.315 -0.584 1.676  C04 OF9 10 
OF9 C05 C11 C 0 1 N N N N N N 27.846 2.140  -0.523 -4.198 0.313  1.138  C05 OF9 11 
OF9 C06 C12 C 0 1 N N N N N N 27.244 0.746  -0.338 -3.350 -0.473 0.137  C06 OF9 12 
OF9 C07 C13 C 0 1 N N N N N N 26.681 0.687  1.082  -2.250 0.411  -0.393 C07 OF9 13 
OF9 C09 C14 C 0 1 N N N N N N 24.281 1.616  0.191  -1.424 -1.410 -1.912 C09 OF9 14 
OF9 C14 C15 C 0 1 N N R N N N 24.681 1.119  2.500  -0.206 0.648  -1.826 C14 OF9 15 
OF9 C18 C16 C 0 1 N N N N N N 26.358 5.650  2.389  2.780  3.589  0.427  C18 OF9 16 
OF9 C19 C17 C 0 1 Y N N N N N 24.894 5.934  2.085  1.414  4.039  0.876  C19 OF9 17 
OF9 C23 C18 C 0 1 Y N N N N N 23.066 5.930  0.530  -0.142 4.501  2.636  C23 OF9 18 
OF9 C25 C19 C 0 1 N N S N N N 28.004 4.177  3.577  4.140  1.629  -0.317 C25 OF9 19 
OF9 C27 C20 C 0 1 N N N N N N 28.246 3.150  4.687  4.083  0.180  -0.727 C27 OF9 20 
OF9 C29 C21 C 0 1 N N N N N N 29.562 1.106  5.465  3.743  -2.177 -0.211 C29 OF9 21 
OF9 C30 C22 C 0 1 Y N N N N N 28.678 -0.053 5.934  3.409  -3.026 0.989  C30 OF9 22 
OF9 C31 C23 C 0 1 Y N N N N N 27.457 -0.326 5.355  2.096  -3.386 1.226  C31 OF9 23 
OF9 C32 C24 C 0 1 Y N N N N N 26.733 -1.404 5.862  1.799  -4.167 2.333  C32 OF9 24 
OF9 C33 C25 C 0 1 Y N N N N N 27.263 -2.150 6.913  2.839  -4.558 3.162  C33 OF9 25 
OF9 C34 C26 C 0 1 Y N N N N N 28.496 -1.809 7.449  4.127  -4.159 2.861  C34 OF9 26 
OF9 C39 C27 C 0 1 N N N N N N 28.270 -0.364 -0.509 -4.232 -0.940 -1.023 C39 OF9 27 
OF9 C40 C28 C 0 1 N N N N N N 29.109 -0.210 -1.777 -5.348 -1.838 -0.485 C40 OF9 28 
OF9 F01 F1  F 0 1 N N N N N N 30.653 1.391  -0.971 -6.758 0.061  -0.120 F01 OF9 29 
OF9 F03 F2  F 0 1 N N N N N N 30.316 1.264  -3.159 -7.218 -1.872 1.008  F03 OF9 30 
OF9 F11 F3  F 0 1 N N N N N N 22.180 0.922  0.039  0.073  -2.624 -3.395 F11 OF9 31 
OF9 F12 F4  F 0 1 N N N N N N 22.686 2.965  0.908  0.793  -2.161 -1.255 F12 OF9 32 
OF9 N08 N1  N 0 1 N N N N N N 25.311 1.095  1.325  -1.373 -0.072 -1.294 N08 OF9 33 
OF9 N16 N2  N 0 1 N N N N N N 26.089 3.233  2.628  1.782  1.820  -0.937 N16 OF9 34 
OF9 N28 N3  N 0 1 N N N N N N 29.198 2.077  4.420  3.798  -0.768 0.188  N28 OF9 35 
OF9 N35 N4  N 0 1 Y N N N N N 29.155 -0.782 6.945  4.373  -3.420 1.797  N35 OF9 36 
OF9 O26 O1  O 0 1 N N N N N N 28.611 3.690  2.417  4.570  2.421  -1.426 O26 OF9 37 
OF9 O36 O2  O 0 1 N N N N N N 27.672 3.230  5.744  4.292  -0.133 -1.880 O36 OF9 38 
OF9 O37 O3  O 0 1 N N N N N N 24.545 2.737  4.263  0.514  0.608  0.421  O37 OF9 39 
OF9 O38 O4  O 0 1 N N N N N N 27.352 0.327  1.991  -2.154 1.557  -0.007 O38 OF9 40 
OF9 H1  H1  H 0 1 N N N N N N 22.574 1.677  2.914  1.595  -0.215 -2.704 H1  OF9 41 
OF9 H2  H2  H 0 1 N N N N N N 22.767 0.034  2.215  0.203  -0.112 -3.830 H2  OF9 42 
OF9 H3  H3  H 0 1 N N N N N N 25.988 4.589  4.231  2.460  1.545  1.029  H3  OF9 43 
OF9 H4  H4  H 0 1 N N N N N N 24.476 6.681  4.050  0.700  4.365  -1.113 H4  OF9 44 
OF9 H5  H5  H 0 1 N N N N N N 22.104 7.145  3.539  -1.535 5.091  -0.379 H5  OF9 45 
OF9 H6  H6  H 0 1 N N N N N N 21.210 6.662  1.298  -2.075 5.178  2.022  H6  OF9 46 
OF9 H7  H7  H 0 1 N N N N N N 25.043 5.257  0.053  1.853  3.802  2.955  H7  OF9 47 
OF9 H8  H8  H 0 1 N N N N N N 29.148 3.259  -1.814 -5.919 -0.024 2.389  H8  OF9 48 
OF9 H9  H9  H 0 1 N N N N N N 27.966 2.209  -2.667 -4.878 -1.450 2.172  H9  OF9 49 
OF9 H10 H10 H 0 1 N N N N N N 28.509 2.351  0.329  -4.636 1.180  0.642  H10 OF9 50 
OF9 H11 H11 H 0 1 N N N N N N 27.028 2.875  -0.542 -3.570 0.646  1.964  H11 OF9 51 
OF9 H12 H12 H 0 1 N N N N N N 26.427 0.604  -1.060 -2.912 -1.339 0.633  H12 OF9 52 
OF9 H13 H13 H 0 1 N N N N N N 24.270 0.920  -0.661 -2.080 -1.401 -2.783 H13 OF9 53 
OF9 H14 H14 H 0 1 N N N N N N 24.575 2.617  -0.157 -1.765 -2.150 -1.187 H14 OF9 54 
OF9 H15 H15 H 0 1 N N N N N N 24.944 0.256  3.130  -0.530 1.545  -2.354 H15 OF9 55 
OF9 H16 H16 H 0 1 N N N N N N 26.888 5.470  1.442  3.506  3.789  1.215  H16 OF9 56 
OF9 H17 H17 H 0 1 N N N N N N 26.792 6.527  2.891  3.063  4.132  -0.475 H17 OF9 57 
OF9 H18 H18 H 0 1 N N N N N N 22.669 5.724  -0.453 -0.379 4.539  3.689  H18 OF9 58 
OF9 H19 H19 H 0 1 N N N N N N 28.470 5.127  3.878  4.843  1.746  0.507  H19 OF9 59 
OF9 H20 H20 H 0 1 N N N N N N 30.497 0.640  5.120  4.710  -2.480 -0.612 H20 OF9 60 
OF9 H21 H21 H 0 1 N N N N N N 29.762 1.705  6.365  2.976  -2.309 -0.974 H21 OF9 61 
OF9 H22 H22 H 0 1 N N N N N N 27.076 0.272  4.540  1.311  -3.063 0.559  H22 OF9 62 
OF9 H23 H23 H 0 1 N N N N N N 25.770 -1.659 5.444  0.782  -4.464 2.544  H23 OF9 63 
OF9 H24 H24 H 0 1 N N N N N N 26.715 -2.992 7.309  2.645  -5.166 4.033  H24 OF9 64 
OF9 H25 H25 H 0 1 N N N N N N 28.912 -2.377 8.268  4.943  -4.459 3.502  H25 OF9 65 
OF9 H26 H26 H 0 1 N N N N N N 27.741 -1.327 -0.554 -4.669 -0.074 -1.519 H26 OF9 66 
OF9 H27 H27 H 0 1 N N N N N N 28.944 -0.356 0.360  -3.627 -1.501 -1.736 H27 OF9 67 
OF9 H28 H28 H 0 1 N N N N N N 28.468 -0.414 -2.647 -4.911 -2.704 0.011  H28 OF9 68 
OF9 H29 H29 H 0 1 N N N N N N 29.928 -0.943 -1.745 -5.976 -2.171 -1.311 H29 OF9 69 
OF9 H30 H30 H 0 1 N N N N N N 26.492 2.965  1.753  1.904  2.217  -1.814 H30 OF9 70 
OF9 H31 H31 H 0 1 N N N N N N 29.610 2.000  3.512  3.631  -0.518 1.110  H31 OF9 71 
OF9 H32 H32 H 0 1 N N N N N N 29.531 3.525  2.586  3.990  2.366  -2.197 H32 OF9 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OF9 F03 C02 SING N N 1  
OF9 C02 C04 SING N N 2  
OF9 C02 C40 SING N N 3  
OF9 C02 F01 SING N N 4  
OF9 C04 C05 SING N N 5  
OF9 C40 C39 SING N N 6  
OF9 C05 C06 SING N N 7  
OF9 C39 C06 SING N N 8  
OF9 C06 C07 SING N N 9  
OF9 F11 C10 SING N N 10 
OF9 C09 C10 SING N N 11 
OF9 C09 N08 SING N N 12 
OF9 C23 C24 DOUB Y N 13 
OF9 C23 C22 SING Y N 14 
OF9 C10 F12 SING N N 15 
OF9 C10 C13 SING N N 16 
OF9 C24 C19 SING Y N 17 
OF9 C07 N08 SING N N 18 
OF9 C07 O38 DOUB N N 19 
OF9 N08 C14 SING N N 20 
OF9 C22 C21 DOUB Y N 21 
OF9 C19 C18 SING N N 22 
OF9 C19 C20 DOUB Y N 23 
OF9 C13 C14 SING N N 24 
OF9 C18 C17 SING N N 25 
OF9 O26 C25 SING N N 26 
OF9 C14 C15 SING N N 27 
OF9 N16 C15 SING N N 28 
OF9 N16 C17 SING N N 29 
OF9 C21 C20 SING Y N 30 
OF9 C15 O37 DOUB N N 31 
OF9 C17 C25 SING N N 32 
OF9 C25 C27 SING N N 33 
OF9 N28 C27 SING N N 34 
OF9 N28 C29 SING N N 35 
OF9 C27 O36 DOUB N N 36 
OF9 C31 C32 DOUB Y N 37 
OF9 C31 C30 SING Y N 38 
OF9 C29 C30 SING N N 39 
OF9 C32 C33 SING Y N 40 
OF9 C30 N35 DOUB Y N 41 
OF9 C33 C34 DOUB Y N 42 
OF9 N35 C34 SING Y N 43 
OF9 C13 H1  SING N N 44 
OF9 C13 H2  SING N N 45 
OF9 C17 H3  SING N N 46 
OF9 C20 H4  SING N N 47 
OF9 C21 H5  SING N N 48 
OF9 C22 H6  SING N N 49 
OF9 C24 H7  SING N N 50 
OF9 C04 H8  SING N N 51 
OF9 C04 H9  SING N N 52 
OF9 C05 H10 SING N N 53 
OF9 C05 H11 SING N N 54 
OF9 C06 H12 SING N N 55 
OF9 C09 H13 SING N N 56 
OF9 C09 H14 SING N N 57 
OF9 C14 H15 SING N N 58 
OF9 C18 H16 SING N N 59 
OF9 C18 H17 SING N N 60 
OF9 C23 H18 SING N N 61 
OF9 C25 H19 SING N N 62 
OF9 C29 H20 SING N N 63 
OF9 C29 H21 SING N N 64 
OF9 C31 H22 SING N N 65 
OF9 C32 H23 SING N N 66 
OF9 C33 H24 SING N N 67 
OF9 C34 H25 SING N N 68 
OF9 C39 H26 SING N N 69 
OF9 C39 H27 SING N N 70 
OF9 C40 H28 SING N N 71 
OF9 C40 H29 SING N N 72 
OF9 N16 H30 SING N N 73 
OF9 N28 H31 SING N N 74 
OF9 O26 H32 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OF9 InChI            InChI                1.06  "InChI=1S/C28H32F4N4O4/c29-27(30)11-9-19(10-12-27)26(40)36-17-28(31,32)15-22(36)24(38)35-21(14-18-6-2-1-3-7-18)23(37)25(39)34-16-20-8-4-5-13-33-20/h1-8,13,19,21-23,37H,9-12,14-17H2,(H,34,39)(H,35,38)/t21-,22-,23+/m1/s1" 
OF9 InChIKey         InChI                1.06  QXLYQUMSFSBBGE-ZLNRFVROSA-N                                                                                                                                                                                                 
OF9 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]([C@@H](Cc1ccccc1)NC(=O)[C@H]2CC(F)(F)CN2C(=O)C3CCC(F)(F)CC3)C(=O)NCc4ccccn4"                                                                                                                                       
OF9 SMILES           CACTVS               3.385 "O[CH]([CH](Cc1ccccc1)NC(=O)[CH]2CC(F)(F)CN2C(=O)C3CCC(F)(F)CC3)C(=O)NCc4ccccn4"                                                                                                                                            
OF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@H]([C@@H](C(=O)NCc2ccccn2)O)NC(=O)[C@H]3CC(CN3C(=O)C4CCC(CC4)(F)F)(F)F"                                                                                                                                      
OF9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(C(=O)NCc2ccccn2)O)NC(=O)C3CC(CN3C(=O)C4CCC(CC4)(F)F)(F)F"                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           OF9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-1-[4,4-bis(fluoranyl)cyclohexyl]carbonyl-4,4-bis(fluoranyl)-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OF9 "Create component" 2023-01-31 PDBJ 
OF9 "Initial release"  2023-08-16 RCSB 
OF9 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OF9 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
