data_8YA
# 
_chem_comp.id                                    8YA 
_chem_comp.name                                  "3-amino-1-{4-[6-chloro-8-fluoro-7-(5-methyl-1H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 Cl F N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "KRAS(G12C) inhibitor, aziridine form, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.926 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8YA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5V6V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8YA C10  C1  C  0 1 Y N N N N N 0.449  3.586   9.028  6.688   0.935  0.811  C10  8YA 1  
8YA C13  C2  C  0 1 N N N N N N 1.798  0.040   9.417  3.702   0.064  2.956  C13  8YA 2  
8YA C20  C3  C  0 1 Y N N N N N -3.231 -4.056  10.038 -1.423  -1.286 -0.169 C20  8YA 3  
8YA C22  C4  C  0 1 N N N N N N -4.078 -6.441  9.407  -3.132  -0.398 -1.512 C22  8YA 4  
8YA C26  C5  C  0 1 N N N N N N -5.544 -9.559  6.740  -7.219  0.723  0.673  C26  8YA 5  
8YA CL   CL1 CL 0 0 N N N N N N -0.470 -1.024  6.774  2.049   2.468  0.389  CL   8YA 6  
8YA C02  C6  C  0 1 Y N N N N N -1.242 -1.317  8.345  1.602   0.796  0.254  C02  8YA 7  
8YA C03  C7  C  0 1 Y N N N N N -1.214 -0.375  9.359  2.598   -0.194 0.306  C03  8YA 8  
8YA C04  C8  C  0 1 Y N N N N N -0.556 0.995   9.239  4.016   0.198  0.475  C04  8YA 9  
8YA C05  C9  C  0 1 Y N N N N N -1.445 2.086   9.106  4.826   0.438  -0.655 C05  8YA 10 
8YA C06  C10 C  0 1 Y N N N N N -2.879 2.210   9.026  4.591   0.401  -2.048 C06  8YA 11 
8YA N07  N1  N  0 1 Y N N N N N -3.179 3.489   8.902  5.694   0.711  -2.666 N07  8YA 12 
8YA N08  N2  N  0 1 Y N N N N N -2.017 4.188   8.869  6.697   0.991  -1.730 N08  8YA 13 
8YA C09  C11 C  0 1 Y N N N N N -0.950 3.374   8.993  6.169   0.815  -0.476 C09  8YA 14 
8YA C11  C12 C  0 1 Y N N N N N 1.320  2.516   9.162  5.888   0.687  1.905  C11  8YA 15 
8YA C12  C13 C  0 1 Y N N N N N 0.825  1.206   9.267  4.561   0.320  1.744  C12  8YA 16 
8YA C14  C14 C  0 1 Y N N N N N -1.844 -0.659  10.561 2.263   -1.536 0.201  C14  8YA 17 
8YA F15  F1  F  0 1 N N N N N N -1.823 0.254   11.567 3.223   -2.485 0.250  F15  8YA 18 
8YA C16  C15 C  0 1 Y N N N N N -2.507 -1.897  10.759 0.918   -1.899 0.042  C16  8YA 19 
8YA N17  N3  N  0 1 Y N N N N N -3.120 -2.147  11.966 0.538   -3.181 -0.065 N17  8YA 20 
8YA C18  C16 C  0 1 Y N N N N N -3.767 -3.312  12.164 -0.727  -3.490 -0.217 C18  8YA 21 
8YA N19  N4  N  0 1 Y N N N N N -3.807 -4.230  11.198 -1.689  -2.582 -0.264 N19  8YA 22 
8YA N21  N5  N  0 1 N N N N N N -3.392 -5.154  9.090  -2.436  -0.350 -0.220 N21  8YA 23 
8YA C23  C17 C  0 1 N N N N N N -5.032 -6.786  8.260  -4.123  0.768  -1.599 C23  8YA 24 
8YA N24  N6  N  0 1 N N N N N N -4.272 -7.284  7.193  -4.999  0.725  -0.418 N24  8YA 25 
8YA C25  C18 C  0 1 N N N N N N -4.451 -8.531  6.456  -6.339  0.768  -0.550 C25  8YA 26 
8YA C27  C19 C  0 1 N N N N N N -6.973 -9.118  6.406  -8.687  0.786  0.248  C27  8YA 27 
8YA N28  N7  N  0 1 N N N N N N -7.707 -8.723  7.608  -9.544  0.742  1.441  N28  8YA 28 
8YA O29  O1  O  0 1 N N N N N N -3.668 -8.774  5.594  -6.838  0.844  -1.653 O29  8YA 29 
8YA C30  C20 C  0 1 N N N N N N -3.217 -6.429  6.817  -4.373  0.633  0.910  C30  8YA 30 
8YA C31  C21 C  0 1 N N N N N N -2.997 -5.161  7.645  -3.373  -0.528 0.897  C31  8YA 31 
8YA C32  C22 C  0 1 Y N N N N N -2.547 -2.833  9.777  -0.074  -0.888 -0.009 C32  8YA 32 
8YA C33  C23 C  0 1 Y N N N N N -1.903 -2.521  8.533  0.292   0.459  0.100  C33  8YA 33 
8YA H101 H1  H  0 0 N N N N N N 0.841  4.589   8.950  7.720   1.220  0.952  H101 8YA 34 
8YA H131 H2  H  0 0 N N N N N N 1.993  -0.140  10.484 3.763   -0.989 3.229  H131 8YA 35 
8YA H132 H3  H  0 0 N N N N N N 1.360  -0.863  8.967  4.055   0.676  3.787  H132 8YA 36 
8YA H133 H4  H  0 0 N N N N N N 2.742  0.283   8.908  2.668   0.322  2.729  H133 8YA 37 
8YA H221 H5  H  0 0 N N N N N N -4.647 -6.336  10.343 -2.405  -0.318 -2.320 H221 8YA 38 
8YA H222 H6  H  0 0 N N N N N N -3.331 -7.240  9.520  -3.672  -1.340 -1.601 H222 8YA 39 
8YA H262 H7  H  0 0 N N N N N N -5.508 -9.804  7.812  -7.037  -0.204 1.217  H262 8YA 40 
8YA H261 H8  H  0 0 N Y N N N N -5.322 -10.460 6.150  -6.990  1.572  1.317  H261 8YA 41 
8YA H061 H9  H  0 0 N N N N N N -3.587 1.395   9.061  3.651   0.157  -2.522 H061 8YA 42 
8YA H081 H10 H  0 0 N N N N N N -1.959 5.181   8.766  7.611   1.246  -1.932 H081 8YA 43 
8YA H111 H11 H  0 0 N N N N N N 2.385  2.691   9.186  6.300   0.778  2.899  H111 8YA 44 
8YA H181 H12 H  0 0 N N N N N N -4.255 -3.503  13.108 -0.998  -4.532 -0.301 H181 8YA 45 
8YA H232 H13 H  0 0 N N N N N N -5.574 -5.883  7.942  -3.577  1.712  -1.615 H232 8YA 46 
8YA H231 H14 H  0 0 N N N N N N -5.753 -7.548  8.591  -4.720  0.675  -2.506 H231 8YA 47 
8YA H272 H15 H  0 0 N N N N N N -6.931 -8.263  5.716  -8.869  1.713  -0.295 H272 8YA 48 
8YA H271 H16 H  0 0 N Y N N N N -7.501 -9.953  5.923  -8.916  -0.063 -0.395 H271 8YA 49 
8YA H282 H17 H  0 0 N N N N N N -8.633 -8.442  7.356  -10.520 0.782  1.186  H282 8YA 50 
8YA H281 H18 H  0 0 N N N N N N -7.754 -9.497  8.239  -9.349  -0.078 1.996  H281 8YA 51 
8YA H301 H20 H  0 0 N N N N N N -2.287 -7.016  6.862  -3.852  1.564  1.134  H301 8YA 52 
8YA H302 H21 H  0 0 N N N N N N -3.403 -6.115  5.779  -5.139  0.449  1.663  H302 8YA 53 
8YA H311 H22 H  0 0 N N N N N N -1.922 -4.933  7.605  -3.909  -1.469 0.776  H311 8YA 54 
8YA H312 H23 H  0 0 N N N N N N -3.561 -4.354  7.154  -2.820  -0.542 1.837  H312 8YA 55 
8YA H331 H24 H  0 0 N N N N N N -1.934 -3.239  7.727  -0.463  1.230  0.063  H331 8YA 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8YA O29 C25  DOUB N N 1  
8YA C27 C26  SING N N 2  
8YA C27 N28  SING N N 3  
8YA C25 C26  SING N N 4  
8YA C25 N24  SING N N 5  
8YA CL  C02  SING N N 6  
8YA C30 N24  SING N N 7  
8YA C30 C31  SING N N 8  
8YA N24 C23  SING N N 9  
8YA C31 N21  SING N N 10 
8YA C23 C22  SING N N 11 
8YA C02 C33  DOUB Y N 12 
8YA C02 C03  SING Y N 13 
8YA C33 C32  SING Y N 14 
8YA N08 N07  SING Y N 15 
8YA N08 C09  SING Y N 16 
8YA N07 C06  DOUB Y N 17 
8YA C09 C10  DOUB Y N 18 
8YA C09 C05  SING Y N 19 
8YA C06 C05  SING Y N 20 
8YA C10 C11  SING Y N 21 
8YA N21 C22  SING N N 22 
8YA N21 C20  SING N N 23 
8YA C05 C04  DOUB Y N 24 
8YA C11 C12  DOUB Y N 25 
8YA C04 C12  SING Y N 26 
8YA C04 C03  SING N N 27 
8YA C12 C13  SING N N 28 
8YA C03 C14  DOUB Y N 29 
8YA C32 C20  DOUB Y N 30 
8YA C32 C16  SING Y N 31 
8YA C20 N19  SING Y N 32 
8YA C14 C16  SING Y N 33 
8YA C14 F15  SING N N 34 
8YA C16 N17  DOUB Y N 35 
8YA N19 C18  DOUB Y N 36 
8YA N17 C18  SING Y N 37 
8YA C10 H101 SING N N 38 
8YA C13 H131 SING N N 39 
8YA C13 H132 SING N N 40 
8YA C13 H133 SING N N 41 
8YA C22 H221 SING N N 42 
8YA C22 H222 SING N N 43 
8YA C26 H262 SING N N 44 
8YA C26 H261 SING N N 45 
8YA C06 H061 SING N N 46 
8YA N08 H081 SING N N 47 
8YA C11 H111 SING N N 48 
8YA C18 H181 SING N N 49 
8YA C23 H232 SING N N 50 
8YA C23 H231 SING N N 51 
8YA C27 H272 SING N N 52 
8YA C27 H271 SING N N 53 
8YA N28 H282 SING N N 54 
8YA N28 H281 SING N N 55 
8YA C30 H301 SING N N 56 
8YA C30 H302 SING N N 57 
8YA C31 H311 SING N N 58 
8YA C31 H312 SING N N 59 
8YA C33 H331 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8YA SMILES           ACDLabs              12.01 "c4cc(C)c(c1c(Cl)cc2c(ncnc2c1F)N3CCN(C(CCN)=O)CC3)c5cnnc45"                                                                                                          
8YA InChI            InChI                1.03  "InChI=1S/C23H23ClFN7O/c1-13-2-3-17-15(11-29-30-17)19(13)20-16(24)10-14-22(21(20)25)27-12-28-23(14)32-8-6-31(7-9-32)18(33)4-5-26/h2-3,10-12H,4-9,26H2,1H3,(H,29,30)" 
8YA InChIKey         InChI                1.03  VJDYKBMYNVLSKK-UHFFFAOYSA-N                                                                                                                                          
8YA SMILES_CANONICAL CACTVS               3.385 "Cc1ccc2[nH]ncc2c1c3c(Cl)cc4c(ncnc4c3F)N5CCN(CC5)C(=O)CCN"                                                                                                           
8YA SMILES           CACTVS               3.385 "Cc1ccc2[nH]ncc2c1c3c(Cl)cc4c(ncnc4c3F)N5CCN(CC5)C(=O)CCN"                                                                                                           
8YA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc2c(c1c3c(cc4c(c3F)ncnc4N5CCN(CC5)C(=O)CCN)Cl)cn[nH]2"                                                                                                         
8YA SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ccc2c(c1c3c(cc4c(c3F)ncnc4N5CCN(CC5)C(=O)CCN)Cl)cn[nH]2"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8YA "SYSTEMATIC NAME" ACDLabs              12.01 "3-amino-1-{4-[6-chloro-8-fluoro-7-(5-methyl-1H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one"           
8YA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-azanyl-1-[4-[6-chloranyl-8-fluoranyl-7-(5-methyl-1~{H}-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8YA "Create component" 2017-03-20 RCSB 
8YA "Modify synonyms"  2017-03-21 RCSB 
8YA "Initial release"  2017-06-28 RCSB 
8YA "Modify synonyms"  2020-06-05 PDBE 
8YA "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      8YA 
_pdbx_chem_comp_synonyms.name         "KRAS(G12C) inhibitor, aziridine form, bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8YA 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C26 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
