data_YA9
# 
_chem_comp.id                                    YA9 
_chem_comp.name                                  "4-azanyl-3-[(~{E})-[4-[4-[(~{E})-(1-azanyl-4-sulfo-naphthalen-2-yl)diazenyl]phenyl]phenyl]diazenyl]naphthalene-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H24 N6 O6 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-28 
_chem_comp.pdbx_modified_date                    2024-12-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        652.700 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YA9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8X7M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YA9 C01 C1  C 0 1 Y N N N N N 101.623 131.482 108.147 11.263  2.876  0.035  C01 YA9 1  
YA9 C02 C2  C 0 1 Y N N N N N 102.332 132.480 107.486 11.870  1.623  0.009  C02 YA9 2  
YA9 C03 C3  C 0 1 Y N N N N N 101.751 133.725 107.285 11.125  0.483  -0.012 C03 YA9 3  
YA9 C04 C4  C 0 1 Y N N N N N 100.447 133.977 107.750 9.723   0.567  -0.008 C04 YA9 4  
YA9 C05 C5  C 0 1 Y N N N N N 99.748  132.991 108.403 9.106   1.842  0.019  C05 YA9 5  
YA9 C06 C6  C 0 1 Y N N N N N 100.336 131.729 108.606 9.906   2.996  0.040  C06 YA9 6  
YA9 C07 C7  C 0 1 Y N N N N N 98.466  133.263 108.921 7.698   1.932  0.024  C07 YA9 7  
YA9 C08 C8  C 0 1 Y N N N N N 97.910  134.525 108.772 6.940   0.758  0.002  C08 YA9 8  
YA9 C09 C9  C 0 1 Y N N N N N 98.619  135.524 108.110 7.575   -0.498 -0.024 C09 YA9 9  
YA9 C10 C10 C 0 1 Y N N N N N 99.882  135.259 107.599 8.927   -0.595 -0.030 C10 YA9 10 
YA9 S11 S1  S 0 1 N N N N N N 100.842 136.587 106.814 9.693   -2.182 -0.063 S11 YA9 11 
YA9 O12 O1  O 0 1 N N N N N N 102.119 136.862 107.573 8.756   -3.149 0.646  O12 YA9 12 
YA9 O13 O2  O 0 1 N N N N N N 100.138 137.917 106.936 9.727   -2.583 -1.426 O13 YA9 13 
YA9 O14 O3  O 0 1 N N N N N N 101.126 136.246 105.371 10.856  -2.083 0.748  O14 YA9 14 
YA9 N15 N1  N 0 1 N N N N N N 96.575  134.796 109.288 5.581   0.830  0.007  N15 YA9 15 
YA9 N16 N2  N 0 1 N N N N N N 96.074  135.895 109.134 4.878   -0.252 -0.013 N16 YA9 16 
YA9 C17 C11 C 0 1 Y N N N N N 94.741  136.169 109.653 3.515   -0.180 -0.008 C17 YA9 17 
YA9 C18 C12 C 0 1 Y N N N N N 94.171  137.422 109.479 2.879   1.066  0.013  C18 YA9 18 
YA9 C19 C13 C 0 1 Y N N N N N 92.901  137.680 109.969 1.510   1.137  0.017  C19 YA9 19 
YA9 C20 C14 C 0 1 Y N N N N N 92.200  136.687 110.636 0.750   -0.034 0.001  C20 YA9 20 
YA9 C21 C15 C 0 1 Y N N N N N 92.769  135.434 110.811 1.383   -1.279 -0.019 C21 YA9 21 
YA9 C22 C16 C 0 1 Y N N N N N 94.040  135.176 110.321 2.751   -1.352 -0.030 C22 YA9 22 
YA9 C23 C17 C 0 1 Y N N N N N 90.924  136.945 111.128 -0.729  0.044  0.007  C23 YA9 23 
YA9 C24 C18 C 0 1 Y N N N N N 90.357  138.201 110.982 -1.362  1.289  0.021  C24 YA9 24 
YA9 C25 C19 C 0 1 Y N N N N N 89.087  138.449 111.479 -2.731  1.362  0.026  C25 YA9 25 
YA9 C26 C20 C 0 1 Y N N N N N 88.384  137.442 112.120 -3.494  0.190  0.016  C26 YA9 26 
YA9 C27 C21 C 0 1 Y N N N N N 88.951  136.185 112.265 -2.859  -1.056 0.001  C27 YA9 27 
YA9 C28 C22 C 0 1 Y N N N N N 90.222  135.937 111.769 -1.489  -1.127 -0.009 C28 YA9 28 
YA9 N29 N3  N 0 1 N N N N N N 87.063  137.713 112.674 -4.857  0.262  0.022  N29 YA9 29 
YA9 N30 N4  N 0 1 N N N N N N 86.546  138.808 112.513 -5.560  -0.820 0.012  N30 YA9 30 
YA9 C31 C23 C 0 1 Y N N N N N 85.224  139.079 113.068 -6.919  -0.748 0.018  C31 YA9 31 
YA9 C32 C24 C 0 1 Y N N N N N 84.659  140.343 112.932 -7.555  0.508  0.027  C32 YA9 32 
YA9 C33 C25 C 0 1 Y N N N N N 83.393  140.596 113.446 -8.907  0.605  0.033  C33 YA9 33 
YA9 C34 C26 C 0 1 Y N N N N N 82.681  139.573 114.101 -9.703  -0.557 0.030  C34 YA9 34 
YA9 C35 C27 C 0 1 Y N N N N N 83.240  138.325 114.234 -9.085  -1.832 0.019  C35 YA9 35 
YA9 C36 C28 C 0 1 Y N N N N N 84.524  138.069 113.715 -7.677  -1.922 0.007  C36 YA9 36 
YA9 N37 N5  N 0 1 N N N N N N 85.123  136.757 113.875 -7.054  -3.159 -0.008 N37 YA9 37 
YA9 C38 C29 C 0 1 Y N N N N N 82.523  137.301 114.883 -9.885  -2.986 0.016  C38 YA9 38 
YA9 C39 C30 C 0 1 Y N N N N N 81.255  137.551 115.388 -11.242 -2.867 0.023  C39 YA9 39 
YA9 C40 C31 C 0 1 Y N N N N N 80.691  138.816 115.254 -11.850 -1.613 0.033  C40 YA9 40 
YA9 C41 C32 C 0 1 Y N N N N N 81.395  139.828 114.613 -11.104 -0.473 0.036  C41 YA9 41 
YA9 S42 S2  S 0 1 N N N N N N 82.662  142.251 113.282 -9.672  2.192  0.046  S42 YA9 42 
YA9 O43 O4  O 0 1 N N N N N N 81.379  142.207 112.487 -10.889 2.045  0.764  O43 YA9 43 
YA9 O44 O5  O 0 1 N N N N N N 83.515  143.144 112.414 -8.662  3.122  0.411  O44 YA9 44 
YA9 O45 O6  O 0 1 N N N N N N 82.441  142.862 114.645 -10.058 2.518  -1.390 O45 YA9 45 
YA9 N46 N6  N 0 1 N N N N N N 97.726  132.219 109.609 7.075   3.168  0.050  N46 YA9 46 
YA9 H1  H1  H 0 1 N N N N N N 102.074 130.513 108.303 11.876  3.765  0.056  H1  YA9 47 
YA9 H2  H2  H 0 1 N N N N N N 103.333 132.287 107.130 12.948  1.554  0.006  H2  YA9 48 
YA9 H3  H3  H 0 1 N N N N N N 102.300 134.500 106.772 11.610  -0.482 -0.032 H3  YA9 49 
YA9 H4  H4  H 0 1 N N N N N N 99.787  130.953 109.118 9.448   3.973  0.064  H4  YA9 50 
YA9 H5  H5  H 0 1 N N N N N N 98.186  136.506 107.994 6.977   -1.397 -0.040 H5  YA9 51 
YA9 H6  H6  H 0 1 N N N N N N 94.718  138.196 108.961 3.467   1.972  0.026  H6  YA9 52 
YA9 H7  H7  H 0 1 N N N N N N 92.457  138.655 109.831 1.019   2.099  0.033  H7  YA9 53 
YA9 H8  H8  H 0 1 N N N N N N 92.222  134.660 111.329 0.793   -2.184 -0.030 H8  YA9 54 
YA9 H9  H9  H 0 1 N N N N N N 94.484  134.201 110.459 3.240   -2.315 -0.050 H9  YA9 55 
YA9 H10 H10 H 0 1 N N N N N N 90.904  138.986 110.481 -0.772  2.194  0.030  H10 YA9 56 
YA9 H11 H11 H 0 1 N N N N N N 88.645  139.428 111.366 -3.220  2.325  0.038  H11 YA9 57 
YA9 H12 H12 H 0 1 N N N N N N 88.403  135.399 112.764 -3.446  -1.963 -0.006 H12 YA9 58 
YA9 H13 H13 H 0 1 N N N N N N 90.665  134.958 111.882 -0.999  -2.089 -0.025 H13 YA9 59 
YA9 H14 H14 H 0 1 N N N N N N 85.204  141.127 112.427 -6.956  1.408  0.031  H14 YA9 60 
YA9 H15 H15 H 0 1 N N N N N N 84.487  136.156 114.359 -6.086  -3.214 -0.012 H15 YA9 61 
YA9 H16 H16 H 0 1 N N N N N N 85.326  136.371 112.975 -7.586  -3.970 -0.015 H16 YA9 62 
YA9 H17 H17 H 0 1 N N N N N N 82.961  136.319 114.988 -9.427  -3.964 0.008  H17 YA9 63 
YA9 H18 H18 H 0 1 N N N N N N 80.706  136.764 115.885 -11.855 -3.756 0.021  H18 YA9 64 
YA9 H19 H19 H 0 1 N N N N N N 79.705  139.011 115.649 -12.927 -1.545 0.038  H19 YA9 65 
YA9 H20 H20 H 0 1 N N N N N N 80.956  140.809 114.508 -11.590 0.492  0.045  H20 YA9 66 
YA9 H21 H21 H 0 1 N N N N N N 96.843  132.579 109.910 7.607   3.980  0.065  H21 YA9 67 
YA9 H22 H22 H 0 1 N N N N N N 97.578  131.450 108.987 6.106   3.224  0.053  H22 YA9 68 
YA9 H23 H23 H 0 1 N N N N N N 102.111 137.756 107.895 9.084   -4.058 0.684  H23 YA9 69 
YA9 H24 H24 H 0 1 N N N N N N 82.887  143.700 114.693 -10.490 3.377  -1.496 H24 YA9 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YA9 O14 S11 DOUB N N 1  
YA9 S11 O13 DOUB N N 2  
YA9 S11 O12 SING N N 3  
YA9 S11 C10 SING N N 4  
YA9 C03 C02 SING Y N 5  
YA9 C03 C04 DOUB Y N 6  
YA9 C02 C01 DOUB Y N 7  
YA9 C10 C04 SING Y N 8  
YA9 C10 C09 DOUB Y N 9  
YA9 C04 C05 SING Y N 10 
YA9 C09 C08 SING Y N 11 
YA9 C01 C06 SING Y N 12 
YA9 C05 C06 DOUB Y N 13 
YA9 C05 C07 SING Y N 14 
YA9 C08 C07 DOUB Y N 15 
YA9 C08 N15 SING N N 16 
YA9 C07 N46 SING N N 17 
YA9 N16 N15 DOUB N N 18 
YA9 N16 C17 SING N N 19 
YA9 C18 C17 DOUB Y N 20 
YA9 C18 C19 SING Y N 21 
YA9 C17 C22 SING Y N 22 
YA9 C19 C20 DOUB Y N 23 
YA9 C22 C21 DOUB Y N 24 
YA9 C20 C21 SING Y N 25 
YA9 C20 C23 SING N N 26 
YA9 C24 C23 DOUB Y N 27 
YA9 C24 C25 SING Y N 28 
YA9 C23 C28 SING Y N 29 
YA9 C25 C26 DOUB Y N 30 
YA9 C28 C27 DOUB Y N 31 
YA9 C26 C27 SING Y N 32 
YA9 C26 N29 SING N N 33 
YA9 O44 S42 DOUB N N 34 
YA9 O43 S42 DOUB N N 35 
YA9 N30 N29 DOUB N N 36 
YA9 N30 C31 SING N N 37 
YA9 C32 C31 DOUB Y N 38 
YA9 C32 C33 SING Y N 39 
YA9 C31 C36 SING Y N 40 
YA9 S42 C33 SING N N 41 
YA9 S42 O45 SING N N 42 
YA9 C33 C34 DOUB Y N 43 
YA9 C36 N37 SING N N 44 
YA9 C36 C35 DOUB Y N 45 
YA9 C34 C35 SING Y N 46 
YA9 C34 C41 SING Y N 47 
YA9 C35 C38 SING Y N 48 
YA9 C41 C40 DOUB Y N 49 
YA9 C38 C39 DOUB Y N 50 
YA9 C40 C39 SING Y N 51 
YA9 C01 H1  SING N N 52 
YA9 C02 H2  SING N N 53 
YA9 C03 H3  SING N N 54 
YA9 C06 H4  SING N N 55 
YA9 C09 H5  SING N N 56 
YA9 C18 H6  SING N N 57 
YA9 C19 H7  SING N N 58 
YA9 C21 H8  SING N N 59 
YA9 C22 H9  SING N N 60 
YA9 C24 H10 SING N N 61 
YA9 C25 H11 SING N N 62 
YA9 C27 H12 SING N N 63 
YA9 C28 H13 SING N N 64 
YA9 C32 H14 SING N N 65 
YA9 N37 H15 SING N N 66 
YA9 N37 H16 SING N N 67 
YA9 C38 H17 SING N N 68 
YA9 C39 H18 SING N N 69 
YA9 C40 H19 SING N N 70 
YA9 C41 H20 SING N N 71 
YA9 N46 H21 SING N N 72 
YA9 N46 H22 SING N N 73 
YA9 O12 H23 SING N N 74 
YA9 O45 H24 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YA9 InChI            InChI                1.06  "InChI=1S/C32H24N6O6S2/c33-31-25-7-3-1-5-23(25)29(45(39,40)41)17-27(31)37-35-21-13-9-19(10-14-21)20-11-15-22(16-12-20)36-38-28-18-30(46(42,43)44)24-6-2-4-8-26(24)32(28)34/h1-18H,33-34H2,(H,39,40,41)(H,42,43,44)/b37-35+,38-36+" 
YA9 InChIKey         InChI                1.06  HFHIDKQMGIGARX-ATXIYDNESA-N                                                                                                                                                                                                        
YA9 SMILES_CANONICAL CACTVS               3.385 "Nc1c(cc(c2ccccc12)[S](O)(=O)=O)N=Nc3ccc(cc3)c4ccc(cc4)N=Nc5cc(c6ccccc6c5N)[S](O)(=O)=O"                                                                                                                                           
YA9 SMILES           CACTVS               3.385 "Nc1c(cc(c2ccccc12)[S](O)(=O)=O)N=Nc3ccc(cc3)c4ccc(cc4)N=Nc5cc(c6ccccc6c5N)[S](O)(=O)=O"                                                                                                                                           
YA9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc(c(c2cc1)N)/N=N/c3ccc(cc3)c4ccc(cc4)/N=N/c5c(c6c(c(c5)S(=O)(=O)O)cccc6)N)S(=O)(=O)O"                                                                                                                                     
YA9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cc(c2N)N=Nc3ccc(cc3)c4ccc(cc4)N=Nc5cc(c6ccccc6c5N)S(=O)(=O)O)S(=O)(=O)O"                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           YA9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-azanyl-3-[(~{E})-[4-[4-[(~{E})-(1-azanyl-4-sulfo-naphthalen-2-yl)diazenyl]phenyl]phenyl]diazenyl]naphthalene-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YA9 "Create component"   2023-11-28 PDBJ 
YA9 "Initial release"    2024-09-11 RCSB 
YA9 "Obsolete component" 2024-12-03 RCSB 
# 
