data_PD9
#

_chem_comp.id                                   PD9
_chem_comp.name                                 "(~{E})-2-cyano-~{N},~{N}-diethyl-3-[3-nitro-4,5-bis(oxidanyl)phenyl]prop-2-enamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H15 N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-10-30
_chem_comp.pdbx_modified_date                   2019-07-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       305.286
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PD9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EH3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PD9  C4   C1   C   0  1  Y  N  N  28.813  7.329  -27.599  -3.167   0.616  -0.029  C4   PD9   1  
PD9  C5   C2   C   0  1  Y  N  N  29.714  7.851  -28.539  -1.925   1.193   0.101  C5   PD9   2  
PD9  C6   C3   C   0  1  Y  N  N  27.460  7.231  -27.950  -3.314  -0.761   0.088  C6   PD9   3  
PD9  C10  C4   C   0  1  Y  N  N  27.918  8.154  -30.138  -0.951  -0.999   0.459  C10  PD9   4  
PD9  C11  C5   C   0  1  Y  N  N  29.273  8.262  -29.806  -0.802   0.391   0.347  C11  PD9   5  
PD9  C12  C6   C   0  1  N  N  N  30.213  8.767  -30.710   0.523   1.001   0.480  C12  PD9   6  
PD9  C14  C7   C   0  1  N  N  N  30.688  6.476  -31.582   1.522  -0.999  -0.482  C14  PD9   7  
PD9  N15  N1   N   0  1  N  N  N  30.422  5.428  -31.533   1.421  -2.014  -0.981  N15  PD9   8  
PD9  C16  C8   C   0  1  N  N  N  32.087  8.397  -32.604   2.984   0.826   0.442  C16  PD9   9  
PD9  O17  O1   O   0  1  N  N  N  32.265  9.611  -32.541   3.094   1.846   1.097  O17  PD9  10  
PD9  C19  C9   C   0  1  N  N  N  32.720  6.139  -33.647   5.412   0.762   0.243  C19  PD9  11  
PD9  C20  C10  C   0  1  N  N  N  33.851  8.244  -34.354   3.955  -1.055  -0.765  C20  PD9  12  
PD9  C21  C11  C   0  1  N  N  N  31.487  5.747  -34.482   5.793   1.707  -0.898  C21  PD9  13  
PD9  O21  O2   O   0  1  N  N  N  28.523  5.824  -25.701  -5.453   0.955  -0.403  O21  PD9  14  
PD9  N20  N2   N   1  1  N  N  N  29.204  6.931  -26.374  -4.352   1.464  -0.288  N20  PD9  15  
PD9  O22  O3   O  -1  1  N  N  N  30.291  7.632  -25.728  -4.227   2.672  -0.386  O22  PD9  16  
PD9  O7   O4   O   0  1  N  N  N  26.554  6.726  -27.066  -4.543  -1.324  -0.036  O7   PD9  17  
PD9  C8   C12  C   0  1  Y  N  N  27.014  7.638  -29.208  -2.201  -1.568   0.333  C8   PD9  18  
PD9  O9   O5   O   0  1  N  N  N  25.687  7.511  -29.477  -2.350  -2.915   0.441  O9   PD9  19  
PD9  C13  C13  C   0  1  N  N  N  31.004  7.813  -31.637   1.650   0.280   0.148  C13  PD9  20  
PD9  N18  N3   N   0  1  N  N  N  32.803  7.618  -33.497   4.085   0.196  -0.013  N18  PD9  21  
PD9  C22  C14  C   0  1  N  N  N  33.879  7.736  -35.804   3.793  -2.222   0.211  C22  PD9  22  
PD9  H1   H1   H   0  1  N  N  N  30.760  7.938  -28.284  -1.815   2.264   0.013  H1   PD9  23  
PD9  H2   H2   H   0  1  N  N  N  27.572  8.469  -31.111  -0.089  -1.623   0.648  H2   PD9  24  
PD9  H3   H3   H   0  1  N  N  N  30.388  9.831  -30.762   0.616   2.016   0.837  H3   PD9  25  
PD9  H4   H4   H   0  1  N  N  N  32.643  5.678  -32.651   6.144  -0.043   0.308  H4   PD9  26  
PD9  H5   H5   H   0  1  N  N  N  33.628  5.775  -34.150   5.396   1.314   1.183  H5   PD9  27  
PD9  H6   H6   H   0  1  N  N  N  34.832  8.040  -33.900   3.080  -1.000  -1.413  H6   PD9  28  
PD9  H7   H7   H   0  1  N  N  N  33.674  9.330  -34.374   4.847  -1.209  -1.371  H7   PD9  29  
PD9  H8   H8   H   0  1  N  N  N  31.444  4.652  -34.581   5.061   2.512  -0.962  H8   PD9  30  
PD9  H9   H9   H   0  1  N  N  N  30.576  6.106  -33.981   6.780   2.128  -0.707  H9   PD9  31  
PD9  H10  H10  H   0  1  N  N  N  31.560  6.203  -35.480   5.809   1.154  -1.837  H10  PD9  32  
PD9  H11  H11  H   0  1  N  N  N  27.012  6.281  -26.362  -4.771  -1.574  -0.941  H11  PD9  33  
PD9  H12  H12  H   0  1  N  N  N  25.244  7.143  -28.722  -2.519  -3.221   1.343  H12  PD9  34  
PD9  H13  H13  H   0  1  N  N  N  34.678  8.250  -36.358   3.697  -3.153  -0.348  H13  PD9  35  
PD9  H14  H14  H   0  1  N  N  N  34.068  6.652  -35.809   4.668  -2.277   0.859  H14  PD9  36  
PD9  H15  H15  H   0  1  N  N  N  32.910  7.942  -36.283   2.901  -2.068   0.817  H15  PD9  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PD9  C22  C20  SING  N  N   1  
PD9  C21  C19  SING  N  N   2  
PD9  C20  N18  SING  N  N   3  
PD9  C19  N18  SING  N  N   4  
PD9  N18  C16  SING  N  N   5  
PD9  C16  O17  DOUB  N  N   6  
PD9  C16  C13  SING  N  N   7  
PD9  C13  C14  SING  N  N   8  
PD9  C13  C12  DOUB  N  E   9  
PD9  C14  N15  TRIP  N  N  10  
PD9  C12  C11  SING  N  N  11  
PD9  C10  C11  DOUB  Y  N  12  
PD9  C10  C8   SING  Y  N  13  
PD9  C11  C5   SING  Y  N  14  
PD9  O9   C8   SING  N  N  15  
PD9  C8   C6   DOUB  Y  N  16  
PD9  C5   C4   DOUB  Y  N  17  
PD9  C6   C4   SING  Y  N  18  
PD9  C6   O7   SING  N  N  19  
PD9  C4   N20  SING  N  N  20  
PD9  N20  O22  SING  N  N  21  
PD9  N20  O21  DOUB  N  N  22  
PD9  C5   H1   SING  N  N  23  
PD9  C10  H2   SING  N  N  24  
PD9  C12  H3   SING  N  N  25  
PD9  C19  H4   SING  N  N  26  
PD9  C19  H5   SING  N  N  27  
PD9  C20  H6   SING  N  N  28  
PD9  C20  H7   SING  N  N  29  
PD9  C21  H8   SING  N  N  30  
PD9  C21  H9   SING  N  N  31  
PD9  C21  H10  SING  N  N  32  
PD9  O7   H11  SING  N  N  33  
PD9  O9   H12  SING  N  N  34  
PD9  C22  H13  SING  N  N  35  
PD9  C22  H14  SING  N  N  36  
PD9  C22  H15  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PD9  InChI             InChI                 1.03   "InChI=1S/C14H15N3O5/c1-3-16(4-2)14(20)10(8-15)5-9-6-11(17(21)22)13(19)12(18)7-9/h5-7,18-19H,3-4H2,1-2H3/b10-5+"  
PD9  InChIKey          InChI                 1.03   JRURYQJSLYLRLN-BJMVGYQFSA-N  
PD9  SMILES_CANONICAL  CACTVS                3.385  "CCN(CC)C(=O)C(=C/c1cc(O)c(O)c(c1)[N+]([O-])=O)/C#N"  
PD9  SMILES            CACTVS                3.385  "CCN(CC)C(=O)C(=Cc1cc(O)c(O)c(c1)[N+]([O-])=O)C#N"  
PD9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CCN(CC)C(=O)/C(=C/c1cc(c(c(c1)O)O)[N+](=O)[O-])/C#N"  
PD9  SMILES            "OpenEye OEToolkits"  2.0.4  "CCN(CC)C(=O)C(=Cc1cc(c(c(c1)O)O)[N+](=O)[O-])C#N"  
#
_pdbx_chem_comp_identifier.comp_id          PD9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "(~{E})-2-cyano-~{N},~{N}-diethyl-3-[3-nitro-4,5-bis(oxidanyl)phenyl]prop-2-enamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PD9  "Create component"  2015-10-30  PDBJ  
PD9  "Initial release"   2019-07-10  RCSB  
##
