data_VB9
# 
_chem_comp.id                                    VB9 
_chem_comp.name                                  "3-[2-(dimethylamino)ethyl]-2-sulfanylidene-2,3-dihydrothieno[3,2-d]pyrimidin-4(1H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 N3 O S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-29 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        255.360 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VB9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FLE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VB9 N1  N1  N 0 1 N N N 46.148 31.567 27.476 -0.329 0.088  0.440  N1  VB9 1  
VB9 C7  C1  C 0 1 Y N N 49.946 33.080 27.313 3.588  0.991  -0.555 C7  VB9 2  
VB9 C8  C2  C 0 1 Y N N 50.028 33.826 26.248 4.348  -0.099 -0.476 C8  VB9 3  
VB9 N2  N2  N 0 1 N N N 48.331 31.702 28.447 1.195  1.738  -0.233 N2  VB9 4  
VB9 C9  C3  C 0 1 N N N 47.128 31.254 28.425 -0.047 1.358  0.104  C9  VB9 5  
VB9 C1  C4  C 0 1 N N N 43.378 27.784 26.394 -4.524 -1.716 -1.225 C1  VB9 6  
VB9 C5  C5  C 0 1 Y N N 47.772 32.913 26.482 1.964  -0.497 0.108  C5  VB9 7  
VB9 C6  C6  C 0 1 Y N N 48.635 32.530 27.463 2.246  0.811  -0.243 C6  VB9 8  
VB9 C4  C7  C 0 1 N N N 46.401 32.470 26.413 0.635  -0.851 0.456  C4  VB9 9  
VB9 C3  C8  C 0 1 N N N 44.862 30.956 27.547 -1.702 -0.278 0.800  C3  VB9 10 
VB9 C2  C9  C 0 1 N N N 44.762 29.795 26.545 -2.461 -0.709 -0.457 C2  VB9 11 
VB9 S1  S1  S 0 1 N N N 46.711 30.275 29.670 -1.304 2.520  0.104  S1  VB9 12 
VB9 N   N3  N 0 1 N N N 43.340 29.282 26.540 -3.837 -1.076 -0.096 N   VB9 13 
VB9 C   C10 C 0 1 N N N 42.528 29.849 25.394 -4.586 0.095  0.381  C   VB9 14 
VB9 S   S2  S 0 1 Y N N 48.593 33.865 25.460 3.437  -1.453 0.016  S   VB9 15 
VB9 O   O1  O 0 1 N N N 45.449 32.803 25.636 0.369  -1.998 0.767  O   VB9 16 
VB9 H1  H1  H 0 1 N N N 50.764 32.900 27.995 3.987  1.950  -0.850 H1  VB9 17 
VB9 H2  H2  H 0 1 N N N 50.919 34.347 25.929 5.407  -0.121 -0.687 H2  VB9 18 
VB9 H3  H3  H 0 1 N N N 48.988 31.444 29.155 1.367  2.663  -0.471 H3  VB9 19 
VB9 H4  H4  H 0 1 N N N 43.964 27.350 27.217 -3.986 -2.619 -1.513 H4  VB9 20 
VB9 H5  H5  H 0 1 N N N 42.353 27.387 26.424 -5.541 -1.978 -0.931 H5  VB9 21 
VB9 H6  H6  H 0 1 N N N 43.845 27.521 25.433 -4.556 -1.028 -2.069 H6  VB9 22 
VB9 H7  H7  H 0 1 N N N 44.092 31.705 27.311 -1.683 -1.102 1.513  H7  VB9 23 
VB9 H8  H8  H 0 1 N N N 44.700 30.571 28.565 -2.201 0.581  1.249  H8  VB9 24 
VB9 H9  H9  H 0 1 N N N 45.446 28.987 26.844 -2.480 0.115  -1.170 H9  VB9 25 
VB9 H10 H10 H 0 1 N N N 45.031 30.150 25.539 -1.962 -1.567 -0.906 H10 VB9 26 
VB9 H12 H12 H 0 1 N N N 42.487 30.945 25.480 -5.578 -0.217 0.707  H12 VB9 27 
VB9 H13 H13 H 0 1 N N N 43.000 29.574 24.439 -4.055 0.550  1.217  H13 VB9 28 
VB9 H14 H14 H 0 1 N N N 41.508 29.440 25.430 -4.680 0.820  -0.428 H14 VB9 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VB9 C  N   SING N N 1  
VB9 S  C8  SING Y N 2  
VB9 S  C5  SING Y N 3  
VB9 O  C4  DOUB N N 4  
VB9 C8 C7  DOUB Y N 5  
VB9 C1 N   SING N N 6  
VB9 C4 C5  SING N N 7  
VB9 C4 N1  SING N N 8  
VB9 C5 C6  DOUB Y N 9  
VB9 N  C2  SING N N 10 
VB9 C2 C3  SING N N 11 
VB9 C7 C6  SING Y N 12 
VB9 C6 N2  SING N N 13 
VB9 N1 C3  SING N N 14 
VB9 N1 C9  SING N N 15 
VB9 C9 N2  SING N N 16 
VB9 C9 S1  DOUB N N 17 
VB9 C7 H1  SING N N 18 
VB9 C8 H2  SING N N 19 
VB9 N2 H3  SING N N 20 
VB9 C1 H4  SING N N 21 
VB9 C1 H5  SING N N 22 
VB9 C1 H6  SING N N 23 
VB9 C3 H7  SING N N 24 
VB9 C3 H8  SING N N 25 
VB9 C2 H9  SING N N 26 
VB9 C2 H10 SING N N 27 
VB9 C  H12 SING N N 28 
VB9 C  H13 SING N N 29 
VB9 C  H14 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VB9 SMILES           ACDLabs              12.01 "CN(C)CCN1C(=O)c2sccc2NC1=S"                                                                    
VB9 InChI            InChI                1.06  "InChI=1S/C10H13N3OS2/c1-12(2)4-5-13-9(14)8-7(3-6-16-8)11-10(13)15/h3,6H,4-5H2,1-2H3,(H,11,15)" 
VB9 InChIKey         InChI                1.06  PIFSYBNBNGDCBU-UHFFFAOYSA-N                                                                     
VB9 SMILES_CANONICAL CACTVS               3.385 "CN(C)CCN1C(=S)Nc2ccsc2C1=O"                                                                    
VB9 SMILES           CACTVS               3.385 "CN(C)CCN1C(=S)Nc2ccsc2C1=O"                                                                    
VB9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCN1C(=O)c2c(ccs2)NC1=S"                                                                  
VB9 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)CCN1C(=O)c2c(ccs2)NC1=S"                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VB9 "SYSTEMATIC NAME" ACDLabs              12.01 "3-[2-(dimethylamino)ethyl]-2-sulfanylidene-2,3-dihydrothieno[3,2-d]pyrimidin-4(1H)-one" 
VB9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-(dimethylamino)ethyl]-2-sulfanylidene-1~{H}-thieno[3,2-d]pyrimidin-4-one"          
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VB9 "Create component" 2022-08-29 RCSB 
VB9 "Initial release"  2022-11-02 RCSB 
# 
